Array 1 9332-8327 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAJRJ010000018.1 Escherichia coli strain ECM_74 NODE_18_length_85622_cov_22.2458, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9331 29 100.0 32 ............................. TTTGCTGAGTGTGCATACACACTTGAACATCA 9270 29 100.0 32 ............................. CTATCAGTAACAACCTGGTAAATATCGGTTTT 9209 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 9148 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 9087 29 100.0 32 ............................. GGAAAATAAACGCGTTATTCCTTGATGGGTGC 9026 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 8965 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 8904 29 100.0 32 ............................. TTTGTTTTGATGATTTATCAGTATATGAATTG 8843 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 8782 29 96.6 32 A............................ GTACCGTTGAGCAATGGTGGGTAAATGGTGCT 8721 29 100.0 32 ............................. ATTTAGATACGGCACACAGGAATGCGCTGGAT 8660 29 100.0 32 ............................. CATGGGAGTCCAGATTACAAATTCCAGAATGG 8599 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 8538 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 8477 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 8416 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 8355 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16673-17433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAJRJ010000012.1 Escherichia coli strain ECM_74 NODE_12_length_121769_cov_21.3567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16673 29 100.0 32 ............................. TCGGCTCGTAGAAATGCAGATTCGCCGGATTA 16734 29 100.0 32 ............................. ATAAAACAACAGGTGAGTTGGGTTTTGAGTAT 16795 29 100.0 32 ............................. ACAATCAGATCACGATCGATGCCTCGCGTGAG 16856 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 16917 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 16978 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 17039 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 17100 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 17161 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 17222 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 17283 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 17344 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 17405 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.7 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //