Array 1 798989-795989 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018223.1 Nostoc linckia NIES-25 plasmid plasmid1 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 798988 37 100.0 34 ..................................... AATAACTGCCATAGGGCCAATTGGAAACGCCAAA 798917 37 100.0 33 ..................................... GTAATTTACAATGCAGATTTTGACACAAATATA 798847 37 100.0 34 ..................................... ACATGTGCCAGTTGCTCTTGCCTCCATAGCCAAA 798776 37 100.0 35 ..................................... GTCCGGCTAAATGGATTTCTCCTACTAAAACTATT 798704 37 100.0 35 ..................................... TTCTTGATTTTTTTGTAGTTCGTACTATTTTACTA 798632 37 100.0 34 ..................................... TTATTAACCGCTCAAATGGCAAAACAAAACAATA 798561 37 100.0 38 ..................................... TTATAATTCAATAGCACCTTTTCTTAATTCCTGTGTTG 798486 37 100.0 39 ..................................... CCAATCTGCTACCTACGATCGCACCGACACGTTTGCCCC 798410 37 100.0 35 ..................................... GATTCCAAGATTAATGGGGGGATTGGATGCGGATG 798338 37 100.0 35 ..................................... AAGTAGTTAAAAACTGTGTAAATAGCGATTGCCTC 798266 37 100.0 34 ..................................... AGCAAGGGCTTCCTCCCTTGCTTTTAAATCCGCT 798195 37 100.0 33 ..................................... TGGCTATTCTTCAATTTCATTCATAACACTGCA 798125 37 100.0 34 ..................................... TACAATCCCTACACCAATACAGTGCAAGCTTATG 798054 37 100.0 35 ..................................... GGGATTTGCCAAATCGGCGAATCTTGGGCAAATTC 797982 37 100.0 33 ..................................... TTATTGGGCTTCTTGTTGCTGCTTTCGGCTTTT 797912 37 100.0 34 ..................................... GTTTCTCCTGGGTATTATGGTAGTTTTTATGCTG 797841 37 100.0 34 ..................................... TAGAGAGCGAAGCGGATGATTTTGATTGCGGATT 797770 37 100.0 34 ..................................... GTGGATCGGCTGGCGAGTGTGGACTAGAAGACCA 797699 37 100.0 34 ..................................... AGATGATACGCATAGATCATGGTGATGGTTACCA 797628 37 100.0 38 ..................................... AAAGATTGTAAAATCCAAAACTGTGCAGGGGGTGGGTT 797553 37 100.0 35 ..................................... GCTAGCTCTGGTGATACCTCCAGTATCTCACAGGC 797481 37 100.0 33 ..................................... AGTTATCCGAAGTTGACAGGTAACTAAGGTTGC 797411 37 100.0 34 ..................................... TAACGATCCAGAGATGAAAATTCATCTGGGTGAT 797340 37 100.0 35 ..................................... GTGTGGGTGGGTGAAGGGCTAGTGCTAATCCAGCC 797268 37 100.0 35 ..................................... GCCAACCCCAAGGGGGGCTAAGCTATGAGCATTGT 797196 37 100.0 38 ..................................... ATTAACAACGAGAAATTACTCGTAGAGGCAGAAAGAGA 797121 37 100.0 42 ..................................... AAACTCCCCACAGTTCCCAGACTTGCGAGGCCTGCCAGCGCT 797042 37 100.0 34 ..................................... AAATAAACATTGCTGTTGCGTTCTTTGATGTAGG 796971 37 100.0 33 ..................................... TTTCTAAAAAAATTACTGCTGCCGGGGACAGAT 796901 37 100.0 34 ..................................... TTAGACCCTCACGCCGCCAAGGGGCAATGGGCAG 796830 37 100.0 34 ..................................... ATCAGCTTCAAGACCTTTAACCATTAGATATTTA 796759 37 100.0 35 ..................................... TTCTTTTTCTGTTTCTGTGGGGAATCCCACCCCAC 796687 37 100.0 42 ..................................... AGTTAATTTTATAATGGCTATTTCGCTTGGCGGGCAAATGAT 796608 37 100.0 36 ..................................... CTTCTAGTGGAGCCGCTGGGGCAAGTTCTATGGCAG 796535 37 100.0 35 ..................................... ATAATGAGAGAGCATGGCAGAAGAAGGAATTCAAT 796463 37 100.0 43 ..................................... GGCGGCTTACGGGTTAACGTAGCTCTGTTACCCCAGAGTTGAA 796383 37 100.0 34 ..................................... AGACTGGATGAACCTGTAAATAATAAAGTGTTTT 796312 37 100.0 34 ..................................... AATAAAATCCCTACTGGAATTGATGCACTTAAAA 796241 37 100.0 35 ..................................... TTGTTGTTTGTGGTGAGGTAGAACTATATTTTTTA 796169 37 100.0 34 ..................................... AACTACGACAACAATATAGAAACTTATCGCTGCA 796098 37 100.0 36 ..................................... CAAATTCATTCATGTATTCGAGGATTGGGGGGTAAG 796025 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 42 37 100.0 35 GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : AATGAATGTTGTTGTGTCTTATGATATTTCAGAAGATAAACGCCGCACAAAAATTCACAAAATTCTCAAGTCCTATGGACAGTGGGTACAGTACAGTGTATTTGAATGCTACCTGACCGATACTCAGTATGCAAAATTGCGATCGCGCTTGAACAAGTTAATCAAGCCTGAAACCGATAGTATCCTATTTTACTTTTTGTGTGCTTGCTGTCTAGGTAAAGTAGAACGTATTGGTGGGGAAAAAATTCGTGATGACTCTATTTTCTTTGCCGAATGCGCGGATGGGTAGGTGTTCAAAACGAAATTGCAGCAAGTAACCTTGAAACCCTCCTGCTGCAAGAGTTTTGGAAAAAATAGCTAAGAAAGTACCCGCGCACCTTACACAGCCTACGTTCTAGCTATTTTCCTAAAACTCAATCTCAATCGTAGATGCTATGATTATCTCGTCCGCGCTACCGAACCTTGAAAACCCTATACAAACTGTGTTTCAGGCTACCGCA # Right flank : ATATTTTTTTGTAATTCTAATATGGAAATTTTGGAATTTAAATTTCATCTACTCTTTAGAGGTCTATTCATTAAAATTTAGATCCCCGACTTCTCAAAGAAGTCGGGGATCTGGACACGTATAGAATTGCTATAAATCAACTAAAAATCATCACATTCAATAGTGAAACACCAATATCCAGCATCCAAAATCCGAAGCTGACTATGGTGTTAGGAACTTTTTTTTTAAAGAATTACCTCCTTGAATCTCCAGCATTTGTGCTAATTCAATTGGATTCAGTGACTTAACGAGGCTCAAACCAAGAGACTTACTAGAAATGCTTTGAGTGTAGCTAGCATTGAGATAACAAACGTATTGTGACTTTCCTGCAACATAACTTTGGAAGAAAGGCAAACTTAAAGCATTCATGTAACGACGCGCTTGGGAAGCATCGCCAATCATTTCAGCAGGTAATGATAATTGTTGATTTGTTGGATTAGCGTTACCAATGATGGAAAAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 2 1460499-1462661 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018223.1 Nostoc linckia NIES-25 plasmid plasmid1 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1460499 37 100.0 41 ..................................... AATCGATATTTGGACGGGCACTGCAAGCCGCAGCCGCAGCA 1460577 37 100.0 33 ..................................... AATTTATTGATGATTTAGGTAGATTACAACTCC 1460647 37 100.0 37 ..................................... ACCTACACCTTGGGCCATACCTGATTGAGGGATTTGT 1460721 37 100.0 39 ..................................... GAAACGGTAGATACCGTATCTATATAAACATTGACACTA 1460797 37 100.0 37 ..................................... AGTTACAGCGACTTTCTATCAATATCCAATTCCTAAA 1460871 37 100.0 35 ..................................... TTTCATCTAAGTGCTGATAAGTATCGTTATCCAAG 1460943 37 100.0 37 ..................................... GTCTATCCATAATCAAAATAAAGCGCGTTGCACGTAG 1461017 37 100.0 32 ..................................... ACGCCAGTAGAAGTCGCCTGATAGCTACTCCA 1461086 37 100.0 34 ..................................... CAATATTCAAGATATCTTGATTCAAAGACCTTAC 1461157 37 100.0 37 ..................................... GCTAGCCTAACCGCATCTTTTTGAGACAGCCCTCCTA 1461231 37 100.0 33 ..................................... TCATTAAAAAAAATATCAAATAAATATCTAACA 1461301 37 100.0 36 ..................................... AGAGGCGATCGCCCCAAACTCATCTTTTTCTAATAT 1461374 37 100.0 36 ..................................... AGAAGTAGACGGAACCCACAACCAGTTGAGCAATAA 1461447 37 100.0 34 ..................................... CAGGCTTCCACTGTTGGTTAAAGCCTTCCAGGCT 1461518 37 100.0 35 ..................................... CCGTAGACTTGGACAAGTAGCCCAACAGTTGTATA 1461590 37 100.0 35 ..................................... TAACGGTCTAACGCATGGGTTAACCCCTAAGGATT 1461662 37 100.0 36 ..................................... GTAAGTCCTTTGGTAACTGGTTAAACTCAGTATCTT 1461735 37 100.0 37 ..................................... GCGTTTGATATGGCGGACTTCGCTCCATCATGCTGCC 1461809 37 100.0 35 ..................................... TATTCTTAAAATATGCTGAAACTCCCCTTCAAAAC 1461881 37 100.0 39 ..................................... GAAATTTTTGATTCGCTCAATCACTTTCTCGTACTTAGA 1461957 37 100.0 40 ..................................... TAACCTTGCAGGATAGTTAAACAGGAAGTCACCCTGCAAA 1462034 37 100.0 37 ..................................... TTCAGAGGTCAGCGGTTCTGAATTACTCTTGCCTAAC 1462108 37 100.0 35 ..................................... ATTATGGTTTATAAGTGTTAAACAACCCAAACACA 1462180 37 100.0 37 ..................................... TGGATAAATTTGATTGTTCAAGCCCAAGGGTTCCTAA 1462254 37 100.0 35 ..................................... AGGTTTTGGGCATCAGGTACATAAAAAGAGCTTTT 1462326 37 100.0 34 ..................................... CAAGCATGAAAGACAAACACATTGCCATCAACTG 1462397 37 100.0 35 ..................................... GCAAACTTCCCCTTTGTGTAGAATTCCTTTCTTCT 1462469 37 97.3 41 .........A........................... TTGCTTTTAAGCAAGACAACCATCCTTGAGAACGAAAAATC 1462547 37 97.3 41 .........A........................... GCTGACAATCCGGGTAAGGTGACCACTTGTGTTATCCCCGG 1462625 37 94.6 0 .........A..........................T | ========== ====== ====== ====== ===================================== ========================================= ================== 30 37 99.6 36 ATTGCAATTGATCAAAATCCCTATTAGGGATTGAAAC # Left flank : ACTCCTACTCTCGTTAAGGTTTGGCCTCACCCAATTCGCCGAATCGTTGGAGACTTGGATCGTGTAGACAAAATTGTACAGATGTTAGCTACTAAGTAAAAAGTTTAAGTTTTATTAACAGTTTTAACGTCTTAGATGGAAGTGTTGAGTCTTGAGTTAGGAATTGCGTCCTTTCTTTTATCCCTCATCTCGTTTGCTTCCTTATCTCTTCGTCCCCACTCCTGTCTTTTTGAAAGTAAGCAGCTTCACAATTAGACTAATTTTTTTGCTGAGTGCGCGGATGGGTAGGTGTTTATAAGCAGGCGGCGACAAAAATGCCTTAATTGCTTTCTGTGTAAGGATTTGGCGTCAATAGCACATGAAACTCATCCGCGCACCTTACTGGGCTTAGCTTTCAGCGATTTACATCTACTAAAATTACAACTTCTTGTGTTATGATTACCCCATCCGCGCGACAGAACCTTGAAAACCAAATATCACACTGCTTTCAGCCAACAGCG # Right flank : TGCCAAGCGCGATCGCCTGATATTGATATTAGTTAGCAATAGGTGGAGCCAGCGCTACACGCGGAATACCGCCACCACCAACGCTATTTGCACTGTTGTTTTCAACAATATAAAGTGATTGAAATAATCTCATCACTTCCTCATAAAAATTACCATTTTTATCTTTCATATCATAGCCATATATTTGATGAAACTCTTCGTTAACTCCTTGTTCAACTGCAATATCATGAGAGTCCCATCCTGAATCATCAACTACATAAGCCCCATAATCTTGTAGTGCATGAAAGATTTTTTTAGCTGCGGGTGTTTGCAACTTGAGAGTATATGTCCTTACTTTTGGCGGAATGGCTAATAAAGTTCCTTGCACAAGGGCAGGGTTTTTACCACCATAAACTTGAGCTGCATAATTATCAGCGCGATTTGCTGGCCAACGATACCCAGGAATAGAATTTGTGTAGTAAAGATATTTTTTAGCCCACAGCAGAACTTTTAAAGCATGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTGATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 1705510-1703947 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018222.1 Nostoc linckia NIES-25 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1705509 37 100.0 38 ..................................... GTAGACAAAATTTTTGAAAATGCGATCGCGCACATATC 1705434 37 100.0 37 ..................................... GTTTACGGTGGGTGATTCCGGTGGTGCTGATGGTATT 1705360 37 100.0 36 ..................................... CTTTTTATTAATCTCCCTGATGCAACCGCGCAAAGA 1705287 37 100.0 35 ..................................... AACCATTATATCCCTTCTAATAGAATCGTAGGATT 1705215 37 100.0 35 ..................................... AAGTTTCACACTACTCAGAGTAAGCATCCCACATC 1705143 37 100.0 38 ..................................... TTAAATCAGATAATGTAAAATCAGAAGGATCTAATAAA 1705068 37 100.0 35 ..................................... TTGCTTTTAATGCCTCTATTTCTGGATAATCACCC 1704996 37 100.0 32 ..................................... ATCTACTTCATTTCTATTGCCTTCAGGCGCAA 1704927 37 100.0 38 ..................................... CCAGCAATTTTGTAGTGAATTTTGATATCAACCAGACT 1704852 37 100.0 34 ..................................... TAATTGTAAGTTTAATAAATGGGAAGGGTTTAAG 1704781 37 100.0 33 ..................................... TTCCATTTCATAAACAGTATCTTCTAAAGATTT 1704711 37 100.0 43 ..................................... CCTCATATCCCGGCCGGGATGATTCCAACCTTTTTAAGGGAGA 1704631 37 100.0 37 ..................................... CTACGGTAATGCCCTCTGGCGCGTGTTGCTGAAGCGC 1704557 37 100.0 35 ..................................... AAATGGTTTACTGGTCTAGCATCTACTGGGATTGC 1704485 37 100.0 37 ..................................... CCAACAACAGGATTTTTCTTGGGCTTGATTCCATTGC 1704411 37 100.0 35 ..................................... ATTGATTCTCCTTACTGCATTATCTTTAGCTCGTC 1704339 37 100.0 35 ..................................... AAGAGTTGATGAAGAATGCCAACAAAGTTATTAAA 1704267 37 100.0 33 ..................................... GGGGTAAATATAAGTCAGTGTCGTCAAGACACT 1704197 37 100.0 35 ..................................... TGAAATATAATAAAGCCAAATCATTCACGACAAAA 1704125 37 100.0 33 ..................................... AAATCAATGACTGGGTAGTTGTTTAAATTGATC 1704055 37 100.0 35 ..................................... CAATACCTCGCCTTTTTGCAGCAGCCCTAAATCCT 1703983 37 91.9 0 ...........TC.......................A | ========== ====== ====== ====== ===================================== =========================================== ================== 22 37 99.6 36 ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : GTTTTCATCTTGCTCAAGTTGCTCGTATCCGACTCACAAGTTCTGAGATTTTAGCCAGTTTACGCCATCCAACTGGCTTTGTTCGAGAAGCGGCGATCGCATACTTGAATATGGTTTCACAGCGCGTCCTCTTCCAAATCCTGCCCCAATTACAAAACGATCCACACCCTCTAGTAGCCGCTCAAGTTAAGGAATTACTCGAAAAATACCAATTCAAAAATTACAATAAATAGTGGGAAGTTTACGTCTAATCAGATTAATCTCTTTGCTGAGTGCGCGGATGGGTAGGTGTTTGTGAGCAGCTAACTACAAAAATGGCTCAATTGCCCTCTATGTAAGAATTTGACACCAATAGAATCTCTCAAGCATCCGCGCACCTTATTTGGCCAAGCTTTCAGCGATTTGCATCTAGTGAAATTACAAATTTTTGTGTTATGATTACGCCATCCGCGCAACAGAACCTTGAAAACCGAATATCACAGTACTTTTAGACGCCCGCG # Right flank : CTTCTCACACCTTCATTCTTTGTTAGCCTAGATAGGATAGTAAAACTCAAACAGCATTAGGGATATTCATGTACGTATTAATTGGTGGGGCAGGTTTAGTGGGGCTAAGTTTAGCGCAGAAGCTGGTAGAGTTGGGGCATACTGTTGGGGTTATTGATATCGATCCTACCGCTTGTCGCTATGCCCGCGAACAAGTTGGGGCAATGGCTTTTGAAGGAAGCGCTGTGAGTACAGAAGTATTGTTAGAAGCTGGGATTCGCAAAGCCAGTTCTTTGGCTGCTGTCCTACGCAGCGATGCCTTAAACTTGGCAATGGTAACTCTTGCTAAACATTATGGCGTTCCTCATATTTTAAGCCGGATGCGCCACCCCGATTTTGCTCAACCCCTGCGTCTGGCTGGAGCGAACCATATTATCAGTACTGTTGAACTATCGGTTTCAACAATGGTAAATGCCATCGAGTATCCCCAAGTAGAATCGATGATGCATTTTGAGCAGGGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 2546060-2544324 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018222.1 Nostoc linckia NIES-25 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================== ================== 2546059 37 100.0 38 ..................................... AAAAATAAGGAAGGGATTACCACCCATGACATTCTCCT 2545984 37 100.0 39 ..................................... GTGCATTCTAGAAAATTACCAATAACCTTAAAATCCCAA 2545908 37 100.0 34 ..................................... TCTAGTTTTTCAATCAAAGACAGGGTAGCGTCAA 2545837 37 100.0 37 ..................................... ATTGAAATTGTGACCGCATCTCCCACGGGCGACCAAA 2545763 37 100.0 33 ..................................... TTGTTGTTGCTCCTTTTCTAAAGCTTTTTCAAT 2545693 37 100.0 34 ..................................... CCATAACCAATACTTAACACCCAATAACCTAAGA 2545622 37 100.0 38 ..................................... CGATTGGTCGATACATTAGCGCGGCGTTGAGTCCCTTA 2545547 37 100.0 36 ..................................... AGAAAATGGCAATGGCGATTTGTAGACGAATTTTGT 2545474 37 100.0 38 ..................................... AAATATGCTTTTCGCGCTCCAGCCGGATTGTACGCTAA 2545399 37 100.0 38 ..................................... CACCCCAGGATCACCCCTCGGATCACCCCTGCAATCTA 2545324 37 100.0 50 ..................................... TTGGAGATTGACGCTCATAAATTCCTGTCTGGTGATATCTTAGCAAAACT 2545237 37 100.0 40 ..................................... TTGGAGATTGACGATATCACCGTCAGTTACGCGATTGCAA 2545160 37 100.0 35 ..................................... GAGCATCATCACCCCCGGCTGAGATTTCCGCAGGC 2545088 37 100.0 33 ..................................... ATCTAGGTAGGGCGTGCTGACTATTGGCTTTTC 2545018 37 100.0 37 ..................................... ATTGACAACCTGATCGATGAATATCGCAATCAGATAG 2544944 37 100.0 35 ..................................... AATAGTGTTTACGGTACGAGTAGCCCACTGAGAAA 2544872 37 100.0 35 ..................................... TTTTATGGAACCGAGTATCGCCCAAATTTTTGGAA 2544800 37 100.0 33 ..................................... CTGATTGGCTTTGTGATATTGATTTGGAAGAAC 2544730 37 100.0 32 ..................................... AAATATTTGACCTTGTACAGACAACTCAAATA 2544661 37 100.0 40 ..................................... AACTGACTGGGGATTCAGGGTAACTGATTTATTCTTCTGG 2544584 37 100.0 37 ..................................... TAGCATCTCTTTGATGTCATCTGGTAGTATTCGCATT 2544510 37 100.0 35 ..................................... AACAGCGTAAATTTTACTTCTCCGGGACAACAAGT 2544438 37 100.0 41 ..................................... TGCCAGGACATTACAACGCTATTGGGTTTGACCCGTATTAC 2544360 37 91.9 0 .....................C.C............T | ========== ====== ====== ====== ===================================== ================================================== ================== 24 37 99.7 37 ATTGCAATTAACTAAACTCCCTATTAGGGATTGAAAC # Left flank : TTGGACAGCTACTCAGGCACTCAATAACAGTACATTACCTTATGTTGTGCAGTTAGCGAATTTGGGAATTAAGGCATTGGAAGTTAACCCAGCCTTAGCTAAAGGTCTAAATGTGCAGAATCATAAACTAGTGCATCCCGCTGTGCAAGAGGTTTTTCCTGATTTGGTAAGTTAGACCTTGCACGGGCCAGGGTTAGAAGCTGTGCAAGTGTTAGGCGATCGCCTATCTTAATGGTGGTAATCTTCATCAATTAGACTAATTTCGTTGTCAAATGCGCGGATGGGCAGCTGTAGAAAATCAAACGAAGCAAAAAATGGCTGCATCTTAATGCGTACAAGCTTTTGAGGACTATAGGACTGGTAAACCATCCGCGCACCTTACACAGACTGAGTTTCAGCGATTTGCATCTGGTGTTACTACCATCTCCTATGTTATGATTCACTCATCCGCGCAACTGCACCTTGAAAACCAAATACAGCAAGCCTTTCAAGTCTCGGCT # Right flank : ATTGTAGGCAAAACTACAGGGTTAGCTGTTGCAATTACGATTGTGCCGATACGCTGGCATTTTATGGCATTTTTGCGCTACTGCCCTAAGATGTAGTACCATCCGGAGCTTGTTACAGACTTCTCCCATGTCCCCACGCCCATTTTCATCCATTCAGTGTATGGCGATCGCTTTCCTCTTTGGATATGCTTTAAGAGGTATTAAAACTAGGCTCCTATTTTTCGGTAATCGTATCTAAGCAATTGTAATTATTAAACTGACAACCTTGACAAATTTAATGATGAAATCCTTTTCTATTCCCTTAATCCTTGTGTTGAGCGCACTTGCTATCCCCCAGAGTGCCTATGGTAACGAAGAAAACTTCCCAAATGCAACAGGCGATGCCTACGGCGGGCTGCGCCAACGCAATGAGGCTCAAGCTTTATTGACTCAACCCGCCACCATTAATACTAAATGGAGAAATTTTAGCGGACAGACTCTTAATCTCAGACCAACTTCCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //