Array 1 141938-142164 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXXY01000125.1 Akkermansia muciniphila isolate Chimpanzee_2_1.fasta, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 141938 31 100.0 34 ............................... AAGTTTGTCCGCACGGAGCGTCTGCCCAAGTCCG 142003 31 100.0 34 ............................... ATTTTTTTGGCGAGATCCGCCGACTTGTCTTCCG 142068 31 100.0 34 ............................... TGGTGTGCCCTGGAGAGGCCGCCGAATACCAGGA 142133 30 90.3 0 ..........A.G.................- | CG [142142] ========== ====== ====== ====== =============================== ================================== ================== 4 31 97.6 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : CGGACGGGAGGCATGCCGGATTGAAGTGCCCTGGCGGCGCGGGGAATCGGAGAATTCCCGCTGGTCCTGCTGGTGCTGGCACAGTGCCGAGGCTTCCCCTGATTTATACGCCCGGATGTTCCGGATGGTGACGACAGGCAACCCCCGGCCTTATGGGGTGCCGCGCGAGCGCAGGGCGGAAATTATGCACTCCCTTTGCAACGCCAAAATAAAGCTGATGGCAGCGGCGGCAATAGCCCCGGTTCAAGGTACGGATCAACCTTCCTTCCGGTGAGTTTTTTATAGCAAATTCGGGGGTAAAAGTCACGCAAATTCACCCGTTTTCAGGCGTTTTTTTCACCTCTTTTCAGGCTTCCGGAAAGGGGCTTTTCCTGGCCGCAAGTGGCGAAATATCGCAACAACCTGTCCCGCATATCGCAACTATCTTGCGCCGTTACACATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTCCAGGA # Right flank : | # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.42,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 105439-105018 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXXY01000097.1 Akkermansia muciniphila isolate Chimpanzee_2_1.fasta, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 105438 31 100.0 34 ............................... CATGAAGTTTTGCATTAAGCCACCTTTGCGTAAC 105373 31 100.0 34 ............................... CCTTCGACACCGTACACCCTTACAAGACCCGCGG 105308 31 100.0 34 ............................... TAACAGAAATAATTGATAACGATGAATACTACAG 105243 31 100.0 35 ............................... GCTCCCTGGTGATTGACCGGGGGGAAAGAAAGCTG 105177 31 100.0 34 ............................... GAGTCCCGTACGCGATGCCAGTTTCTCTATTCTT 105112 31 100.0 33 ............................... CACATTAGCGCATGCCTATGATTACAGTTATCG 105048 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 7 31 100.0 34 GTCGCACCCTCACGGGTGCGTGAATAGAACC # Left flank : TTCTGGAACGTATTGCCGGGGATGGTTCCGCCAAAAAGGCGTCTGAATTGGGCAAGGAAATTCCGACCGCCTTGTAAAGGTGAGGAGAATTTTTCCCATTGAGCCTTAAAGCTGGAGCCGTCCGTAAGGGCGGCTCCTGTTTTTCATGGCGGAACATTCCTGTTTCCCGGGAGGTGGATGCCTGGTTTTGTAAGGTATGAGGAAGATGGTTCTGGACGCGGCGGAAAAGAACGGTTAACATCAACGAAACAAATTGAGTGCAAGCTGGCTGGGACGTGAAGAAACTGAGTTTTTCTGAAATGATACCGCTTCGGATGCTGCCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCAGCGCATGCTGTAAGTGCTTGGGAAATGTATCTTGAAAAAAATCTCCTTTGATCAGGCCTGTCTGCATCCGTTTTGTTCATCAGGTTGGCGCAAAATCTTTGTTGCATGTTTGATGCTCAAACCGTATTAGTCTGGCC # Right flank : CCGTGGTTTGAGAGTGCCGTTTACTATTTTTAAAAAGCAAGGCCTGAGTAATACAAAAGAAAGACAGAATGCCCCTTGTTTCTCAGTATTTGAATCCTGAGCGGGACAGGGTGATTTGTACAGAGAGGGCGGTGCGCAGGAGTAAAGCGCCCGTGCTGCGTACTGGAAACAGGAAGCAGGGGATATTCTTTCGGCTGGACAAATGGAGAAGCGGAAGACACTCTAAGCGTTCCATGGAGGACATACGCTATTACAACCGTTATACGGGCAGAGTGGAACGGGAGCAGGTACTGGGGGAGAAGTATATGCAATGGATTTACGGCACTGCCTCGGGGAAGGCGGCGCTGCATGTCCTGATTAAACGAGGCGTTTTTTCCCGTCTGCTGGGGTGGTTGAAGAACCGCCCTTCCAGCGCCCGTTCCATTCCCTCTTTTGTGAAGGAGTACGGCATTAATATGGAAGATTCTCTCAAGGGGATGGGAGAGTTCAGGCATTTCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATAGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 2-884 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXXY01000001.1 Akkermansia muciniphila isolate Chimpanzee_2_1.fasta, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2 31 100.0 34 ............................... AAGTTTGTCCGCACGGAGCGTCTGCCCAAGTCCG 67 31 100.0 34 ............................... ATTTTTTTGGCGAGATCCGCCGACTTGTCTTCCG 132 31 100.0 34 ............................... TGGTGTGCCCTGGAGAGGCCGCCGAATACCAGGA 197 31 93.5 34 ..........A.G.................. CGGCAGCTGCACGACGACCGCGCCCGCCACGGCC CG [205] 264 31 100.0 34 ............................... CTCAATCAGGTCGCCAATCGCCCGTAGATAGTAA 329 31 100.0 34 ............................... GGATCTCTGTCTTGTTGAAGGTCCATCCCGCGAA 394 31 100.0 35 ............................... AAGAGAAGATAGCGCAGGAAGCGCTGCGGCAAGGG 460 31 100.0 35 ............................... AAGAGAAGATAGCGCAGGAAGCGCTGCGGCAAGGG 526 31 100.0 35 ............................... AAGAGAAGATAGCGCAGGAAGCGCTGCGGCAAGGG 592 31 100.0 34 ............................... AAGAGAAGATAGCGCAGGAAGCGCTGCGGCAAGG 657 31 100.0 35 ............................... ATTATTGAAGGAGGCTATCACTTGCTGCGATTTCG 723 31 100.0 35 ............................... GTCGTCAATTACTTCGTAGCAATAATCATGCCAAT 789 31 100.0 34 ............................... ACGTCGTCGGTCATTTCCGCCAGGGCGGAGGCGC 854 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== =================================== ================== 14 31 98.8 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GG # Right flank : TGTCGTAGACTGAACGACCTAATATCCTTGGAATAAGAAGAAGCTGTTGGCTATAAAGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGCAGATCATATTTCTTTACAATATTTCCGTCCTCGGAGACTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGTTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGTGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGAACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTGCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9373-11220 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXXY01000001.1 Akkermansia muciniphila isolate Chimpanzee_2_1.fasta, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 9373 33 100.0 35 ................................. ACATTTGTACAAGTGAAATCATGACGCCGACTAAA 9441 33 100.0 34 ................................. CTCCGTAAAACCGCAGCACACCTCATGCTTCTCC 9508 33 100.0 34 ................................. CATGACGGAGGCCGCGGAATGCATAGCAGGAGCT 9575 33 100.0 34 ................................. AATATTGACTTGTATCTCCAAGTTGAACAAGGAA 9642 33 100.0 35 ................................. TCCTCTCATGGCCACGTTTTCTAAAAAAGCCATCC 9710 33 100.0 34 ................................. TCTTAGAATTAAGAAAGAGGAACGATATCTACAA 9777 33 100.0 34 ................................. CTCTTATAATTCAAAAAGCCATCTCTCCTTTTAT 9844 33 100.0 34 ................................. TATATCTCACTAATGGAAAAGAAAACAAAATCAT 9911 33 100.0 33 ................................. CCGGACGGACACGCCGCAAAACCACCCGTCAAG 9977 33 100.0 34 ................................. CGTATCTCGATACGTGGGGCGGGTACGTCAAAGA 10044 33 100.0 36 ................................. ATGTCAGGTAACGTAATGCTTGTGTTTTTCTTGCTG 10113 33 100.0 34 ................................. AAGAAGAATATGAAGGGTGAAGCTCCTCCCGTGC 10180 33 100.0 35 ................................. CAGGTCTGGGACTGTAGCTCCATGCCGCCGGAAAA 10248 33 100.0 34 ................................. GTTATTGGTTGCGGGGATAAAGCTGGTTGTGGTC 10315 33 100.0 35 ................................. GGAGTTTCTTCCTATATCAGGGGGGCAGGTTTATT 10383 33 100.0 34 ................................. TGTCTGTCATGGGCGCAATCGCAATGCAGGGAAA 10450 33 100.0 35 ................................. GATGGAACCTCCGAAGCGGGGAGGCTCCGGCGTAT 10518 33 100.0 34 ................................. GGGACCGTAGAAGCCCGGCGCGTGTCTGATATAG 10585 33 100.0 34 ................................. TACTCCGGAGCTGGGAATGGACGCCGTAACCCTT 10652 33 100.0 34 ................................. TGCTCGGATTTATCAACAAGAACCGGGGTTTCCC 10719 33 100.0 34 ................................. TATCTGCTCTGATTATTTGCAGGCGTACAGCAAA 10786 33 100.0 34 ................................. TGGATGACGAGGCCGTCAATGGTGAGGTCGGCGG 10853 33 100.0 34 ................................. TTCCTCCGCCATATCCTCCGCCTCGACCCCTATC 10920 33 100.0 34 ................................. ATCGCCGACCACTGGTCCGACCCAGACACCGTAG 10987 33 100.0 34 ................................. ATCGCCGACCACTGGTCCGACCCAGACACCGTAG 11054 33 100.0 34 ................................. ATCGCCGACCACTGGTCCGACCCAGACACCGTAG 11121 33 100.0 34 ................................. GGTAAGTCCGGCGTCACCCGGCCGGAAGAAACAA 11188 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 28 33 100.0 34 GTCGCACTCCGTAAGGAGTGCGTGGATTGAAAC # Left flank : CTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGTCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAACAATGTATAAGGTCGGCCGCAGTCGCACTCCGTAAGGA # Right flank : CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCACTCCGTAAGGAGTGCGTGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.01,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 11694-12506 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXXY01000001.1 Akkermansia muciniphila isolate Chimpanzee_2_1.fasta, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 11694 33 100.0 34 ................................. TTCCTCCGCCATATCCTCCGCCTCGACCCCTATC 11761 33 100.0 34 ................................. ATCGCCGACCACTGGTCCGACCCAGACACCGTAG 11828 33 100.0 34 ................................. ATCGCCGACCACTGGTCCGACCCAGACACCGTAG 11895 33 100.0 34 ................................. ATCGCCGACCACTGGTCCGACCCAGACACCGTAG 11962 33 100.0 34 ................................. GGTAAGTCCGGCGTCACCCGGCCGGAAGAAACAA 12029 33 100.0 34 ................................. GCTGTTATCCGTTTGATGTTGTCAACCGACAGCA 12096 33 100.0 33 ................................. TCAAAAATCCGCCCTGGAACGCGTCATTATTCC 12162 33 100.0 9 ................................. GAGACGCCG Deletion [12204] 12204 33 75.8 34 .C....A..AA..TT.CC............... AGCCTGTTCAGAAAAAGCCCCGAACAAGAACAAC T [12209] 12272 33 97.0 35 ...........C..................... TGACGGAGGGCATCCACATGGTCCACCTCCGCCGT 12340 33 100.0 34 ................................. CACACCCAGGCCGCGGGGGAAACGTCCACCTGAA 12407 33 97.0 34 ........................T........ TGGTCGCTGATCGTGTTGGACCTCATCATATTGG 12474 33 97.0 0 ...........C..................... | ========== ====== ====== ====== ================================= =================================== ================== 13 33 97.4 32 GTCGCACTCCGTAAGGAGTGCGTGGATTGAAAC # Left flank : CTCCGTAAGGAGTGCGTGGATTGAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCTGAATGGTGATTGTTATTTGCGGTTTTCCGCCCGTCGCACTCCTTGCGGAGTGTATGAAGAGGACGACGATGCGGTAGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGGGTGGTGGTCAAGGGCGTTTTCCTGTAATGCTTGATAATTTTTTTACAAAGTATTGGTACATTCCGACTCTTTAAAAAATTCCATTTTTCAAAAAATTTTTCAGGATTGTTGGAGCTGGAAGGCTTGTCAGTTAATTTCTCTATTTATTTTTCAGAAAGAGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGGGCCAGGACGGGGTCCTGCGCCGCGCCTCCCGTTTCCCGCTGGCGGTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCTTCGTCCCGGAAAACG # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5271-5103 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXXY01000083.1 Akkermansia muciniphila isolate Chimpanzee_2_1.fasta, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5270 36 100.0 30 .................................... GCCTGCCAGACCGTATTATTCTTATCTACC 5204 36 100.0 30 .................................... GTAATCCGTCGAGATTATGCGGGCGAATGG 5138 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Left flank : CTGACTCTATATATAGTCTTATTTCTGAAGGAAATAAAACAATGCAGGCAGAACGACGAAAAAGAGGAGGGGAGAAACGTCCTGCAATTAGTATTGTGCATTGTCGCATGGTTTTTATTAGTTTGGATGCTCATCTGCCATCCTGAATGGCTTGAGATTTGCGCTAAAACATTTTTCTTCGGATGCATCGCTTTTACGGCGGCCTTGATCATCATACTTTGCTTGCTAGGGTGGAAGTACAAGAACCGCGAAAAGCAAGAAGATTGACATGTTGAGCATGGGGGCTATTGGAAAAATTGCGTCTATGCTTTTCTCTATATTGTTTGATGCCTTTCGTAGTTATTCATTATTCTAATTTTTCCAATTACCTCTGGGAAACCCTGGGAATGAAAAATCCGTTGCACTGGATACATTCTGCCGTTTGCAGGTGTTTTTCTTGATGTGACAGAAATCAACAAGGCACAGTACAATAGCTTCAAACAGGACTGGTCGCCGCCGTT # Right flank : CGATACTGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCGTCCGATATTTTTACCAGAGGAGCATCTGCTGAGGAAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCTATTCTTTCCTGAGTAACACACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATACTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATATGCCATGGTTCATACGGTCCGGATTGCCCGGCAAGAACTGCTTTACGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCATCTGTTTGTTCTGGTGCATAACAGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //