Array 1 30805-29553 **** Predicted by CRISPRDetect 2.4 *** >NZ_APAH01000134.1 Salmonella enterica subsp. enterica serovar Havana str. CFSAN001082 CFSAN001082_44000007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30804 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 30743 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 30682 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 30621 29 100.0 32 ............................. GGACAAAGACAACGAGCGCATGGTGCATACGG 30560 29 100.0 32 ............................. AGGCTGGTGTAATTATCGCAGGGCATGGGCGG 30499 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 30437 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 30376 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 30315 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 30254 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 30193 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 30132 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 30071 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 30010 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 29949 29 100.0 32 ............................. CCTGGCACTCTAAAGCGGTGCGCCATACCCGG 29888 29 100.0 32 ............................. ATGTCTGGCAGATACTGAGTTTCCAGCTTGTT 29827 29 100.0 32 ............................. ATTGTTGCGCCACCAAAATTTTGAGCGCCACG 29766 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 29705 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 29643 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 29582 29 96.6 0 A............................ | A [29555] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGTGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //