Array 1 305259-304454 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPMY01000002.1 Salmonella sp. S026_02752 NODE_2_length_421655_cov_72.736859, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 305258 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 305197 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 305136 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 305075 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 305014 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 304952 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 304849 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 304788 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 304727 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 304666 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 304605 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 304544 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 304483 29 96.6 0 A............................ | A [304456] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 323494-321391 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPMY01000002.1 Salmonella sp. S026_02752 NODE_2_length_421655_cov_72.736859, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 323493 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 323432 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 323371 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 323310 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 323249 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 323188 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 323127 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 323066 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 323005 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 322944 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 322883 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 322822 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 322761 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 322700 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 322639 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 322578 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 322517 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 322456 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 322395 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 322334 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 322273 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 322212 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 322151 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 322090 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 322029 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 321968 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 321906 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 321845 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 321784 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 321723 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 321662 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 321601 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 321540 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 321479 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 321418 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //