Array 1 189930-190324 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAS01000013.1 Nocardiopsis baichengensis YIM 90130 Scaffold6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189930 29 100.0 32 ............................. CCGCCCTCGCCGCCGACCCCCTGAACGCCTGG 189991 29 100.0 32 ............................. TCCCAGCACCTGCGGCGGCACACCGACGAAGC 190052 29 100.0 32 ............................. AACCCCCGCCGGTGGGCGCTCATCCGCGACGA 190113 29 100.0 32 ............................. TACTGGGACGAGATCATGTCCGCGGTCTCCGG 190174 29 96.6 32 ............................C TCAACCTCGTCACCCTCGTTGTCGTCGCCAGC 190235 29 96.6 32 .....T....................... ACGTCCTCCACTGCGGCCTGGCACCAGGCCTG 190296 29 79.3 0 ..G.........TGT..........G..A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GCAAGCTCCGCGCAGGCGGAGATGGACCG # Left flank : CGCCGCCTTGCCATCGCCGGCGGCATCACCACGGTCGTCCTGCTGAGCGGAGCCGCCGCCTGTAACGGCGGCGGCGAAGGCGGCGGTGAGAACTCCGAGCAGGAGGAGATGCAGGAAGAGGACGAGATGTCCGAGGAGGACGGCGACTCCATGCAGGACGAGGGCATGGAGGGCGAAGACGGCGAGATGCAGGACGAGGAGATGGACGACGAGGAGATGCAGGACAACGGGGAGGAGATGGAGGACGAGGGCTGACGCTCCGTCTTCCTTCCTGCTCCAATTGCGGCATGCGACCCCGCCGGAGCCGTTCGCTTCCGAGAGCGTTGCCACACAGCCCTCGGAAGCGCACCTGTTCCGGCGGGGCACAGCGATCTACTGCGGGAGACCCGTGTCACCCGGTGCTGCGCCCCTCCGCATTCAATGCGGACAGTTCCTGTCCACTAAGAGTGCGCGATTGGTCGCTTTTCGATAACGTCCCACATAAGCCCAGGTCAGTAAGT # Right flank : ATTGCCGACTCTTCGGGTGGTGCTTACTCCTTGGACTCGGTTGAGTTGTCCAGGATCAGGTCCGCATGGTCTCTCGGGGCGTGGCGGGCTGCGAAGGACTCTTCCTGGGTCGCCCACATCTCCCGGTAGGGCCTGTACAGTTCTGCGTCCCACCTCGAGTCGAGGCGCCTTCGTCGCACTTCGGGCGGGGCCTCCACCCACACCAGCAGGGACAGGTACGGGCGCAGCTCCTTCGCTCCGCAGCCGCAGCCCTCGATGACGAGGGTGTCGGCGACCTCGGCGCCATCCCAGCCGCCCGGGTCATCGGGGGACCAGTCTCCGGTCTCCCAGTCCCAGCGGCGCCAGCGCGGGCCGCGTCCCTCGGTCAAGGGCTCCATCACCCAGCGGCGGACCAGGGGAGCGGCCGCCTCCAGCCCTTCCCACCCCGGGTACAGGTCGTCCATGTGCACGACCGGGCAGCGCAGGCGCGCCGCAAGCGCCTCGGCCAAGGCCGTCTTGCC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAAGCTCCGCGCAGGCGGAGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 81247-81763 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAS01000012.1 Nocardiopsis baichengensis YIM 90130 Scaffold5_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81247 29 100.0 32 ............................. GTGTCGCTGCGCTGGGCGATCTGCACGATCTT 81308 29 100.0 32 ............................. GGGGCGGGGAACCAGCTAACGGCCAGTCGGTA 81369 29 100.0 32 ............................. GCAGCCTCACCCGCCGCCGGGGCCGCCGTGGA 81430 29 100.0 32 ............................. GGGCAGGAGCCGCTGCACATCGAGGTGCAGAC 81491 29 100.0 32 ............................. CATGCAGACCTGATCTGTCGTCTCTACGGGCT 81552 29 100.0 32 ............................. TTCCTCGGCCCCTTAGAGGCCCGTGACCTCGG 81613 29 100.0 32 ............................. GAGTTCATGATGAGTGACCCCTACGAGGAGTG 81674 29 100.0 32 ............................. AGGTCTGGCGCCGGATCCAGGACACCGCCTCC 81735 29 93.1 0 ..........................TT. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTGAGCCCCGCAGGCGCGGGGATGGACCG # Left flank : CGTCCGCTGGGGGGCGACGGCCGAAGTACTGGGAGCGGTGGACGCGTCCCAGGCGAAGGGGGAGGAGGCGGTCTACCCGAGCGAGATCGCCCTGTCGGCCTCGGGAGAGCGGCTGTACGTGGCCAACCGGGGGGCGGACACGGTCACGACCTTCGCGGTGGAGGAGGGAGGGGCGTCCCTCCGCTTCTTGGAGGAGGTGGAGACGGGCGGTGAGTGGCCGCGCCATTTCGCCATCGTCGACTCCCACATCGTGGTCGCCAACCAGAACAGCGGCACGATCACGAGCCTCCCGATCGACGGCTCGGGGGTGGCGCAGGCCCCGATCGACCGCCTGTCCATCCCGGACCCGGCCTGCATCCTCCCGGCGGGAGAGTGAGCGAAGGCGACCAACTTCCATCGGCCTGAGACTTGGGAGGGGAATTGAGGACAGGACCTGTCCCAAGAGGGAGCGACTTCGATTGCTTTTCGGTAACGTCCGCCATCAACCCAGCTCACAAAGG # Right flank : GTGCCGTGTCAGGTTGGAGAGGCGCCGGTGTAGATCCGCACGTACTCGGCAGAGGTGGGAGGCGGATGTTCCCAGTAGATCCGCACCCAGCGGCGCGCAGCCCAGAACGTAGGGATGGACAGGAATGCCGCCCAGGCGGTGTTCTGGGCACGGGCTCCCGCGCACCCCTCGGGCTGAGAGCGCCAGTCACGATCACTGAACAGCGAGGCCACAGGTGACTCGCAGGGCGCTTCGGCTTTGAACTGCGAGTCGAGATCCCGACCCGGTGACCACACAAGCAGGACCAGCATAGGGATACTGGCCAGGGCCATCAGGAGGAATGCGCGCACCCGAAGGCGCAGGCGATGTCGAAACTCGGCACGGAGCGTATCGGGATCGTCGGATTCGGTGGGCATGGCACCAGACCGTACCGCGCGAAAAGGCACGAAAGACGGGTCAGGGCAGGGATCCCGCACTGCGCCCGCGGCTTGCGCGGCCCTGGGAAGCCTGGGCCCTGTGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCAGGCGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 88880-89519 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAS01000018.1 Nocardiopsis baichengensis YIM 90130 Scaffold7_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 88880 30 96.7 31 T............................. CTGCCGAACCTGTGGGTCTCCCCGAACGGTA 88941 30 100.0 31 .............................. CTGCCGAACCTGTGGGTCTCCCCGAACGGTA 89002 30 100.0 31 .............................. TTCAGGCGGGTCGCGGCGTGCATGTAGTCGT 89063 30 100.0 31 .............................. ACGAAGGCCTTCGCCGCCTTCGCCGCCTGAC 89124 30 100.0 31 .............................. TTCCGCCAGGCGTTTCCACCGGACCGCTTCG 89185 30 100.0 31 .............................. GCCACCGGGACATGTCGGGCGGGAGGTCGGC 89246 30 100.0 31 .............................. GCGGTCGCGCGGCTGCTCACCGGCGCCAGTC 89307 30 100.0 31 .............................. GCGTCGGAGATCGCGGCCGTGAGCGGCTTGA 89368 30 96.7 31 G............................. GACGGCCGCCGGATCCGCTTCACTACGCGCA 89429 30 100.0 31 .............................. CGCTGGCAGAGCAGGCCCTGCTCACCCGGTA 89490 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 11 30 99.4 31 CGCGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CCCAGGAGCTGATCGGGTCCGGGTACCGCAAGACGCCGACCCCGACGGCGGGCGGCGAGGGGCGCGCGGACGTGTCGCAGATGCCGCGGGCGGAGCTGGCCTCGCTCATCGAGCAGCTGGACGAGCAGATGCACCAGGCCGCCGCGGACCTGCAGTTCGAGCTGGCGGCGCGCCTGCGCGACGAGATCAAGGAACTGAAGCGCGAGCTGCGCGGCATGGACGCCGCCGGCGTGGAGTGAGCTGGGGCGTCCGCAGCCCCAACGGCCGCGCGACCGGCCGGGCGTGCGTACGCCCTGCCCGCAGCACTGGGAGCCCGTCGGCTGGATGAATCCTGAAGAGCACCGCGACGTGGAGGGCGAATCCGATGAACGGCCTGCCCCTGAGGGATGACGAAGGAACAGTGCATGCGGAAAGTAGTCATCTGACTACAGATACTCCTTGTCGAGGGCTGGTTTTTAATAAAGAAACGGTAACGCCCTGAGTTCTCGCAGGTCGAAAAG # Right flank : ACCATGCGCGGGTCCGGGTGGATGCCCAGGGCGCGATGAGCTGAACCGGGTTTTGTAGAGTCAGTTGTCCTTGTTTCAGGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 24250-24889 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAS01000023.1 Nocardiopsis baichengensis YIM 90130 Scaffold11_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 24250 30 93.3 31 ..........T..................C CCATCGGCCTGATCATCATCGCGATCGCCGC 24311 30 93.3 31 ..........T..................A TCATGTTCCGTCGCAACCCCGTAATGAGCAT 24372 30 100.0 31 .............................. CCCTCTTCTCCGGCGACATCACCGGTAGTGA 24433 30 96.7 31 .............................C AGGACACGGAGCTGTTCTACGACGACCCGGT 24494 30 100.0 31 .............................. GAGACACCCATGCCTGAGCCCACCACCGCCG 24555 30 100.0 31 .............................. ATGGGGTGCAGGACTACGCCAGGTGCGAGCT 24616 30 96.7 31 .............................A CCCGCTGACAGAGGAGGGGCGCCCTAATGAG 24677 30 96.7 31 ..........T................... ACGAACGACCCGTCCATCCCACTGTGAGGCC 24738 30 96.7 31 ..........T................... GCACCGCGGTCGCCCCTTCCTCCTCTTCTAG 24799 30 96.7 31 .............................C TGTGCGCGTCCCTGCCCGCGACCCCGCCGGG 24860 30 80.0 0 ...............C.....CG..G..GC | ========== ====== ====== ====== ============================== =============================== ================== 11 30 95.5 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GGTCACCGCCAGAAGTACACCCGGGTCCGCGTCACCGGCATCGCCAAGTAGAGGAGGGCTCCCCGATGGCACACAAGAAGGGCGCATCGTCCAGCCGTAACGGGCGCGACTCCAACGCTAAGCGGCTCGGTGTCAAGCGCTTCGGCGGTCAGTCCGTCAAGGCCGGCGAGATCCTGATCCGCCAGCGCGGGACGAAGTTCCACCCGGGCGACAATGTCGGCCGCGGTGGCGACGACACTCTGTTCGCGCTGGTCGAGGGCACCGTCGAGTTCGGTAACCGTCGCGGCCGCAAGGCCGTGAACATCGTCCCGGTCGCCGCCCAGTAGCAGGCGCCGAGCGACGGCAACACCCCGCCGAAGGGCGGGCCGGGAACACCACCCGGCCCGCCCTTCGCGTATACGGGGGTGTGGAGCGACGCAGGGGCTGGACGGAAGGAGGGCCGAGCATGCAAAGTTGCGTGAGAAGGCGTCTCCCCGGAGGAAAGCCCCAGCTCAACGAGA # Right flank : CCGATCGCGCCGCAGCGGTCGCACCGCTCAGATGGACGCGGCCGAAAGTTCCACCGCTCCAGCGGACACGACCCCAGTGGGCGGCTTCAAGGGCGTCTTGGGCGTAGGGCGGTGAGTCATCTTCGGGCCGCGCCCGGCCTCTGGGACAGCTCCCGTACAGGCGGGCGGCGCTGGGCCGCTCCTGTGGTCGTGGAGCCGTCTTCCCGGTGCGATCGGTCTCGCTGCCGTCCAAGACTTCGCCGTGGTTTGGTGCGACCGTCTAGAGTATTGGGCGGTGGATCTTTCCTCCCCGTCCGCATCGGAGCGGCGGGTCGAGGGTTTCCACGCGGCAGATTTTCCGCGCGCCGAAGTGCGCGCCGGCGCGACTCGCACGGGGAGAACCAGGCACATGCCCGATTTCGTCGATGAAGCGGTCTTGCATGTCAAGGCCGGTGACGGCGGGCACGGCTGTGCCTCCATCCACCGGGAGAAGTTCAAGCCCCTCGGCGGCCCCGACGGCG # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : CTGCTCCCCGTGCACGCGGGGATGGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 237354-237994 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAS01000020.1 Nocardiopsis baichengensis YIM 90130 Scaffold9_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 237354 29 100.0 32 ............................. TGATGGCGCACTTCGGCTACGCACGGTGGGGC 237415 29 100.0 32 ............................. CCGCAGCCCGTCGATCCCCGCCTGGATCGTGT 237476 29 100.0 32 ............................. GAACTGAACTCCCTTGAAGCCGCTCGGGAGCG 237537 29 100.0 32 ............................. CTAAAGGCTATTTCACGTCGTCGAAAGTCCGC 237598 29 100.0 32 ............................. GCCTAAGGGAAAGACGCCGGATACGGCCCAGA 237659 29 100.0 32 ............................. TCGCCGGCCAGACTCACGATCTCGGCGATCTG 237720 29 100.0 33 ............................. GCCTCATGCGGGCGAATCTCATCCTCGCCTGCC 237782 29 89.7 32 TGA.......................... AGGCCGGCCTGGTCGCGCTGCTCGGTCAGGGC 237843 29 96.6 32 ............................A CAGGGGAGGCACCCAGATGGACACCGCCGCAG 237904 29 100.0 32 ............................. TCTCCGGCAAACCTGCTGTTGATGCACGGCAG 237965 29 86.2 0 .......................A.GA.G | G [237982] ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.5 32 CTGCTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : CGGCCATGCGGACCGGGCTGATCGACGAGTACGCGGTCGTCACCCACCCGGTCCTGGTGGGCGGCGGCACGCCGTTCTTCACCGCCTTGGACGACCGGGTGAGCCTGAGCCTGGTGGAGACCCGGACGTTCCCCGACGGCGTGGTGCTGAACAGGTACGAGACCAAGCGCTGAGTTCCCGACGAGCACCATCGATCCGGGATCGCTCCTTGGCAAGGCCGAATTTTCGCCCGTTTGCCTGGCGGCCCCAGTGGGAGCCCAGGAAAACGGTCGTCCTGGAAGCCGTCGGCTGACGATCAGCGCGACAATCCCGCTGCGGGCGCCGGGAGTGTAGAGCCTAGCGCCTGCCCAGGCTCTCTGACAGGGAGCCTGGGCAGGCGGCATGCTACAAGGATCGGGGCGATTTCGGGGTGCCGGTGGCTACGCTGGCGGTGACGGGGGGAATGAGCACAGTTGTCGAAAACAAGAGATTGCTTGGTAAGTTGTCCCAGGTCACCGAGT # Right flank : GATCGGATTGAGGAGTGGCTGCTTATCAGGCGGAAGCCTTGCAAATGGCCGGATACGGACAGTGAGGGGGACTGTGGCATGACGAGGTCTCCAGGTGCGTTTGAATCTGTCCATGTCCTACGAGGAGTACGCCCGAGAGCTCGGCGCCGACCTCACTGATGCGGCGCGGTCGGTGTGGGCCAAGCACGACTGGGACTCCGGTGGCTGGCTGCCCCTTTGGCGGCACATGGGCGACAGTGCGGGAACGGCGGCTTACCTCTGGGATGAGTGGCTCCCGCCTCAGGTCCGGGCCCGCATAACTGAGGCCCTTCCTGGCGGTGAGGCCGACGGGCGGAGGCTGGTGGTCTGGCTCGCGATGGTGCACGACATCGGTAAGGCCACCCCGGCGTTCGCCTGCCAGGTGGAAGGGCTCGCCGAGGCCATGCGCTCGCAAGGGCTGAAGATGGGCTCGGCCGCTCAGATGGGCAAGGATCGATCGCTGGCACCCCACGGCATGGCCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 247330-249176 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAS01000020.1 Nocardiopsis baichengensis YIM 90130 Scaffold9_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 247330 29 100.0 32 ............................. CAGTCGAGCAAATCATTTTTGCCTTCAGTGTA 247391 29 100.0 32 ............................. CGCGCCAGCGGCCGTCCTCCAGCTCGTCGAGG 247452 29 100.0 32 ............................. GGCAGCGGGCGGCGTTGCGGGCGGTGACCGAG 247513 29 100.0 32 ............................. GCCCACAACAGCTGCGAGGACCGGCTGGGCCT 247574 29 100.0 32 ............................. CCTGCCAGGGGAAATCGCCGGGGAACCCGGCG 247635 29 100.0 32 ............................. GACCGCATCGTCTCCATCGCCCTGGTCCGCCT 247696 29 100.0 32 ............................. AGGTGGGACAGCACGACAAACCTCCAGGTGGA 247757 29 100.0 32 ............................. TGGTGGGGCTCCTGCTGCTGGGCGATGCGCAC 247818 29 100.0 32 ............................. CCCGCGGTCATGTTCTACCGGCTCGTGCCGCT 247879 29 100.0 32 ............................. ATGCAGAGCCTCCCCATGCACAGCACCCGACG 247940 29 100.0 32 ............................. TGGGGCATCGCCGCCATCGACACGGCCCTGCA 248001 29 100.0 32 ............................. GGGCGCTGGTCGCCGCCACCGAATCCGCCACC 248062 29 100.0 32 ............................. CACTGGGACCGGGCGATCGCCACCCACGAGGC 248123 29 96.6 32 ............................G TCTACTGGGACGACGAGAAGCAGGGCACCCGG 248184 29 100.0 32 ............................. CTGTCCACCCGGATGGACCCGGCGTAGTGCCC 248245 29 100.0 32 ............................. GTGGCGTCCGCGGTCATCTGCTCGGTCATCGA 248306 29 100.0 32 ............................. CACCAGTCGCTGCTCGATCTGGCCTCCGCGTC 248367 29 100.0 32 ............................. GATAGGTCCGCCTCCCGCCACGCCACCCGCGA 248428 29 100.0 32 ............................. AGCAGCTGGGCGATGCGCACCCTGACCAGGAC 248489 29 100.0 32 ............................. CTCGCGGTGGGTGTGACCGGGCTGATCGTGTC 248550 29 100.0 32 ............................. TGGACTTACGGAACACCAGGCGGCGGGATGTC 248611 29 100.0 32 ............................. GTCCCCTTCGCCGACGTGGCCGAGCTGACCGG 248672 29 100.0 32 ............................. GGTAGAGCGCGTGGCGCATGAACGGCTGCGAG 248733 29 100.0 32 ............................. GCGGCGCGTAGGACAGACGCACCTGCGAGTCC 248794 29 100.0 32 ............................. GACGGAAGGGCTGAACCATGACAGACGACGCC 248855 29 100.0 20 ............................. CGGTTGTCCTCGGCCCGGTC Deletion [248904] 248904 29 100.0 32 ............................. TAGTCGGCTGGAATCGCGACATTGCAGGTAGA 248965 29 100.0 32 ............................. GCGCGGTCCATGGGCCCGGTGACCTCCGCGGC 249026 29 100.0 32 ............................. ATCGGGGCGCGCCTACGAGAACTGCGCCTGAG 249087 29 100.0 32 ............................. TACCGGCAGATGAACCGCCTGCTGCGACTGAT 249148 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.9 32 CTGCTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : GAGGTCGAGGACGCCGCGGATCAGGTCAACCTGCAGAGCGACGGCGGCGCGGAGTTCGTGTCGGGGATCAACCACGGGGTGATCTGGTGACGGTGATCGTACTGACCACCTGCCCGGCGGGGCTGCGGGGGTTCTTGACGCGGTGGCTGATGGAGATCTCGGCCGGGGTGTTCATCGGCAACCCCTCGGCCCGGATCCGCGAGGTCCTGTGGGACGAGGTGCGCGCGTACGCGGGGGCCGGGCGGGCGCTGCTGGCCTACAGCACTGACAACGAGCAGGGGTTCACCTTCGAGACCTTCGACCATAAGTGGCGGCCGGTGGACCACGAGGGCCTGACCCTGCTCATGCGTCCCCACCGGCAGGACCGGGAAGAGGCCGCCCAGCCAAAGCCGACTTCCAAGGGGTGGAGCAAGGCATCCAAGCGCCGCCGGTTCGGAGGGCGGTGAGTCGAAGTGGCACGACACGCCGGCGTGCGCTTGTGAAAGCGCAGGTCGGAGAGT # Right flank : CAAATACGAGCGCGGGCGCCCATCGCGGTGAGCAGGGCGGCGTTGTAGCCGGTGCCGGCTCCGATTTCGAGGACGCGCGCGCCGGGCTGCACGTCGAGCTGGTCCAGCATCATCGCGACGATGGTCGGGGTCGACGCCGAACTCAGGCACTCCCCGTCCGGACCGAGCTTGGTGGGCACGTTCTTGTCGGCGTAGGCCTCTGCCAGGTCGGCGTCGGGGAGGAACAGGTGGCGCTGGATGGTGCGCAGCGCCTCCTCCACCCCGGGGTCGGTGGCCCATCCGCCCTCGCGGATCCGGTCGACGAGTCGCTGCCGCATCTGGGCGGCGCTTTCGGTAGAAGCCAACTCTCTCCTCATTCTCCTTGGTCGCTGACGGTCGGCTAAGCGGTGAGCAGACAGGCGTCCCACGCACTGTTTCGGGCGGTGGAGCAGAGCGCGAGCGCCTTGCCGGAGGAGCCCTCCAACAGCCCGGCCGCGGCGCGCCTTCCACTGGCGGAAGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 61533-62109 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAS01000024.1 Nocardiopsis baichengensis YIM 90130 Scaffold11_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 61533 28 100.0 33 ............................ GAGCCCTGACCCGATCGAGTCCGTGTAGACGAT 61594 28 100.0 33 ............................ GCCGTCCGGCGTGGTCACCTCCGCCTCCAACCA 61655 28 96.4 33 .........................C.. CAGGATCGCGGTCGCCGCGATGTGCCCGGCGAG 61716 28 100.0 33 ............................ GCCGTCCGGCGTGGTCACCTCCGCCTCCAACCA 61777 28 100.0 33 ............................ CAGGATCGCGGTCGCCGCGATGTGCCCGGCGAG 61838 28 100.0 33 ............................ GCCGTCCGGCGTGGTCCCCTCCGCCTCCAACCA 61899 28 96.4 33 .........................C.. CAGGATCGCGGTCGCCGCGATGTGCCCGGCGAG 61960 28 100.0 33 ............................ AGTCACGCCCCGTTTCGCCTTACGCTGGGATCT 62021 28 100.0 33 ............................ GCCTCGGTGGTCAGGGCGTCCCACCATCCCTCG 62082 28 89.3 0 ....T..................C.G.. | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 33 GCGAGCCCCACGCCCGTGGGGATGGACC # Left flank : GTTCCGGGCGGCACGAACTACGGCGACGACGTGGCCTGAGGGGGAGTGGCGTGGCGAACATGGTGGTCATCGCGACTGCGGCCGTTCCCCCTCGTGTTCGAGGCGCGCTGAGCCGCTGGATGATCGAACCCAGGGCGGGGCTCTACGTGGGAACCCTCTCGGCCCGTGTGCGTGAGGAACTGTGGGAGGTGGTCAGTGCCTCACTGGGGGAGGGGTCGGCGGTGTGCATCCATCCCACGGACACTGAACAACGATTCCTCGTCCGCACGGCCGGCCCCCAGCGCCGGGAGGTCATCGACTACGAGGGCCTTCAGCTCATCCAGATGAATCCGGAGGAGCATCGCGACATGGAGGATGAGTCCGGTGGATGGCCTGTCCCTGAGGGATGGTGAAGGACTGATGAATGCGAAGAGTAGTCGTTTGATTACATAACTCTCTGTCAAGAGGCTGGTTTTTGATAAAGAAATGGTAACGCACTAAGTCCTCGCAGGTGGGCAAGT # Right flank : CGCAGTCCCTGCGGTCTGTCCCGCCCACCAACCCGAGATGAAACGAGGGAACCCGTGCGCGCTCACCGCTTCCAGGGCTGGCTCCTTGACCTGATCAAGAACAGCGGTGACCCTGCCATCAACCAGGCCGCGACGTTCGAGACGTCCGGATACACCGAACGGCCCTACGGCATCGTCCTGCAGCTCTCCAACGGCGGTCAGGTGTACCTGCAGATCGTGCGCGGATCCTCCGGAGACGGCTCCGACAAGCTGGACGAGGAGCCCATCGTCGAGGGCGAACCTCCAGCCCCTGTAGAGGCGCACCCGATCGGTGAGGGCGGCCGGATCCGGTCAGCGGACGTGGAAGGGTACTTGGCGGCGCTCATCACCAACGCCCAGTCGCGGGAGGTCAGCGGCGTGGAGCGGTTCTCCGAGCGCACGCGGAAGGCGTACTCCGACCCGCAGCCCTACGGGGTGAAGGTTTTCTGCCACTCCAAGGCGGCGATCTCCATCTTGTTCGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGAGCCCCACGCCCGTGGGGATGGACC # Alternate repeat : GCGAGCCCCACGCCCGTGGGGATGGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 148268-147427 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAS01000033.1 Nocardiopsis baichengensis YIM 90130 Scaffold15_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 148267 37 100.0 36 ..................................... CAGGCGCTGGTGCGCACCCACCACAAGGGCACGGCG 148194 37 100.0 36 ..................................... TCCCTGGGCCAGTAGGCGATGGCCACGTGCTCGGGC 148121 37 100.0 35 ..................................... GGCTTGGACCTGCGCTACCAGGAGCCCGACCACTG 148049 37 100.0 35 ..................................... TGGAGGTCAGCCACCGCCCCAACATCGGGTTGCAG 147977 37 100.0 36 ..................................... TCGACTACCCGTCTGTCACCGAGATCCGCGCCGAGC 147904 37 100.0 36 ..................................... AGGAGGGCTCGGGCGGCTCGGGGGTCAGGGGCGAGG 147831 37 100.0 36 ..................................... CCTCCCTCAGGGCTCTTCGTCGTCGGGGGCTTGGTC 147758 37 100.0 38 ..................................... CACAGTGCGGTGACCTCCACCTGGGAGGCCATCAAGGC 147683 37 100.0 36 ..................................... TCCGCCCCGCGGATATCGACCTCGGACTCCAGGGCG 147610 37 100.0 37 ..................................... TACGCCGGCGACGTGCCGCCCGTCGTCCCGCTGTGGT 147536 37 100.0 36 ..................................... GCTGGTGCGGGCGGCCAGCAGCCCTCCTCGCCCGGT 147463 37 94.6 0 ...........T.......................G. | ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 99.5 36 GTGGCGGTCGCCGTCAGCGGCGACCGAGGATCGCAAC # Left flank : GGGCCCAGCCCCGGCGGGGGATCCAGTTCTCAGGCCATTGGTGACCGGAGTCCTCGACGTGGAGTTTGAAAGTGTGGGCCTCGGCCTTGGTGTCAAAGGGCTCGGACTGGGGGTCTCCGGTGCGAGTGCCGCCGAGTCGCCACTTCACCCAGTAACGGGTGTTTCCGCTCTTCAGGCGGCGTTGTTCGATGGTTGCCATAGGCGCACTATCGCTCGATACCTGCTGGGCTCCGAGGGAATCGGGCCAAGTACCTCGAGGTTCTTGTGGCCGCCGGCGTCCGTGCCCGTGCATGTGGGAGATTGCGGGGTTTGTGTGGGTGGTGCGGGTTATCCTTCAACTGGCATTTGTGGGCGAGGGCGGCCTGTGGCTTAGGAACCTCCGGTGCCCATGGGATCCCGGGAAGGTTCTCAAGGGGGTATGGGTGGCTTTGGTGCTCGGTGGTAGTTTCCGGGGCCTGGTCAGTGCTCCGGTGCTGGGCCGTTCTGCCTGTTCAAGCGCT # Right flank : TCGATGGGAGTGCACGGTGACCTCTTCGCTCAGGGGGCGGTCGCTCTCACGGGGGTGCCTGCGGATTACGGGTCGCTCGCGCTATGCGCTGGGTGGGGGAGCGGCTTCAGGTGCTCGGGCGCCGGCTTCCTTCCGTGCGCCCTCGTGCACCCCCGCTGAGGGGGTGAATGACGGGATGGAGTCTGCACAGCGGGCGGGTGCGACGAGGCGGTGCACCCCCGCGTGCACCCTCGGCAGCAGGAAAGCCCTGCCTGTTCGATGTGTCATCGCAGGTCAGGGCTTTCTTTCGAATGGAGCGGATGACGGGAATCGAACCCGCGTTATCAGCTTGGGAAGTCGACAAGGCTCTGAGTGGCCGACCTGGCGCCCCTCACACCTGCGGCAACGCGGGCTGTTGGCTGCTGGTTCCCCGTGAGTCCCCGTTGTGCGCCGTCGTGTGTGGCACGAGTGTGGCACAGGGCGGACGGTGGCACCTGCGGATTCTTCGCCCCTCGTGGCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCGTCAGCGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.00,-16.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 111636-112397 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAS01000038.1 Nocardiopsis baichengensis YIM 90130 Scaffold19_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 111636 37 75.7 35 .AC.....A.A..T.......GT.AA........... GAGACGTTGTACAGCAAGGGCATTGTCTCGAGGTG 111708 37 97.3 35 ...T................................. GCGGCGGCTGAGGAGATGACGGTGTGGTGCATGGA 111780 37 100.0 36 ..................................... CTCCCAGTCGCGGATGTCGGCCCCGTAGGCCTCAAG 111853 37 100.0 36 ..................................... CTCCCAGTCGCGGATGTCGGCCCCGTAGGCCTCAAG 111926 37 100.0 35 ..................................... GCCGAGCGCGCCCGCCAGGAGCGTCACCGCCGCGA 111998 37 100.0 35 ..................................... ACGTCCCGGGCAGCGTTGACCGTCGTGGTCAGCTC 112070 37 100.0 35 ..................................... CGCGCGGTCCACACCACCTCGCAGTCCCCCACCTC 112142 37 100.0 37 ..................................... ACGGGATGGGGGCGGTGTTGGCGATCTCGTCCAACTC 112216 37 100.0 36 ..................................... GAGCGCGTAGTTGGGGGCGGCCTCCAGGCTGGCCAA 112289 37 100.0 35 ..................................... ACCCTAGACGATCTCGCGTCCGCCCAGAATCCGCA 112361 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 97.5 36 CCTGCAACGTGGACGGCCCGCTCGGGGCCGTGGACAC # Left flank : GCCTGGCCTCCCTGGCGGCGAACGTGGCGGTCGCCGAGCCGACGGCATGGTCGGCCGTGATCCACGCCTGGCCGTCCTTCGCCCTGGCGGGTGCGTTCGAACTGCTGATGCGAGAACTACGGCGTGAGCAGGGCGCAAGCACCGAGAACGCAGCCGCTGAGCCCGACAGCTCCGCGGCCCCGATCACTCCGGTACCGGAAACCCACAAGCCGCCGACCACCGTCGTCCAGGACGACCGCGCAGAACAGGGCAACGACGACCGCCCCCGCCTGCACGTTGTCGAAGCCGTGGACCACGCCACCGAGCAGACCTGCGCCTCTGCCGTTCCCCATCTCCAGGTGGAGGCATGGCAGTGGGCTCAGGAGAACCGAAGGGAGGACGGTTCCTTCCCGACAGGCAGGGAGATCGCGTTCCACTTCAACCGCAAGGAACGCTGGGGCCGACTGATCAAGCAGTGGGGCCAGGAGGGGCGTTTCGAAGGCGCTGCTGCATGAGCAGGT # Right flank : CGGCAGTTGAACAGGGAAAATGCCGGTGTAGATGCTTTCGGACTTCCTTTCGAGGGATGCTTTGTTCCTCTATGGGGGTTTTCGTGCTTGGGAACCTCCCGGGGATGCCATGAGTGCTTGAGGTTCCCAACTCGCCCCTCTCGGTCCGGTGTGTTGCTCGGGCAGTGTGACTTCGCAGGCCCCAAGATTTTGAGGGGTGCTGTACTTGAGTGGCTACGTTCAAATGGACTCGCCGAGCCGTATTCGCTCGGTGCCGGCCTCATTCCAGTAGCTCATCCACGATTCGCCCCCAACTCGGCCGAGGGGCGGTGGCCTGGTGCACGACGGTGAGCAGTCGGCCCGTGAGGAACGCATCAAGCCCTTCGCTCATCCTCAATGCCCGGCGGCTAGATCGAGCGCGCTGGTCATTCGGAACGCGTTCTGCCAGGACACCGAGCAGAACCTCGTGGCGTGCCTGGCCAACCGCATCGCCACGGATCCACCGGCCGCGGACCGGAACG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGCAACGTGGACGGCCCGCTCGGGGCCGTGGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.30,-13.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 2 114543-114203 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAS01000038.1 Nocardiopsis baichengensis YIM 90130 Scaffold19_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 114542 37 100.0 37 ..................................... CCCGGCACCGACGGCATCAGCGAGCCGGCGGGCCCCT 114468 37 100.0 35 ..................................... CTGCGCGGCGACATGACCATCCGCCGGCTGCACGT 114396 37 100.0 44 ..................................... CAGTTCGCCTCGGCCGCCGGGGGGCTGGTGGCGGTCGCCGAAGG 114315 37 100.0 39 ..................................... ACCAGGGACCGCCGCACGATGACGGGCTCGGCGGGCGGG 114239 36 94.6 0 ..............C-..................... | C [114206] ========== ====== ====== ====== ===================================== ============================================ ================== 5 37 98.9 39 GTGTCCACGGCCCCGAGCGGGCCGTCCACGTTGAAGG # Left flank : GAAGGTCGGCGGGAAGACCTTGTCGGCGCCGGCCGGGATGTACTCCGTCGTCGCCTCGATGCCGGCGAAGGGGCGATCGGACCCCACAGCCTGCAGCAGACGCTCGGACAACTGCTCCATGTGCCGTCCTCTCCTAGCCAGACCTGCATTCGACGATGAAGCTTGGGCAGAGCTTAGGACTGGCCTGTGACAGCACGGATCAAGACGACTACGCGCTCAAGTCCGGGGGAGTACTCGGGCCAGCTCACCACGGGGCGCTCGAAGGCCCCGGAACCCGCCCCGCGACCGGCCTACACTCATAACGCCCCTCAAATTGTGGGGCGGCAACGTCGCACCGCCTGAGCACCGCACAAGACAGGGAGGGGGACAGGTTGGGAACCCCAAGCGCCCATAGAATCCCCGGGAGGTTCCCCAGCTCGAAATCCCCCATAGAGGAACAACGCACCCTTCAGAGGGAAGCTCGACAGCATCTACAGCGGCATTTCGCCTGTTCAATTGCC # Right flank : CGACTGACACGGCTGGGCGGATCGTCCAGCGGGTCTGTCCACGGCTCCGCGCACACCGCCTTCACCGGAGATCCCCACAATTGGAGACCCGCGACCGCCCGCCATGGCCACTCGTGTGGGGCACCCATGCAATAGCGCGTCCGAAGCGGCCCTGCTGGCCCCACTGCTTGATCAGGCGTCCCCAACGTGCCTTGCGGTTGAAACGGAGCGCGATCTCCCTGCCGGGGGCAATGAGCCGTCTTCGGAGCGGACAGACAGGTGCGCGTGTACATCGTTGGCGGCATCAACGCCTCCGCGTCCGGGGCATATGTCAGGAGACGTCTGCTGGCGTTCGTGCTGTCGGAGAGTCGTCATAGGCTTCCGCCATGAGTTCGGTACACGCTCGGGTATGGCGCTTCACGGTTGAGAGGGGAATCGCCGGGGCGGAGGCTGTCCAGGCTGTCGAGGTCGGGCAGGGCACGCTGCCGGTGTCCGTGGCCGCGGTGGTCAATTTCAACGCA # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCACGGCCCCGAGCGGGCCGTCCACGTTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.30,-13.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 45031-45853 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAS01000039.1 Nocardiopsis baichengensis YIM 90130 Scaffold20_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45031 29 96.6 32 ..A.......................... GACATCTACCGCGGCTTCGCCTTCGCCCCGGG 45092 29 96.6 32 ..A.......................... GGGCGACCGCTCGGGTTTGGCGACTGTGGGCG 45153 29 96.6 32 ..A.......................... CTGAGCGTGTACCGGTCGGCGGGGATCACGAT 45214 29 96.6 32 ..A.......................... CTGCGGACGAACTTCTGCGCGTTCGGCGCGAG 45275 29 96.6 32 ..A.......................... GCGAACTGCGCATCGAGCAGCAGTACGTCGAG 45336 29 100.0 32 ............................. TGGGACGGCGACGACGCCCGCCGAGAAGGCCG 45397 29 100.0 32 ............................. GGGTCGTCAAGATCTCCGGCGACTTCGTGGGC 45458 29 100.0 32 ............................. CTCCTCCCAGCGCACGTCGCGGCACAGCGGGA 45519 29 96.6 32 .......T..................... TCGGCCCACCCGGCCAGGCGCCCCAGCACCGC 45580 29 100.0 32 ............................. GCAGGCGCGCCTGCCCCCGTCCGGGCCTGCAG 45641 29 100.0 32 ............................. GTCCTGGAGACCCCCACCACCCGCCCCGCCCA 45702 29 100.0 32 ............................. GGAACCCGCCCCATGTGTGCGCCCCCTCGACC 45763 29 100.0 33 ............................. GAGAACCCCCCGTGGCCGACGACAAGAACACCC 45825 29 96.6 0 ....T........................ | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.3 32 GCGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GCTGGAGTACACCGGCCTGCGCCCGCTGGTCGACCTCGACCTGCGCCTGGGCGAGGGGTCCGGGGCGCTGCTGGCCCTGCCCCTGCTCCAGGCCTCCGCGCGGGCCCTCCGAGACGTGGCGACCTTCGAGGACGCCGGCGTCACCGAGCGCTGAGGCACCGCCCCACGACTGCCGGACCAGCCCTGCCGGGGCCGCACGAGCGGCCCCGGCAGGCGTCGTAAACGGCCTCCGGCCGTCCCGCCCGCGCGGCCCGGAACGTGGCCGGGCAGGAGCACATGCACGCCGACACCGTCACCGACTCCATGCGGCCGGATTCATCTGGATGGATTCGGAAGAGCGCCGAGGCATGGAGGATGATTCCGGTGAGTGGCCTGTTCCCGAGGGACGGTGAAGGAGTAGCGAATGCGGAAGGTAGTCGGTTGACCACGCAAACCCCTGCTGAGGGGGCGGTTTTCGATAAAGAAATGGTAACGCCCTGAGTCCTCGCAGGTGAGCAAGT # Right flank : GCGGGTCGTGTGCCTGTGGCTGGGATGTCATCGTCCCTGGTCCTGAGGGGTGGGCGAGGGGATAGCGGGGGCTCCGTGCGGTCGGCGGCGTGTTCCGGAGCCTCGTTCCTGCTCGCCGGTGTGATGTCCCCCCGCGAGGAAGGAGTGTCCCGAGAGGTGTATATACAGTGAGGCAGGGCATGGGACGCGTCGAATCGGTCGGAAACGTGAACCCGGAACCGGTTTGGCACGGTATTTTCGGGACACTGACGCAGGGCGTCCTCCGGTGAGCGTCTCCTCGGCCGCCACCGCCGGTGCGCCGTGCGCCCGACCGGCGCGGCAGGCGCCCGCCCGCCGCGGTCCCGCGACGACGGATCTGGAGGGCTTCCTCGGTGACGTATCTGCTCGGTTTGCGCATGGAAGGGCGGACGGCGCTCGTCGTCGGCGGCGGGCGTGTCGCCCAGCGCCGCGTGCCGGTGCTCCTGGAGGCCGGCGCCGAGGTGGTGCTCGTCGCCCCTGAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : GCAAGCCCCACGCACGTGGGGATGGACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 89336-90099 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAS01000036.1 Nocardiopsis baichengensis YIM 90130 Scaffold17_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 89336 37 100.0 37 ..................................... AGGCCGGGGCGCGCTCGCCGTGCAGGCGCACCAGCTG 89410 37 100.0 35 ..................................... CCTCCGGCGTCGTCTTGGTGGTCTTGCGGCTGGTG 89482 37 100.0 36 ..................................... CGCCAGGACGCCACCGCCCACGTGGACGGCGTCGGA 89555 37 100.0 35 ..................................... GCCGGATTACCGGCCATAGCTGACACCTCCGAAAA 89627 37 100.0 35 ..................................... ACGCCAAGCGCCGACCGGATCCGAGCGAGACGGGG 89699 37 100.0 35 ..................................... TCCGCGCGGCGGCGGGCGGTGCCGGTGCCGGGGAG 89771 37 100.0 34 ..................................... TTCATGGGGCCGTCAGGCGGCCAGGTCGTAGGCG 89842 37 100.0 38 ..................................... GGGTACCGGCACCGGCCTGGTTGGCAGGAAGGATGGGC 89917 37 100.0 36 ..................................... CCCGCAGTGGCGGTGGTACAGCCCGGACACGGTGCA 89990 37 97.3 36 ...................................C. AAAATCGCACTGCCCAGTAGCGTGGTGTTGAACGAC 90063 37 81.1 0 A...........C.TGAT......T............ | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 98.0 36 GTGGCGGTCGCCGTCAGCGGCGGCCGAGGATCGCAAC # Left flank : TTCGGGCGCCGGCTCCCCGCATTCACCTCCGACAGCAGAAAAGCCCTGCCTGTTCGATGTGTCATTGCAGGTCAGGGCTTTCTTGCGAATGGAGCGGATGACGGGAATCGAATGCCCCAGGGTCAGGGCTCTGACCTGCATGAATTCGAGAATGTGCAGGCGAAGGGGGAGGCGTCGTCCAGGGTGTGCCGGGTTGCTCCGGGATGCTTTCCCAGTGGTGCACCCTCAGGGTGGACCACCTGTGCGGGGTCGGTGCACCCGCGAGGGTGGACGGCGGGCTGGGCCTGCCTTTTCAGTCGTCGCCGGGGTTCGTGTGGGTGGTGTGGGCTATCCTTCGGCTGGCGTTCGCGGGTGGGCGGTGTCTGTCGCTTGGGAACCCTCGGTGCCCATGGAATCCCGGGGAGGTTCTCAAAAGGGTATGGGTGGTTTTGGTGTCTGGTGGCAGGTTCCAGGTGCCGGTCAGCGCTCCGTTCCCGGGCCGTCCTACCTGTTCAGACGCC # Right flank : CTTGTTGGCTGGACTTCATGAGGTGAAGATCCACTGCTTGTGGTGAGCGCCGGGCCGCCCTGTGGCGGCCCGGCCTCGCCAGGCGTTTGCGGTTCGATAGGGGGTACGCGGCATTTCGGCTGCTTGTGAGTGATTTTTATAGAAACCCCGGCGGGTGTCGGTGGGGTGGGCTAGCGTTCCGAGCATTCCAGTCAGACGGCTTTTCTTCGGGACGGTTGCATGGGGATCTGGGGCCACAGTGCCAACGACGCCGGTGAGCGTCACACCCTTGCTGATCATCTTCGCGGGACCGAGGAGCGGGCCCGGCGCTACGGTGCCCGGTTCCATGCAGGTGAACTCGCCGGGTACCTCGGGCGGGTCCACGACGTCGGCAAGGGGAGCTGCGCCTGGCAGAACGGGCTCCTGCGGGCCGAGGCCTCGGGCGGGCGCGTGGGGATCCCGCACAAGCACGCCGGCACCCACCTCGCCTTCAAGGCCGGACTCGGGCCCCTCGCGAACGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCGTCAGCGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 97972-99756 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAS01000036.1 Nocardiopsis baichengensis YIM 90130 Scaffold17_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 97972 37 100.0 35 ..................................... TCGGCGGATGCCTACTACCGCCGCCAGGCATCCGC 98044 37 100.0 35 ..................................... GAGAACCCGATCTCGCTCCGGTCGGCGGGGTAGTA 98116 37 100.0 35 ..................................... TCACGGAGATCCGATGATCGGATCTAACCCCAGTG 98188 37 100.0 35 ..................................... ATCTCCTTGGCGGTGCGCACCTGCTCCTGCAGGGC 98260 37 100.0 38 ..................................... TCTCAGCCCGATGTGCTGGATGTGTTCCGGGCGGAGAG 98335 37 100.0 38 ..................................... TCTCAGCCCGATGTGCTGGATGTGTTCCGGGCGGAGTG 98410 37 100.0 34 ..................................... CAGCGTCTGTGCGAGGCCCTGGCGGCCGTGGACC 98481 37 100.0 37 ..................................... GCGCGGACCTGGGCCAGCCGGGCCAGGTCGCCATCGA 98555 37 100.0 38 ..................................... TCTCAGCCCGATGTGCGGGATGCGTTCCGGGCGGAGTG 98630 37 100.0 34 ..................................... CAGCGTCTGTGCGAGGCCCTGGCGGCCGTGGACC 98701 37 100.0 37 ..................................... GCGCGGACCTGGGCCAGCCGGGCCAGGTCGCCATCGA 98775 37 100.0 36 ..................................... ACCGTGATCGGGTAGATGGGGTAAAACGCCCTGCTC 98848 37 100.0 37 ..................................... AGCTACGGCCGGGCCGGGTTCGGGTCGCTGGAGAAGT 98922 37 100.0 35 ..................................... CCCTCCCTCACGAACGGCGGGGGCGGGCGCCCCGG 98994 37 100.0 35 ..................................... TCGATGGACGACCAGGACACCTTCGGGCCCGTGGT 99066 37 100.0 36 ..................................... CCCTCCCGCGTCCGGCTGAGGGGGCCGGGCGCCATC 99139 37 100.0 35 ..................................... ACCCTGCCCACCCACATCGGCGCCGAACGCACCAG 99211 37 100.0 35 ..................................... AGGTCGGTGGTGGCCACTACACGGCCTGTCTGGGC 99283 37 100.0 35 ..................................... TAGGTCGCGGTGGTCTGGTGGTGGCGGGCCCCGGG 99355 37 100.0 35 ..................................... CAGGTGAGGTAGCCCCGATGGGTCAGGTCCGGGTC 99427 37 100.0 37 ..................................... AGGTACACCTGCACCGACCGCGTCGTCTGCTCACGGT 99501 37 100.0 35 ..................................... GCTCCGGGGCGGGTTGCGCGCGAGCGCTCCCCGGG 99573 37 100.0 37 ..................................... GACGTCAACGAGCTGTACCACCTGCAGCAGGAGCCCG 99647 37 97.3 36 ............G........................ CCTGGGAGGTCGAGCAGCGCCCCGCCCATGACGACG 99720 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 25 37 99.9 36 GTGGCGGTCGCCCTCAGCGGCGGCCGAGGATCGCAAC # Left flank : ATGCCTTCGGTGCAGGCCCGCCTGATGGCGCGCCACCTGCGCGACGAGCTGCCGGGCTATGTTCCTTGGACGGTGTGAATGGAACTGCTCATCACCTACGACGTGGCCACCACGACCCCGGAGGGCGCCCAACGCCTGCGCCGGGTGGCCAAGCTGTGCGAGGGGTTCGGGATGCGGGTGCAGAAGTCGGTCTTCGAGGTCGTGTGCGGCGAGGCGGACCTGGTGCGGTTGAACGACCAGCTGGCGCGTATCATCGACGAGGAAGAGGACAGCATCCGGGTGTACCGGATGAACCGCGGGTCGTTCAAGGCGGTGGCGACGATGGGGAGGGCTCGTGCGCTGCCGCATGATGATGCGCTGGTGCTGTAGTTGGGAACCTCCGGTGCCCATGGAATCCCGGGGAGGTTCTCAATGAGGTTTGCGCCTTTTCGTGGAGGAGAGTCCGGTTCGCGCGTCGGTTTTACCGTCGCGGACCGGGGTGTTTCCCCATTTCAGGCGCC # Right flank : CGATGAACTCGGGGCGGGCGAGCGTGGGCTCCAGCGATGGCGGTTGCTGCCACACGGGGCGCCCCGGTCGGCGGGGCTTACTCCCGCGGACGACGACGTGCTTCCCCGCCCAGGGAAGGAGCAGTTCGGTCGAAGGGCCACAGGGCAGGGCGCGAGCGCAGTGACTTCAGGTCTGCAATGCGAGATTCTCGAGGTACTTTGCTGCCCTGTATTGAAGGTTCTCGTCGAGGTGAGGGTCCATCGGTGGTGATCGCGCCGCGTGCGGCGGCGCCGGGCCATGGGAGGGGCGTCCATGCCGACCACCACCGCTACCGAGACCGTTCGGGGCACCGCCGGGCCGCTGGGGCTGGTGCGGCCCCGCCCGCGCGGGGCGACCGGGCCCGCGCGGGCGTTTGGCGGCCGCCAACGCGCGACTGGCGCCCCTGCAGGGGTTCCCGCGCCCCGGGCGGGCCATCGGCCCCTGGATCGGTGTCAGGGCGATGCTGCGGGGGCCGCGCAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCAGCGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 117574-117826 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAS01000036.1 Nocardiopsis baichengensis YIM 90130 Scaffold17_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 117574 37 100.0 36 ..................................... GTCAACACGGAAGATGTCGGCAACCTCAGCCGGCGT 117647 37 100.0 35 ..................................... GGACGTCGTCGCGGTGCTTGCGGGCTGGACGGCGT 117719 37 97.3 34 ................G.................... AAGATGAGCGCGATGAACGCGACACCGATCACGG 117790 37 83.8 0 .............................GGC.ATC. | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 95.3 35 GGTCCGAAGGACGTCAAAGCCCGAAGGGCATAAGAAC # Left flank : GGCGGGTCGGTGAGCGCCGCGCGTCCCCGCTGTGGCTGCGCCCCGTGGCCGATCAGGGCGGCCAGTGGCACCTGTTCTCCTTCGCCTTCCACGACCGCTTCCTGCCCGGTAACCCCCCGCTCGTTGAGACCTATAAGCGTCGCGGGCCGGTCGAGATCAGAGATTGCGACGTGGTGGAGCTGAGCCGACGATGGGTGGAGGGCATGAAAGGCGAGGCCGATCCGCAGTGGCAGTAGTCCGCGCGCCCGGGACGAGGGCGGGCCAGGGGCCGGTGGGCCTGCTGTCTTCAGGGGAGGGCGGCACCGGGCCGCAGCGCGGGCGTGTACAGGGGCACCCGCCGGGGCGCTGGAACGGGAGTTCGCGTGCAGCGCGTTTTCGCTGGTCTAGACACCGCGCTGGCAGCTTGTGGTGCGCGTCACGCGGGTTCGAGTGGGTGGTCGGGAGGTCGCGTGCAATCGGACATCGTCAGTGCAGGTCAGGTGCCGTAGAATCCGGCAAGA # Right flank : CTCAAATGTAGAAGAACTTCAAACTGGGAGTTCCAATGGGAACCCTGCTCCACCGAGTTGCTTCCGAGGAGTCGCTGTCCGCCGCCTGGCATGAAGTGCGCGAAAACGACCTCGACGACGGTGTGAAGAGCACTGCCGTCCAGGAATTCGAGAAGGGCGCCCTACGGCGCCTCCTTGACATCAGCGAGCAGCTGCGCGAGGGGACCTACGCCCCCGAGCCCGTGACCGCCTTCGAAGTTCCCAAACCCTCCGGCGAGGCGCGGCTGCTTGGCATCGGGACGGTCGGCGACCGTGTCGTGGAGCGTGCCGTGCTCGCGGTGATCGAACCCTGCATCGACCCGGTCCTGCTCCCGTGGAGCTTTGCCTACCGCAAGGGACTGGGTGTTCCCGACGCGGTGCAGGCACTGGCCGAGGCCCGTGAGAGCGGCAGTACGTGGGTGCTGCGCGCCGACTTCGCCGACTGCTTCGAGACCATCCCCCGGTGGCCGGTCATCACCCGC # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCGAAGGACGTCAAAGCCCGAAGGGCATAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 120244-120564 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAS01000036.1 Nocardiopsis baichengensis YIM 90130 Scaffold17_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 120244 37 100.0 33 ..................................... TATCACGCAGTACAGCAGCCGCAGAAGATCAGC 120314 37 100.0 34 ..................................... CCGACAGGACGACGGAGCGGCGTGCCGTCAGCTT 120385 37 97.3 35 ............................A........ CCGATGAACACGATACGTCGGTAGCGGTTCGCCAC 120457 37 100.0 34 ..................................... ATCCGGTTGGCGTAGCGCAACTTCTTCTTGACGC 120528 37 75.7 0 ......A....T..............A.TGG.G..TG | ========== ====== ====== ====== ===================================== =================================== ================== 5 37 94.6 34 GGTCCGCAGGACGTCAAAGCCCGAAGGGCATAAGAAC # Left flank : GTGAGGCGGGGATGGGGACGCACCCGCACCGGCGCCGCTTCTACCTGGTCTGCTACGACATCGCTGATGACGACCGCCGTGAAGAGGTCTCCGACCTGCTGTCGGGCTATGGTCCGCGCGTGCAGTACAGCGTGTTCGAGGCCGCGGTGACCGGGCCGGAGGCCTACGACGAACTCACCCGGTGCCTGCGCGGGCTGATCGAGCAGGACGAGGACCAGGTCCGCATCTACCCGCTGCGGGTCCCCGACCTGGACAAGGTCACCGTTCTGGGCAACAGGCGGCTGGAGGAGCGCGATGACTTCTGGATCCTGTGAGCGGGTGTGTACAGCCATGCCCGGGGACCGGTCGAAGAGCATGATCGCGTGCACGGCGTCGTCGTAGCTCAAGAAGCCGAAACACTGCAATATGGTGTGCGTCACCATGGTTGTCGGTGTCGGGCAGGTGGTGCCGTGCAATCGGACATCGTCAGCGCAGGTCAGATGCCGTAGAATCCGGCAAGA # Right flank : GTTTGGGGCGGGGAACGCGCTGTGAGGCGATGAGGCCGCCCTGGATGTCGTCGGGCGGCCTGCTGAATTTCTTCGCGGCGTAGCTGATTAGTGATCTCCCGCTTACGCTACGGAATCCACCTGGTGGAAGCCGATGCGCACCCCGTCCGAGGTGGCGCGCAGGTCGGTGGTGTCGCCGTCCACTTCGGCCAGGTCGAAGAAGGAGGCGCCGAAACCGTCCACGGTCCCGGTCACGGTGTTCCCGGTGTCCAGGGTGAGGGTGATGGTGTGGCCGTTTGCGGCGGTGATGGTGTCGTGGCTTCGCCGATGGTCATCTGGGCCTCCTGGCTTTCGCTGTTGCGGCAGCCAGGAGCTTGCCTCACCCCGGCGTGCTGAGCGACTCCGGAAAGAGATCTTTGAGCAGGAGAAACATGCTCTCTCCGGACTGGCATTGAGACCCCAAGGGCCCGGGAGCCGAGGTGTCTCGCCGGCCGGGCCAGGGCGGCGGGGAAGGCCGGCGA # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCGCAGGACGTCAAAGCCCGAAGGGCATAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 6408-6802 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAS01000008.1 Nocardiopsis baichengensis YIM 90130 Scaffold3_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 6408 30 96.7 31 .............................A TGACCGTGCTGGTGCGCCGCGCCGAGGTGCG 6469 30 96.7 31 .............................A CCCCCATCGCCACCGAGCTGGAGTACTCCGA 6530 30 96.7 31 .............................G ACAGCCCCTTGGCGTAGTAGTCGAAGGTCAG 6591 30 100.0 31 .............................. CCACGTGCAGCACCGTGTGCAGCAACTGCAG 6652 30 96.7 31 .............................T ACGACGGCCCCGAGCAGGAGCGGAACCTGGC 6713 30 100.0 31 .............................. GGACGGCGGCGCGCACCCCAGCTGGCGTGAC 6774 29 80.0 0 ..............T.......-C.A..GG | ========== ====== ====== ====== ============================== =============================== ================== 7 30 95.3 31 ATGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : CGGCGGACCTGGGGTGCACGACGAAAGCGAGCGCGAGATGAGTTCTGAGGACCTGGAGAAGTACGAGGCCGAGATGGAGCTGCAGCTCTATCGGGAGTACCGCGACGTCGTCGGCCTGTTCTCGTACGTGGTCGAGACCGAGCGGCGGTTCTACCTGACGAACCACGTCGATCTGCAGCCGCGCAGCACCGAGAACGGCGAGATGTACTTCGAGGTCTCCATGGAGGATGCCTGGGTCTGGGACATGTACCGCCCAGCGAGGTTCGTCCGCAACGTGCGCGTGGTGACGTTCAAGGACGTGAACGTCGAGGAGATCACCAAGTCCGATCTGGAGGTCCCGTCAGGCCGCCCCGGCCAGGATTAGACGGGCCCTCACATGAGGCACCCACGGAGGGCGGGACCGGAACCACCGGTCCCGCCCTCCGTCCGTCGTAGGGGGAGTGGGTGCCGAGTGGTTGAAAACAAGCGGTTGCTCACAATGAAGCCCCAGGTCAACGGGT # Right flank : GGACCACATCCTCTGGAGCGGTGGCGTTTCCAGCTCGGCCCACTGGGCGTGCGGCTCCTCCGCCGGTCATCGATAGTGGTGAAACCACCACTACCGATTGCCGTGTCCACGTGGAGCCGCGGCCCACGCCCAGGGCGGCATGGACACCGCCCCCTTGCCCTACTGGCTCCGGCCGCCCGGCGCAAGGCGGTCACGTTCCCGGCGGCGACACCACTCCGGCGGGCGTGACCGTGAGCCGTGGACCCGCTTATCCACAAGCAGGGTGATCGATCCGCCAGGGGGACCCCTCCGCCTTCACCGTTGGGGGTGGAGGTGAGGGCCCATGGGATCGGCGAGGGCCGGAGCAGGGTGGACCAAGGCGGCGCTCGGGCGGTACGGGGAGGATCTGGCCGCCGCGCATCTGGAGCGGACCGGGTTGCGCATCCTCGCGCGCAACTGGCGGTGTCCCGAGGGCGAGATCGACATCCTCGCCCGGTGGGGCGGCACGCTCATCGTCGTGG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //