Array 1 1960454-1960654 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059408.1 Bacteroides sp. CACC 737 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1960454 47 95.7 30 ........C.......................C.............. GATAGGAATATACGTGAAATTGAAACAATA 1960531 47 100.0 30 ............................................... TTTCGACAGATAAGCAAACGGTTGAGAATC 1960608 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 3 47 98.6 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCTGTATGGCAGGGCCTGCTTTCCATATTTCATCCAGAAACACGACGTCGGCTGTGGGCAGATAGCCGTCGATGGCACGTTCGTACTTATCGGATTCTTTCAGCCGGCTGATGCTGACGGGACCGAATATCTCGTCGGGTGTAGAGAATCGGGACATCAAGTATTCGAAGGCACGGGCATCTATAAAAGCAGACTTTAGCCGCCTGGCTACCATTGACTTGGCTACTCCCGGAGGCCCCAGGAGCAGGATGCTCTCACCTGCCAGGGCTGCCAGCAGGGAGAGGTTTATTTCGGTTTCTTTTTCGTATACTCCCCGGTTCATTTCGGAAAGGAGGAGGCGGATGCGTTGGATCATTTCCACAATATGATTTATTTATAGTCAGTACTCATGTATAAAGAAAATTGTGTAAAGATACCAAATAGTAGCGAAATCAGAGAGATTCTTATTAAGATTCACTATTTTTGGAAAACAAATACACACACAGACACGCACACACAC # Right flank : CGTTTAACATTTTGTTTTTATTCTCGTTTTGTTGTGATTTGCTTTCATTTTAGTATATTTGTTGTAATAAAGTATTTTCCCTTTGAATATCAACAGATTGAATAAAACTCGCACGAGAACGGGCAACGGATAAGAAAAAGCTGGACTGTGTAGAACTGCCATATTTCTCATGCTTTCAAATAACTCTTTAATTCGATTACAAAGATAACATTTCTATTTTAAAGGACATAATAAATGACTTCAATCTTATCGGATAAGATTGAAAAAAATAAATATTCAGTAGCCGAGTCCCCATAACCACAGGCAAAGGTAACTCGTGTTCTACTCGTCCAAGCAAGGCCAAGCCCTTCGGGTTCGTGGAAAAAATCATCCTCGCCCGAAGGGCTTGCGGTATTTTTTCCCGAAGCCTTGCATGTACGGAACACGACCTTTTAAAGCCTGTAGTTATGGGAACTCCGGCCCCGAAATGCCGGACTAACAAATATTGATTGTTATGTTAC # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 2024781-2026746 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059408.1 Bacteroides sp. CACC 737 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2024781 47 100.0 29 ............................................... AAATTACCGTTCACCTATGAGGAGTTTTT 2024857 47 100.0 29 ............................................... ACCTGTCCTCCTACAATCCATAGAAAGAA 2024933 47 100.0 30 ............................................... TAAATGCAAATTTGAAATAGTAGAACCTTA 2025010 47 100.0 29 ............................................... ATTAAGAGATGATAAGTCAAACAAGTAAA 2025086 47 100.0 30 ............................................... TCTGTATACATCATAGCATTACACTCGGTT 2025163 47 100.0 30 ............................................... ATTTTACAAAAAATAACAAATCAAAAATTA 2025240 47 100.0 30 ............................................... GTCACATATATTTAGACCTCGGCGGGTCAA 2025317 47 100.0 30 ............................................... TATCTGATTGACGAAGGCCAACGGTTGGGC 2025394 47 100.0 30 ............................................... CACGAGAAGCCAAGTCCTTAGTATGAAGAA 2025471 47 100.0 29 ............................................... AAAAAATAATATATATCTTTGCCTTGTCT 2025547 47 100.0 29 ............................................... AGATCTTAGATTTAGTTTCACTTTTCATT 2025623 47 100.0 29 ............................................... TTCTTCCGTGTTCGCATATTTACTGGGTA 2025699 47 100.0 30 ............................................... GTTTCTTTTGTAAAAGTGTAATCAAGTTCT 2025776 47 100.0 30 ............................................... CAATTATCTGAACATCAGAAGAGAAAAGTT 2025853 47 100.0 30 ............................................... AAATACTACTTCTGCATATTATGAGCATCG 2025930 47 100.0 30 ............................................... AGAAGCATCGGTAACCATAGGCCAAGGAAC 2026007 47 100.0 30 ............................................... CTCAGTTTGGTAAGGTGAACATCAAAGCGG 2026084 47 100.0 30 ............................................... AGATGCAGTTGTGGTTGACAGCGAGAGCAG 2026161 47 100.0 30 ............................................... TCTAGTCGAACAAAAGCTAGAGACTCTCGA 2026238 47 100.0 30 ............................................... AGAATGTTTTTGCATGACAATGATCAACGG 2026315 47 100.0 30 ............................................... CTCTTTCGTTTTCTTGCATAACAGCCAACA 2026392 47 100.0 30 ............................................... ATAAGATTTTATAATCCATCAAACGGCATG 2026469 47 100.0 30 ............................................... AATCGTATAATCAAGCAAAGGAACAGCATG 2026546 47 100.0 30 ............................................... CGTTCGCGATTATACTTAGAAGCTTCAAGT 2026623 47 100.0 30 ............................................... CGTTTGTTTTGGTAGGTTTGCATGGGATAG 2026700 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 26 47 100.0 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Left flank : GCCTCGCTCTTTTTCAGGTAGAACGATACCTTTACATTTGCTTGATTCATAACTAATTCCTTTGTTTGCAAAATTATTATATAGCGAGCAAATGAATGGCATGAAAAATATAGCGGAACGGAGAATAAGGTCCTTCGCCTAACAAACAAACCCTGTCTTTTTTTCTAATACGGAAAAATATGACTAAGTTTGCATGATAGACATAGCAAGAAACATCGTTCCATGCAGTGATAAACAGGATATGAAAAGTAGAAATGGAAGCTATTTCCAACCCTCTTTTTCAACCCGGAAAAGGCAACGGATAAGTAGCGATTTGTTTTCCGAACTCCCTCAAAAACGGTCAAAAACCACAAATGGAAGAATCTGGAACAAAGCTACATATTCCTTTAGTTCTCAAATACTTTGTACTATTTCCTCAAAAGTTATCCGTATGTGGGCGAGTTTCGCTATCTTTGAACCATTGGAAACAGCAAATTACCGTTCACCTATGAGGAGTTTTT # Right flank : CTGATTACAAGTAACAATCTAATATTCAAACGATTACACATAGTATTAGAATATAAAAAAAGAATGCTGCTTCTGAAAAAATCCCGCCATTGCGCGGGATTTTTTTAGAATAATTCTAATTGTTGTCCAGGCGTATTCACATCCACAGTCTTTTTCCCATAAAAAAGTGCTATATTTCCAAATTGCTTGTCCGTAATGCACATAATTCCGACACTTCCATAGTCCGGTAAGAAAGATTTAACTCTTTTTATATGTACCTCCGCATTCTCACAACTCGCACAATGACGGACATATATAGAGAACTGGAACATCGTAAATCCATCCTTTTGCAGATTTTTTCTAAATTCCGCATACGCCTTTTTATCCTTCTTGGTTTCGGTAGGCAAATCAAACAACACTAATACCCACATAATGCGATATTCACTAAACCGGTCCATCACATCTCTGGATAGGATATTTTACGCAACTCACCACTGAAACATTTATACAGAGAAGCCGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //