Array 1 220548-218357 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG694025.1 Cardiobacterium hominis ATCC 15826 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 220547 36 100.0 33 .................................... GGCGCGGTCGTACTTGGCGCAGACGTCTGCGGG 220478 36 100.0 34 .................................... CGACAGGCGACGATGTAAGCGCGGGTGACGACGC 220408 36 100.0 33 .................................... CGTGTTAAAGTCAATGTAAACGCCTTCGTCATC 220339 36 100.0 33 .................................... TCACCGTCTTCGTCGTATTCATCTTCGTCAATG 220270 36 100.0 33 .................................... AAACAAAACTTTAGCTAAACTGCTTGGCTGTAC 220201 36 100.0 33 .................................... ACGGCAAGTCCTTTTATTTGAATTTGGTTGAAA 220132 36 100.0 35 .................................... TGCTGTAACGGCAAGCCATTCACATATTCGATACC 220061 36 100.0 34 .................................... TTGGCGTTGTGCGGAAGATTTCAGTTTGAAAGTT 219991 36 100.0 34 .................................... CGCTCTTGTTACGTTATCCCCAGTTTTTATAGAC 219921 36 100.0 33 .................................... GCACCAAGGATAATTTGTTTTAACATGATAGAC 219852 36 100.0 34 .................................... AGGTAGCCTTCGTCGAGGGCTTTTTCTTTAAGTG 219782 36 100.0 34 .................................... TTTTAAGCCTCCTACGGACTATCTATTTAAAGTG 219712 36 100.0 34 .................................... ATAGTTATTGAAAATATCATCGAAATACTGTTCT 219642 36 100.0 33 .................................... CCGCCGACTCGTAATGCTGTGGTGCATAATGCC 219573 36 100.0 34 .................................... GTACTCATGCGGCACTCTCCATTTGCGCTAACAG 219503 36 100.0 33 .................................... TTTCCATCACTTAGGAATTTGATTCCTACTGGC 219434 36 100.0 33 .................................... TTGATAGCTCTATCAACTGGCTTAAGTATACGC 219365 36 100.0 33 .................................... AAAAGAACAATTGCAAATTCAATCATGGGGAAA 219296 36 100.0 33 .................................... GGTTAGGGTTGTGGTTTCGCACCGTTACGCCAG 219227 36 100.0 33 .................................... GCCGAAAAACTAAATTCATAAGCGTCATATCTT 219158 36 100.0 34 .................................... AGATGAGTACTGAATAAGATATCCAGAGGAGGAA 219088 36 100.0 32 .................................... GTTCCTTTCATTCTTTATCAGCGGGCATTAAA 219020 36 100.0 34 .................................... AGAAGGAAGCCTTCTTCACTCGCTTGTTCTTCAA 218950 36 100.0 34 .................................... TACAATCGAGGGCTTGCCAGCAATATACTCAACC 218880 36 100.0 34 .................................... AAAAGCCGCTCGATAAACCTGAAAATCTCGTCAA 218810 36 100.0 33 .................................... CGACAAAATAGATATCTTCTTCTTGGAAGTCAG 218741 36 100.0 32 .................................... GCCCGTTGTTGCCGCGCTTCGCTGCGGTAGTA 218673 36 97.2 34 .........................A.......... CAGGTAGAGATGCACGATCGGTTGCGGGTCATGA 218603 36 100.0 34 .................................... AACGGTAGTTTTGTTTCAATTCGCGCCCCGAAGG 218533 36 100.0 34 .................................... TTCTCGAAATAATCACGTCTTCCCTCCCGGATAG 218463 36 100.0 35 .................................... TGACGGAAGTTGAGGCGGTCGGTTTTTGCCTGGCC 218392 36 88.9 0 ...............................TTTT. | ========== ====== ====== ====== ==================================== =================================== ================== 32 36 99.6 34 ATTAAAAACCTGTCCCTGACCCAAAGGGATTGCGAC # Left flank : AAGAAAAAACCATGCCCGACTACCTTATCGCCTACGACATAGCAGCGCCCAAGCGCCTACAAAAAATCCACAAACGCCTCTGCGAAGAAGCCATCCCGCTACAAAACAGCACCTTCCTCTACCGCGCCAGCCCCGGCCAATTCGAACACCTCTGGCAAGAACTCGCCCTGATGAGCAAAAACGAAGACGACCTACGAGCCTACCGCCTCCCCGCTGCAAGCCTCTGCTACGAATACCACCCCAAAACCCCGGAAGGCATCTACTGCCTGTAGCCCCTTTCCAAAACCACCCGCAAAAAAACAAAAAAACCGTGCCAGCATAGAAAAAACCAACCAAATACAATAAAATACGCGCGCTATCAGCGAAGCAAAGTCACCCCAAACACCCCATGAAAAACCCTAATAAAAACAACGGCCGAAGCGCCAACTTTTTCACAAAAACAAAAGTTGGAAACACCCCCTGCAACACATTGAAAACAAGGAGAAAAAACACCCCTGACT # Right flank : CTTAATCTGCCCGCTTTTGCGGGCTTTTTTATATGACAAATTTGTCGTTGCAGACTAGCTATAGCAGGTGCGTTATTCTTGTATGTTTGTTAAAACACTGTTTAGACATCTTTAAGCGGTGCGTCACAAAATTGTCAAAACAGATAGATTTTTCTTTCTGGCGTAATGTGCCTGCATCGCAACAAGATGATGCAATGATAAGAGCGATGCCTGCTTCCAGTGTAAAGAACCGCCCAGACGTACCGAGTATCTTTTTTGCGCCCGCTGTCCAGAATTCCACCAAACAGCAATGGGTGCTTGTTTGTTTTACTGATACTGGCTGCACTTATAGCGATACACCGAAAGCCTCAGACAAGGCGCGTCGCTGAAGACAGTACGCGGTTGTACGGCGAAGCGACGCAACGCCGTATGAGGCTTTTGGGGGATTGCTATATATTCTTGAGGTGCCGGTTCTGTCTTAATCAGGCTGGCGATAAAAATCCCATTATTGCGTCTTTTTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAAACCTGTCCCTGACCCAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 32794-33483 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG694026.1 Cardiobacterium hominis ATCC 15826 SCAFFOLD2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 32794 32 100.0 34 ................................ TGCGCTTCTACCGCAGCTACATGGGGCGCGATTT 32860 32 100.0 33 ................................ ACGGCAAAGACCGGGAAAACCCATGCAGGGGCG 32925 32 100.0 33 ................................ GGATGCCTTCTTGGCACGCTTTGTGGGGCTGAC 32990 32 100.0 34 ................................ CGCGTTTCGCTTTTGGCGTCATCGTTGCGACACA 33056 32 100.0 34 ................................ GTCCAACGCGGCCAGCACCCTGTCCATCGCCAAG 33122 32 100.0 33 ................................ GCTGAGGCAGGTAGCAGGCATGCGCTACTGGAG 33187 32 100.0 34 ................................ CTTTGGTGGATTTGTTGTTATCGCCGCTGTATCG 33253 32 100.0 35 ................................ CTGCGCTGGAGCAGCGATGGCACAAAAATCGAAAA 33320 32 100.0 34 ................................ AATAAGTCTCGTGGCGTTTGCCCTGCCGCACGAT 33386 32 96.9 34 ...................T............ CGCCGCGTCGGCGAGGACTTGCGCCGCGTCAATG 33452 32 71.9 0 ...........C.......T.AC.T..T.TGT | ========== ====== ====== ====== ================================ =================================== ================== 11 32 97.2 34 GTCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Left flank : CGCAATATCCACCTTTCTTGATGCGATAATGTTGGTATTGATTACTTACGATATTTCCTTTTCAGATACAGCGGGTGCAAAACGTCTGAGACAAATAGCAGCGCATTGTCAAGATTATGGCGTGCGGGTGCAATATTCCGTTTTTGAATGCGATGTGAATCCCGAACAATGGGTACGGCTAAAAGATAAATTATTACAAACCTACCAGCCGGAAACTGATAGCTTACGGTTCTATATGCTTGGCAGCAAGGGACGTAATAAAATTGAACATCATGGTGCCAAAGCAGCCCCAGATATATTTCGTGATGCATTGATTATCTAGCGCTAACCATTAGTTCTCATCGAAAGGTGGGAGTATTGACGGCAGATATAGCGTGCTGAATAGAAATAGATTTAAACACATAGCATACGAATTGCATCTTACCCTACTGTACTTTGTCTGCTTAGCTAGCGAATAGTGCGCTTTCTATGCAGGCTGTACCTGCCATTGCATGATGGCA # Right flank : TAACCAAATGATTTTATTGTGTTCTTCCACTCAATATGAGCATCTTACCCGCAAGCATTGTGGATAACTTGGTGCATAAACTGCGGGGGATTGTGAAATTCACAGTGCGTGCCACAGCTTACACATGACGATGCAGCAATATTGGAAAAATAAACCTTGTTGAAAAACAACGTAGTAAGCAGAAAAACCTGTAAGAAAAGCATTTTTTTAGGTTGCAATTCGCCAAGGCGCGCCAGTATGCGATTTGTGCATAACTTTGCTGTTATCGCCATCCCCCGAATGCTTCATACGGCGCTGCGCCGCCTGACCGGGCATCCATAAAAGAAAGTGGCGAAGTCATTTTTATGGGCAACCCGCGCCGTACAACCGCGTGCTGTCTTCGGCGGCGCGCCTTGTCTGAGGCTTTCCGTGTAATCGCTATAGTACGGGAACTCACCGCTATCGTCGCAGGGTTTTCAGGTGTTGTTTCCGGTGCATCCGGCAATGAAAGTCTGTTTCTG # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 2 36106-36270 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG694026.1 Cardiobacterium hominis ATCC 15826 SCAFFOLD2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 36106 31 100.0 35 ............................... GATGTGGTCTATGTCGATCAAGGCAAGCCGGTGCG 36172 31 100.0 37 ............................... GCGGTGGTCATTCTCACCGATGACAACACGCACAGCG 36240 31 93.5 0 ..........C...................T | ========== ====== ====== ====== =============================== ===================================== ================== 3 31 97.8 36 TCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Left flank : AGGCATTGACCTCGCCCTGCGCGTCAGCCGCGCGCCGATACCGAGCCTTGTCGTCCGGCGGCTGTTTGAAGTGCGCTTCGCGCTGGTCGCCTCGCCCGCCTACATCCGCCGCCACGGCCTGCCACGAACGCTTGAGGACGCTGCCAGCCACAGCGCCGTTCTCCCATCGTATGCCGACATCAGCCGCATGGACTGCCGCCGTGGCGACGAAAGCCACACCCTGCACCTGCACAGCGCCCTGCAAAGCAACAGCACCGTCATGCTGCACCAACTGCTGCTTGCGGGCAGCGGCATCGGCTACCTGCCGCTGTGGCTGGCGCAGGACGACCTCACCGCCGGGCGGCTGGTGCGCCTCCTGCCGGACTGGCAGTTACGCAGCATCACCCTGCACGCCGCCTACCCCGACCGCCGTCACCTCAGCGCGAAAATCCGCAGCTTCATTGATTTTCTGGTGGAGAAGGCGAAAACGGTAGAGGGCGATTGAAGTGACAGGGTGTTAT # Right flank : TTTACAAAACTCGCAGCGGTCGCCACGAGCGGAAAATCGCTCCCCACGCCCTAACCGTTCCCCATTTTTGGGCGCTCCGCGCCGTTCAAATGTGCACGGTCTTCGCTACGGAATGTTGTGTGTATAGCGGGCTGTTGTATGGAAATAAATGGGATGGCGATACCGCGCCAACCCGCAACACCGCTTTGGTGGGCGGTTTTTTTCACCGCACCGTTGCGGGTAAAGCAAAACCCGCCGGGTGGCGGGTTTTGGCGAGTGTGTTGTGTGTAGTTATTGGTTCGGTTGTGGCGCGGTGCTTTATTTTTCCAGCAGGGCGCGCAGCATCCACGCGGTTTTTTCGTGGGTTTGCATGCGGGTGGTGAGGAGGTCGGCAGTCGCTTCGTCGTTGGCTTCATCGACTGCCGGGAAGAAGGCGCGGCAGGTGCGCACTACGGTTTCTTGTCCGTCCACCAGTTCCTGGATCATGGTGAGGGCGTCGGTTTTGCCGTTGCATTCTTTGA # Questionable array : NO Score: 8.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.00,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 3 539625-538681 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG694026.1 Cardiobacterium hominis ATCC 15826 SCAFFOLD2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 539624 36 100.0 34 .................................... ACCGCTGACATCACTTCGGTCAAATCAACATAAC 539554 36 100.0 34 .................................... TTGCGCAGGTCGACCACGTCCCGTCGGACATCGG 539484 36 100.0 33 .................................... TCAGTGAACTTCTTTATAGTAAGCCCAATATTC 539415 36 100.0 33 .................................... GCTAAAGCTGCAATTGATAGCAGTGCGAAAATT 539346 36 100.0 32 .................................... GTAACCGGCTGCGCTTTGCAAGACGCGCAGAT 539278 36 100.0 33 .................................... TTCTCAAGAACATCATCAGCATCCGCGATATAA 539209 36 100.0 33 .................................... AAACACCGGGCGGGGTGTATTCTCGGCAAAATC 539140 36 100.0 32 .................................... GATTTGTTGGCGTTCTTCGATCAGTTCCATCA 539072 36 97.2 33 ...A................................ CCATGGGTTTTCTCCTGTTTTAGAAAAAGAAAA 539003 36 100.0 34 .................................... TCGCATTCCTCGCGCTGCGCGATGCGTACACCTG 538933 36 100.0 35 .................................... GACGACTGCGAAAAACGTTATATAAATCTGCATAT 538862 36 100.0 33 .................................... CCCTGTGGGCTTGCCCATTGATTTGAGGTATCG 538793 36 97.2 41 ...............................A.... CTCGCCGTCCCGACATGGGCGGCTTCTTGCTTGGATTTTGG 538716 36 80.6 0 ...AG...C...................T..T.C.T | ========== ====== ====== ====== ==================================== ========================================= ================== 14 36 98.2 34 ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC # Left flank : CGCGCTCACCGCCGCCTTGCTCAATGGCGCAGCGCTTGCCGACGCCGTACAAAGCGCGGGCGACTGGGTGGTTGCCGCCCTGCGCTATACCGCCGCAGAAAACAGCGGCGAGCTGCGCTTCCCGCCGCAATAACTCGCCCCAAGAACCATAGAAAACAGAAACGGGAAAACCGCCGATAGCCCCCTCTCCCCTCTCTTGCTGCGCAAACCATACTTGCGCAGCAAGAGAGAAAAGGAGTGCGCGCTAAAACAGCACGTTTTACAGCTTGGCATCCTGAAATACCACAAATAACAACGTTGCAACCACATCCAAAACAAATGACAAACAGCGCTTAAGCGGTGCATACAAAAAACCAATACCCCTCAAAAAACTGCTAAAATACATCCCATAACAATCCCCAACAAAATCCGAATGATAAAGCCCAACTTTTTGCAGATTACAAAAGTTGGAAAACCCCCTTCTAATAACCTAAAAACAAAAAAGAAAAACACACCTCGCT # Right flank : AAAAAATGCCGACATTCGTCGGCATTTTTTTATCGGTGATGCGCGCGTTGGATGCGCGGCGAGGTTTCGCAGGCGGGTTCAGGTCATCTCCCTGCCGCTTCCGCCTGCGCCTCCAGCGCGCTTTCTTTGACGATGCACATCGGTTTGCCGCTGACCGGGCAGGTGTACGGCGCGGCATTGACCGCGAAGACGTCGGCGAGCAGCGCCGGGGTCAGCACTTCCGCCGGGCTGCCTTCGGCAACGAGTTGCCCCGCTTTCAGCACGATGAGGTGGTCGCAGTAGCGCGCCGCCTGGTTCAGGTCGTGCAGGACGGTGATGACGGTCGTCCCTTTTTCTTGTTGGGCGCGCATCATGTCCATCAGCGCGATTTGGTGGTTGAGGTCGAGGTAGGTGGTCGGTTCGTCCAGAAGCAGGTACGGCGTTTCCTGCGCCAAGGTCATGGCGAGGAAGGCGCGCTGTTGTTGGCCGCCGGAGAGTTCGTCCACGCGCTTGTCGGCGAG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA //