Array 1 1553786-1553333 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACYE020000001.1 Nocardia farcinica strain 3012STDY6733949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1553785 28 100.0 33 ............................ CAGCGCGGGGGCGTCCTCGGCATCCTCGGCGCC 1553724 28 100.0 33 ............................ CCCGCGCACCTGCGAGAGGTAGGTGTTCGGGCT 1553663 28 100.0 33 ............................ CAACCCGCACTTGGCCTACCCCGAAGTCGAACC 1553602 28 100.0 33 ............................ CGCAACGTTGCGAGCGTCGCGGAAGTCGCTGCG 1553541 28 96.4 33 ...A........................ CTCCTCGAGGTCGAGCATCGACCGGGCCGGAGC 1553480 28 85.7 33 G..........A..C.T........... CGCGGCGATCTCGTCGGCCCGGTCGCCGTCATG 1553419 28 82.1 33 G..TA.........C...........T. CGACGACAACAACCTATGGGTGCTGTGCGACAG 1553358 26 89.3 0 G............--............. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 94.2 33 ATGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCGGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGAGACAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CGCGACCTGGTCGCGTGCGGGCTGGGCGAGGCCGTACCCCCGCGCATGCGGAACCGCCTTATTCGGTCGGCGCGGCAACCGCACCAACCGCCCGCTGGCTCCGGTCGAATCCGCCGGTCCCACCGGCGTCCCGCGTCCTCGACCCTCGGGTGCGCGCGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGGCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGCAGTGAACCTCCCAGTCGAAGGCCGCGCGGCGCCGCCCCTTCGCATTCCTAGACGTCG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1670029-1668964 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACYE020000001.1 Nocardia farcinica strain 3012STDY6733949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1670028 28 100.0 33 ............................ CAATCCGACTATACACACGCACGCGCAACAGCG 1669967 28 100.0 33 ............................ CCGCGGCACGTCCCACATCGTGGCCCGCGACCG 1669906 28 100.0 33 ............................ CCGCGGCACGTCCCACATCGTGGCCCGCGACCG 1669845 28 100.0 33 ............................ CGAGTACCTGCGCAAGCACATCGACGCCCAGCA 1669784 28 100.0 33 ............................ CGAGGACACCATCGACCTGCCGGAGGCCAAGCG 1669723 28 100.0 33 ............................ CACGGCGCCTCACCGCCATGACCCCGAGTTCCA 1669662 28 92.9 33 ..T.....A................... CACCCGCGCTGGCAGCTGGCCTACGAGCTACTC 1669601 28 100.0 33 ............................ CACCCGGGGCCGATGGAATCTCTTCGACCCGGC 1669540 28 100.0 33 ............................ CGTGGGCGAATTCCTCGCGCCGGTCAAGATCCC 1669479 28 100.0 33 ............................ CCGATCTCGTCGGCCGGGAGGCCCGCGCGTATC 1669418 28 100.0 33 ............................ CGGATGCGCCTGCTCGGCCGGCTGTACACCAGC 1669357 28 100.0 33 ............................ CGGCACCGAAGGGTGGAGCCCCAAGCAGTACAC 1669296 28 100.0 33 ............................ CTTCCCGGTCTCTGGCATTTTCGGGGAAAGGGC 1669235 28 100.0 33 ............................ CTGCCCCATCTGCGCCATGTCCCAGAACATCCA 1669174 28 100.0 33 ............................ CCTTGCCTGCACCCCTGCCCGGCCGGGCGAATC 1669113 28 100.0 33 ............................ CGGCCAGCCGAGCAGTGCCGGGTGGCTGTAGAT 1669052 28 100.0 33 ............................ CCGCGCCCGCCGCCTCCGGGGTGGAGGCAGCGG 1668991 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.6 33 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGACGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAACCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGTACCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CTCGGAGGCAGTCGCCCGTGAGCGGGACGGACACGGGCAACGAGCACGCGGTTGAAGGACATCGTGACCCGAGGCGATACGTTGCCACAACGGCGGCGAGACGCGAAAGGACTTGGTTGATGCGGACGGACAGCTGATCGGGCTGCAGGACCATCCGCGAGCAAGGATTTCGCGGATGGGCCTGGCGCAGCTCCACGTGCCGAGAATGGGGTGAGACGTTGCGCGGTGCCGAGAATGGGGTGAGACGTTGCGCGCCGACCTGCACCGGCTCGGGGAGGCGGCCGCGCCGACGTAGGTAACGACTGCATACACCTCACCCCACGGAGATAGCTATCTGATTGCGGCGGGGTCGTGTCGAGCCCGGCGGCGTTAGCCTTGGTACTTCGCCAGAGCAGGAGCCTCGAGCAAGGAGGGCCGCCATGCGCGGACGGTTTACCGGATTCGCCGCTGCTTCGGCCTGCGCGGCGTTGTTGGTTCTTCCCGGCCTGGGTGCGGTGTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1679956-1679183 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACYE020000001.1 Nocardia farcinica strain 3012STDY6733949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 1679955 29 100.0 32 ............................. AGTCACATGGCTGCGACGTTGGGCACGCTCAA 1679894 29 100.0 32 ............................. TGAGGAGTACGAATGCCGAATGCAGTCATGAC 1679833 29 100.0 32 ............................. TCGGGAGTCGTCGTCATTGGGTCAGCACCGCT 1679772 29 100.0 32 ............................. CCGTCGATGCCGGTCTGGTGGCTGTAACGGGT 1679711 29 100.0 32 ............................. AGCAACAGATCGCCGGTCAGGTCTGGATCGGC 1679650 29 100.0 32 ............................. CACCGGCCTGCATGCTGACCGCCGCCCGTGGG 1679589 29 100.0 32 ............................. GGCTTCCCGTGTCGACACGCCGACAGCTGGCA 1679528 29 100.0 32 ............................. CCGCCCAGTCGCGCTGAGTCGCTGAGGCGGCT 1679467 29 100.0 32 ............................. GCATCGGCGGTCGCCCTCGAAGCGCTGTCCAC 1679406 28 96.6 32 ....................-........ CAGCCGTCGTTGAGCTCGTTGCCGATCCGGCC 1679346 29 100.0 32 ............................. GGATGCGCTTGGAGACGGTTACAGCGGTACCA 1679285 29 96.6 46 .........................C... CCATCTGCTTGTAGGAGGACCATCGTTTCGGTGCGCCGAGCTCGAC 1679210 28 72.4 0 A..T....G..A..T..C..-......A. | ========== ====== ====== ====== ============================= ============================================== ================== 13 29 97.4 33 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GCTCGGCCGGTTGACCCCGATCGAGTACGAAGCGATCATGACCCCGGCAGCCCGACACGCTGCCTAACCACTGTCACCTGTTCGTGCACCAGCCCCGTCGGAGCGCGCGTCGTAAGGCACGTTGCACCAGCGACCGCGTGGCGAAAAATGGTTCAGCGGTCAGCGTGCACCTGCTGGTATTCGGCCAGGTCGGCCATTAGTGGACCATCACAAGCTAGGCGCTTAGCTTGTTCAGGGGTGGCGTGCACGCGATGCACGTCCAGGCTCGCGAGTAGGAACGAGGCCTACGACCGTGAACGGGTCAACAGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGATGTGGTGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGTGAAAGTGAATGAAAACCGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : GATCCGCCGCTCCCGTTACCGCCCGATCCGCGTGCTCCCCCCGCACGAGGGCGACCCCTCGGCTGGTAACGCCACCCCGCCGTGTGCGCCCCACGCGTGCAGGCAGTAGGACACACGACGACCGAGCGGCCGAGCGTTATAAATTCTCTGGTTTAACTCCTGCAAAATCGGGTAACGCTTGCTACCCTCGCTCATGCCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTTTCTCTCGTAAGGCATCTCGCTGATTCGGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCACACACGCCGGCGGATCTCGGTTGGCTTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTACG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1681993-1681667 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACYE020000001.1 Nocardia farcinica strain 3012STDY6733949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1681992 28 100.0 33 ............................ CCGGAGCCAGTCCAGGCGGGCGCGCATCATCAC 1681931 28 100.0 33 ............................ CGTCCAGCCACACGTCGAGCACGGCCGCACGCT 1681870 28 100.0 33 ............................ CGGGGAGTGGATCAGCTCCAGCGACTGCGGGAA 1681809 28 100.0 33 ............................ CTGGCTGTCGTTGGACTCTGGGTCGGCATCGGT 1681748 28 100.0 26 ............................ CGCACGAAGTCGGCCGTGTCGTCGGC Deletion [1681695] 1681694 27 85.7 0 ........A.T....A....-....... | A [1681685] ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.6 32 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GAAGAGCACGGCGAGACCTCACGACCGGCGAACTCGGAAGTCTGGCCCGGCGGGTGGGAGTGGTGCCCAACTGATACGCAGGTGGCTTGTGTTTCCACGTTCCGAGAGTGCTAGGACATGCAGAAACCGGTGGACAGGGTGTATGCGCCGAACTACAGACCGCCACAGGCTCAAGCGCACTCGACAGAGTGACTGTCCGATCGACATCTCCTGCGATTCTGACAGTGTGGGTCTGGGACGAGTCCCTCACTGCGTTAACTGCATGCGTGTCCGAACGGGAGGCCTACGTTCATCTGGAAGGACGTGTTCGGTCGTGTCGTCTGCGTGTGCGCCGCCCACTAACGTTTGTGGCAACCTATCGGGCGGGGCCTGGTCCATCCAGTCGATGGTGCAGCTCCTCAACTGTCGGCAGGTGTAATGGTTCGTGTGCCAGGGCAAGAACCCGAGTGAAAGTGAACGAAAACTGTGGGTTTCGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : GCAAAACGCACTGAACGGCCGGTCCAGCAGCGGTCTGAAGCAGTCGGGGCTGCTGCAGGGATAGGTGTCATCGATCTGGCTTGCCGGGAGGCGGGCCTGGAAGGATGTCATCGTGCCCAAGTCCTATCCCCGCGAGTTCCGTGACGACGTCGTCCGCGTTGCCCGCAACCGCGACGAAGGGGTGACCCTGGACCAGATCGCCGCCGACTTCGGGATCCATCCGATGACCTTGTCGAAATGGATGCGCCAAGCTGATGTCGACGAGGGCGTGAAGCCGGGAGCAACGACCTCGGAGTCGGCTGAGTTGCGGGAACTGCGGCGCCGTAACCGGCTGCTCGAGCAGGAGAACGAGGTCCTGCGCCGGGCCGCTGCCTATCTGTCCCAGGCTCAGCTGCCGGGAAAAAGATCTACCCGCTCGTGAAAGAGCTCGCCGCCGACGGGATACCCGTCGTGGTGACGTGCCGGGTGCTCAAGCTCGCTCGCCAGCCCTACTATCGGTG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1684451-1684240 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACYE020000001.1 Nocardia farcinica strain 3012STDY6733949, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1684450 28 100.0 33 ............................ CGCCCATTCGATCTGGTCGATGGCCTGCTGTGC 1684389 28 96.4 33 .....A...................... CGAGCTGATGCGGGATTTCGTAAGGGCACCCGT 1684328 28 100.0 33 ............................ CACCAACCATCCCGACGCCGACCACCTGTGTGC 1684267 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : TGTTCAGCCCGTTGTCCAGGCGATTTGGTTGCGGACACGCCGGTGGTGTAACTTTCATCAGGCGCGAGGGAAACCGAGCGCGACCCACCAAGGGGCTATGGCGCAGCTGGTAGCGCACCACACTGGCAGTGTGGGGGTCAGGGGTTCGAGTCCCCTTAGCTCCACTTTTTCTTTCTGAAAGCGCGTCCGAATGGGCGCGCTTTTTGTTTATTTTCTTGGGCCTCGTCCACCCCGACGACGTGCCCGTCGTCACGGCGGACGGGATGCCGGAACACCGGCGCCGCCTGGCCCGGGACTCATCTGAATGTCACCATGCATGTCGCTCGCTAAGGTGTGGGGCACCGTTTGGGCAGGGCGCGGAGGCCCTGGTTCACCAGCTTCGATGAAGCGGGCTGATCGCGATCGGCCGACGCGACGGTGCGTTTGTTCGGGAGGTGAGGAACCGACTGAAAGTGAATGAAAAAGGCGGACGTTGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : TCCTGGCGCTACCGACCGGCAGGGCGGTCGAGATACGCCCGGCGCCCACGGGAGTACCACAGTTGTTCAATCGTCGTATTCGCTGGGCCGAAAGGCCATTGCGAACCCGCGACGAGTGGCGGTCCGATCGCGAACGCGGAGCCGTCCTGGGCAACCGTCACCGCTGTAATGCGCCGTTGACGGCTCCTCGTGAGACGCACTTGGCGCGCCAACTACACACCGTTGATGGACAAAAAAGCCAGTCGAGCGAGCATGAACACACCGGCGCGCCGGGCCTTGCACATTAGCCTCGCCGGTCCCGGATGCTTCTACCTGTTCGACCAACCGTCGTGTGCTCTGCCAATCCCAACTGCGGTCAGAGCAGTCGCGCACCCGGCGGTATCCCGCTCCGGCAGCCAACTGCACGCGTCCACCCGTCCCGGCGCGTGCGCGTGCATCCCTGCCGCTGTCTCAATCCGGTTGTGCACCGGCACCTGAGGAAGCCGGCCCGGCCCTGTGGC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 2354209-2355402 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACYE020000001.1 Nocardia farcinica strain 3012STDY6733949, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 2354209 29 100.0 32 ............................. CGATGACCGACACTACCCCCGCCCACACCGCC 2354270 29 96.6 33 ............................A CCCGCGCACCTGCGAGAGGTAGGTGTTCGGGCT 2354332 29 100.0 32 ............................. TCGGCGTCCTCGGCGGACACCTCGGCGTAGGG 2354393 29 100.0 32 ............................. TCCCCTGCCGCACGGTGCTCGTTTTCCTCGGC 2354454 29 100.0 32 ............................. ACGGTCGCCATGTCGCTCTGGTGGATGGACCA 2354515 29 100.0 32 ............................. ACGTGATACAGCGACCGGTACAGCTCAGCTGC 2354576 29 100.0 32 ............................. CGGTAGGTCACCGCCGAACGCGCGAACACCCG 2354637 29 100.0 41 ............................. CCCCCCCCCCCCCGGACCCACCGGAACCGCCGGTGCCACCC 2354707 29 100.0 32 ............................. GCTTCCCACTGCTCGCGCGTGTACACCGTCAT 2354768 29 100.0 32 ............................. GTCGTCCTGCCAAGCAATCAATTCCATGTCCA 2354829 29 100.0 32 ............................. GCGATGATCTCGCCCACGGTGGCGAACGTGGC 2354890 29 100.0 32 ............................. CACCTGTGCCCGAAGGCGGCGGCTTTACAGGC 2354951 28 96.6 32 ....-........................ TCGTTCTTGCGACGGGGATCTCGTCGCAGTCA 2355011 29 100.0 33 ............................. TTGGAGGCACCCGAGCGGCGGTCGACCTGCTCC 2355073 29 100.0 32 ............................. CCGTCCGGCACGCCGCCGGGCCAGAAGACCTC 2355134 29 100.0 32 ............................. CAGCCCGACGACCGCGTGGTCAGCCTGAGCAA 2355195 29 100.0 32 ............................. TATGCGGAGGAAGTAGAAGAGGTGGTAGCGCT 2355256 29 96.6 87 ......................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGAAGTGCCTCCCGCGGGAGGGATGAGCCCGAAGACTCGACGCGTTGTCCCGCCAGCGGG 2355372 29 82.8 0 .........C....T.....A......GG | A,T [2355389,2355397] ========== ====== ====== ====== ============================= ======================================================================================= ================== 19 29 98.6 36 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCGTGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAGCACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCAGCCCCGATGAAATGCACGGTCATGAGGGCGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGGTGGTCATGGGTCGTCGCCGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGATCCCGCAGGATCGGCGACGTACGATGGCGGCGGCCTGCCCGTCTTGTCCTTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : GTTGACGCCGGGAACCCGGAGGCCGGTTTCCTCTTCGACCTCGCGTGCTAAGACTTGGTCGAGGATCTCCCCGGGTTCGACTTTGCCGCTGGGCAGTTCCCAAATGCCGCCCATGAAGTCGTTGCCGGGTGGGCGCAGCAGCAGGATGCGGCTGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGAGGTCTTCGAGGCGGGTCGACATCAGGTTCATCCATTTCGCCCGGAAGGAGCAGCTGACGGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAATTCCTCTGGGGTGACGCCGAGTTCTGTGAGGATCGCGCGCAGTTCTGCGAAGGCTTGGGGCAGGTCGGGTTCTTCGGCTTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCGGCGGCGGTGAACTGGAAGTTTTCGCA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 2362569-2363085 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACYE020000001.1 Nocardia farcinica strain 3012STDY6733949, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2362569 29 100.0 32 ............................. TGGTTTCGCCGCCATGGGAACTCGCCCGAGAT 2362630 29 100.0 32 ............................. GTCGGTGTCCGCGTGCACGTCTCCGCACTCAA 2362691 29 100.0 32 ............................. CGCGAGATCTCCTTGCGGGCCCGGCGCCGCTC 2362752 29 100.0 32 ............................. GGTCGGGAACGGCGGGGGAACACCTCGACGCC 2362813 29 100.0 32 ............................. GCCGCACCATTGCGGCGCTGATCGGCATGTCA 2362874 29 100.0 32 ............................. GGAACTCGCCGAAGCGGCCCACCTCGCAGTCA 2362935 29 100.0 32 ............................. GCCAGCGCCGCGCCGGACCGCGGCGAGACATA 2362996 29 100.0 32 ............................. CGAGCATTCTTCGGCGCGCACGCCGACGCGGT 2363057 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGACAATCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCTGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCCACGGGACCGGCGACGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGATCAGGAAGT # Right flank : CTGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGACTGGGGCGCCGCTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTTCCGCGCGGAGGTCGACCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGTCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //