Array 1 242617-242161 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053585.1 Salmonella enterica strain 2011K-1440 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242616 29 100.0 32 ............................. TCTTCAGGCGAGCATCCGTAAAATTCTAATGG 242555 29 100.0 32 ............................. TTAATCGTTCCCCACGTAAGCGGGGATTAGCT 242494 29 100.0 32 ............................. TTATTTAGCGGGGGATACGGTGACTTGGGGCG 242433 29 100.0 32 ............................. GGCGTTAAAACGCAATATTCAGCCGGATACGG 242372 29 100.0 32 ............................. CGGGCAGACAGCAGAATTTGCAGGATGTTGTG 242311 29 100.0 32 ............................. CACCGCTGATAAATTAGACGACAGCTACGATA 242250 29 100.0 32 ............................. GTGAAGTGGTTCAATACCTGATCCGCGCCACC 242189 29 72.4 0 ..................CT..GTTTGT. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.5 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGTTCATCCCGTACCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTCGCCGACGATATGTGCAAAATCTTACTCTCCCTTGATGTAATGATGTATTAATCCCCGAATTTTCCGTCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGTGTGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : GGGTTAGTTCACTCCGGCTGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATAGTGAAGGCATGCCTCAGGATTATCATCAGCTTCTCATCCTTCCCCGTATGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGTACGGAGAAATATGAGGCAGTATGCTTAACGGGGGTAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGTAC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1417996-1416869 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053585.1 Salmonella enterica strain 2011K-1440 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1417995 29 100.0 32 ............................. GATAAATTATCAACACATCATATTTTGAATAG 1417934 29 96.6 32 ............................T GATGACGCAATATCATCCCTGGGTGATGAGGA 1417873 29 100.0 32 ............................. CCGGATAAAATCCACTGCTACCGGGTCCGTCA 1417812 29 100.0 32 ............................. TGATATCAGGATCGATATCGCCGAACTCAGAC 1417751 29 100.0 32 ............................. ATGTCCGCCTGTTGTCGCTGGTCTGGAATGAG 1417690 29 100.0 32 ............................. ATTCCTTGTCCGCAACTTCGATCATCGGTTCG 1417629 29 100.0 32 ............................. GCGATATCGTCGTCATTATCGTCGCAGTCGTC 1417568 29 100.0 32 ............................. ACAATTTAGAGCGCGCCCGACGCATGATTGTC 1417507 29 100.0 32 ............................. AATCCCGCGCCATCAACATTTCTGGTTATGTG 1417446 29 100.0 32 ............................. GCGTATTTAGAAATGCGTACCTTCCCGGACGC 1417385 29 100.0 32 ............................. CGAACCTACAGCCTCGTTAGTAACAGTTTCCC 1417324 29 100.0 32 ............................. AAACGAAATTCGGTATTGAGGTGCAGACATCA 1417263 29 100.0 32 ............................. CCTGGCTACGTCGCACTCTGCTTGAATGTCCG 1417202 29 100.0 32 ............................. ACCACCGGTTACTTGTCGCGCATCTGATACAG 1417141 29 100.0 32 ............................. GCCGTCAGAGCCGCCGAACGGCGGGTTGCCGA 1417080 29 100.0 32 ............................. ATTATCTATGAATGAAATAGGTGAAATGGTAG 1417019 29 100.0 32 ............................. ACACTATTTCAAGAGCTATTTATAATTCTAAA 1416958 29 100.0 32 ............................. GCGAGAACGTTGGTAGTGTTAACTATAAAATG 1416897 29 93.1 0 ...........................GC | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAGGATGTGCTCGCGGCAGGTGAAATTCAACCGCCGTTACCTCCAGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCTTTGGGGGATTCCGGTCATCGGAGTAACTGACGATGAGTATGCTAGTGGTGGTTACCGAAAATGTTCCTCCGCGCCTGCGAGGAAGGCTGGCCGTCTGGCTACTGGAAATTCGGGCTGGTGTGTATGTTGGTGATGTTTCAGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTGCCTGTTGCAAATCAATAAGTTAGAGATCTTTAAAAATAAGGAAAAGTTGGTGGATTTTTTGTATGCTAAAAACGGCTTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1436482-1435293 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053585.1 Salmonella enterica strain 2011K-1440 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1436481 29 100.0 32 ............................. CTAAAATGATTAAACTTTATAATTTTATTTAT 1436420 29 100.0 32 ............................. CAACCGCGTCACGGGATAAATTCGGCGCAGGG 1436359 29 100.0 32 ............................. TTACGCCACACGAAATCAGTTACCAGTCCAGG 1436298 29 100.0 32 ............................. ATGCCCCTGCATTTAACTACGAGTAAATTTTA 1436237 29 100.0 32 ............................. CCGCCTCCCCACAAAACGGACAGGGTAATAAA 1436176 29 100.0 33 ............................. ATAACTTCTGTAATAATCAAGAATAACTAAGGC 1436114 29 100.0 32 ............................. GTTTCACCCTCTACGCGCTCAGGTGGGACAGT 1436053 29 100.0 32 ............................. CCTGCGCCAGAGTTTTACGATGCTGACGATAA 1435992 29 100.0 32 ............................. GATGCGGCAATCAGGCTGGCAACTGACCAGGC 1435931 29 100.0 32 ............................. CAACGTTGAAATTGCGCGCGTTTGGCTCCCCG 1435870 29 100.0 32 ............................. CAGAGGCACACCGTTATTGACTGCATGGTGAA 1435809 29 100.0 32 ............................. CGGTGCCGGGCCGGCGTCACTTTTGCGGCCAA 1435748 29 100.0 32 ............................. CGCCGCAGATCCCTGAGCTGTTGTTTGATTTG 1435687 29 100.0 32 ............................. TAGATCGTGATGCGGCGGTGGCTGAGTTAAAA 1435626 29 100.0 32 ............................. CGATCTCCTGACGCTCCGCGACCAGTTCAGGC 1435565 29 100.0 32 ............................. GGGATTCTGCTGGATATAGATTCACCTGGCGG 1435504 29 96.6 32 ..........................T.. GATGGCGAGTGGCCCATCGATAATGGAGTCAT 1435443 29 96.6 32 ............................C GACACGCCCCACCGTGTCGTATCTGTTTTTCC 1435382 29 96.6 32 ............................C TGTATGTCGTTAATATGGGGATCGCTGAGGTC 1435321 29 72.4 0 ....C.......TC..........GCAGT | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATACGAATTTCGATGAGTGTTTAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTACAAACTTTTTTGCATCAAAATCAGTGAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGATGATAAAAAGTAGTTTATAAACAATGATATACATTTAGA # Right flank : AGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCTCAGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGGTGTACACGCGTGACCCTCTGCCGATTGGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //