Array 1 45216-44887 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRMH02000034.1 Acinetobacter baumannii strain ORABRicT contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 45215 29 100.0 31 ............................. TACTATTATAATGATCTAAACCCATTACAAC 45155 29 100.0 31 ............................. TCATCAATAAGTTGGCCTTGATTTAAATAGT 45095 29 100.0 31 ............................. GATACAAACGAGTTCGCATCTCGACCAGAAG 45035 29 100.0 31 ............................. TTATCCAGATAAAACCATATCTACAAAGTGG 44975 29 96.6 31 ............................T CAACCTGAACACAGACATACATGTTCTATTG 44915 29 82.8 0 ...GC...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 6 29 96.6 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : | # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 134-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRMH02000037.1 Acinetobacter baumannii strain ORABRicT contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 133 28 100.0 32 ............................ TAACGAGCATGGTTTAGATTTAAGAGATGGTA 73 28 100.0 32 ............................ TTTTGAACTTGTGCATTCTCAATGATTGTTTT 13 13 46.4 0 .............--------------- | ========== ====== ====== ====== ============================ ================================ ================== 3 28 82.1 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : C # Questionable array : NO Score: 4.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.10, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5224-7406 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRMH02000037.1 Acinetobacter baumannii strain ORABRicT contig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5224 28 100.0 32 ............................ AATCCTATAAAATTTAAAAGTGTTGATTTTAT 5284 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 5344 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 5404 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 5464 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 5524 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 5584 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 5644 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 5704 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 5764 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 5824 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 5884 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 5944 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 6004 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 6064 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 6124 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 6184 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 6244 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 6304 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 6364 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 6424 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 6484 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 6544 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 6604 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 6664 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 6724 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 6784 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 6844 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 6904 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 6964 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 7024 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 7084 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 7144 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 7204 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 7259 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 7319 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 7380 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 630-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRMH02000140.1 Acinetobacter baumannii strain ORABRicT contig_140, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 629 29 89.7 31 ............CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 569 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 509 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 449 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 389 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 329 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 269 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 209 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 149 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 89 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 11 29 96.9 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : A # Right flank : T # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //