Array 1 46520-48668 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCMO01000004.1 Ligilactobacillus salivarius strain C2 contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 46520 36 100.0 30 .................................... TCTTGCAAACCCTGCTGAAACATGGGCGTG 46586 36 100.0 30 .................................... CACACATCGCGATGATTGTATCAGAAGTCA 46652 36 100.0 30 .................................... CATACAGCCACTATTATATGCATAGACTTA 46718 36 100.0 30 .................................... TTGATTATCCTTAAACATTTAAATTAATTT 46784 36 100.0 30 .................................... CAAGCTCGCTCCCCTGGATTGCACCGACAA 46850 36 100.0 30 .................................... TAACAAAATAATATACGAGACAAGCAAAGC 46916 36 100.0 30 .................................... AAAAATATGTTTTTGTGTTGTCGACCTAAT 46982 36 100.0 30 .................................... GCAATTTACCAGCTACTGTTAAGAAATCAG 47048 36 100.0 30 .................................... TTGGCTCTCTCTTTAGCTGCTGCGCCTGAA 47114 36 100.0 30 .................................... AAGAAAATGGCAAAGTCTACCTAAGAATCG 47180 36 100.0 30 .................................... CAGTAGATAAAGGATCAAACGAGTTAAAAG 47246 36 100.0 30 .................................... ACAAGCCGTCAAGGCTTTAAACCAATACAA 47312 36 100.0 30 .................................... TTATAACGTCAAGAATTTAGACTTGCAAAG 47378 36 100.0 30 .................................... GCCTTGTTCCTTTTCAACTTCTGATATGTA 47444 36 100.0 30 .................................... TCAGAGGTAGCCAAGCAAGTGGCAATTTAT 47510 36 100.0 30 .................................... CGAAACAGGTTTAATTGCATTAGTTCGTGA 47576 36 100.0 30 .................................... AAGATCCTAGAAAGCCTATCAGCACAACAG 47642 36 100.0 30 .................................... ATGTTGTACGATAAATTGAAGACTGCTTCA 47708 36 100.0 30 .................................... ATGACATTGATGTTTAACAACGTTATGCAA 47774 36 100.0 30 .................................... CCTCTCTTTCAATGATTGAAAAAGGTAAGA 47840 36 100.0 30 .................................... TGTAGACTACAATGGTCGTCCTATTGTTGA 47906 36 100.0 30 .................................... TTAATATTAATGATCCCGGTTTAGCTAAAT 47972 36 100.0 30 .................................... GTTTATACAGTTATCTCAACGTTGGAAAAA 48038 36 100.0 30 .................................... TGTTGTAATGGCAGTAGTGGTATCAGTTCA 48104 36 100.0 30 .................................... CAATGCGACTGGGTCGTATGTTTGTAACGC 48170 36 100.0 30 .................................... CTTTAGTGATAATATCTAAGTCTTCGTATC 48236 36 100.0 30 .................................... AGTTGCTGATGTTCGTACTATTCCACAAAT 48302 36 100.0 30 .................................... GTTATGATAGCGATGATGAGTTTGAATTAT 48368 36 100.0 30 .................................... TCAACAATGCGGTCTTGTCCACTGTCTGTT 48434 36 97.2 30 ........................A........... TTTCAAGTTATATCCTATGTTGTGAGTTGG 48500 36 97.2 30 ........................A........... GAAGTTTCCTATTGAATGGTGCAAAATTCG 48566 36 97.2 30 ........................A........... GATCTACGTTACATTTTCTTAATGTTCACA 48632 36 80.6 0 ......T...A.........T...AG...G...C.. | C [48661] ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.2 30 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACT # Left flank : AACAGACCGAATTAATAAAAAGTATATGAATATATTGATCAAGAAGATTATTGAAAATATTACAGACGATGAAAGGCAAGCAATACTAAAATCGGTGAATAGTTTGTATGATCGTATTAGAGAAGTTTTGTATAAAATTGATATACCCTTACAAGTAGATTATGACAATGATTTAACGAGATTATTCAAGTATTGTCAAGTACATACAGAGACGTTGCTATGGAAAAATGCATATGATAGAATATCCTCAGATGTTAAATTACATGTGGAACTAAATAGAAAACGAATTATAGGTCTAACCAATGTCGTACATTATCTTACCAAAGAAGAGTTTCAGGAACTTGTAAGTCTTGTTAAAGCGACTAACTCATTAGTATTTATAATTGAATTCACAGAAAAGGATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATGTTGATTGGCACTAATGAATCGTTAAATTTTGATTATAAAATAACG # Right flank : TAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATGTTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATAAGATATAAAAGAAAGTGAGGGATGATGATGAAAATCCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTAGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAAGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGATTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGAAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAACTAGGGAGGGGGAATAATAATGAACTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //