Array 1 1111570-1111945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNCB01000011.1 Paenibacillus polymyxa strain CICC 10580 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 1111570 34 100.0 34 .................................. CGCTCTTGCGTCCTGAGTACGTGCCGTAGTTCAG 1111638 34 100.0 35 .................................. AACCTTAACGCAGGCACGGGATTGATCGGGTCGCC 1111707 34 100.0 35 .................................. ACTACACTCCTTGTCGTACTGCTCAGATAGGCGCA 1111776 34 100.0 35 .................................. TACATGATCGGTAAAATCATAGTCGCCATTGTGAA 1111845 33 91.2 35 A..........A...-.................. GATCCAACCGTTGAGGGTGGTCGTGGAATGAATCG 1111913 33 85.3 0 T..........A...-.........A...A.... | ========== ====== ====== ====== ================================== =================================== ================== 6 34 96.1 35 GGTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : CCAAGTTCCGTATTCGTGTCAATGTCATTTATCCAGGGGCCATTTCGACAAATATTGATGAAACCACGGAGAAATCGGAAGGGTTGAAGCAGATTACCATCCCTGTGCAATTTCCCGAGGGAGATCAGCCGTTAGCAGATGGACCGGGACAGCCCGAACAGGTTGCTGATTTGGTAACATTCTTGGCCTCTGATCATTCGCGTCACATCACTGGCGCACAAATTGTGATTGATGGGGCAGAGTCGTTATTGTTTTAGAAAATGGAGTATTCTCTGGGACAGAGAAATGTTTTGTGGTATCTTAAGTGTATTCTTACTTACGGTGCGAATGTGAAGCTCACATAAAAACCCCAGATCCTTCGCACCTCGAAATTTGTCGAAATGGATTTATATTCATTTTATCGTTAGAAGTCAATAGTCGATTCAAGCTTTTTAAGCATCGTTATTTTCGAAATTATAAGGAATTAATACCGTTAGAGTATTAATTCCTGCATTTTCGCT # Right flank : TTATCTATAGTACCTAACTTGCATAAGAACTCCCAGCAGATTCTTCATGATTGTAGCCAAGACATAATTGATATTAAACTTTAGGAATATCGGTTTAGTTATCTTAAAAATATTATTTCCACATGACTATAAAAATATTTGTTTACATAACGAGAATAAATCTAATATGATTAAGAAGTCGTTGAGAATCTAGTGTTTTTAGGCGAAATACAAACCTCTTCACATTAAACAACCATAAGTTCGTAAAATGAAACCTGAGATAGGATACGGAAACCAAAGGCTTTAAATTAAGTAGATAAAAGAGGAGTATGTAGCATATAACGCTACGACAATATATAAAGAATTGTCGATAAATTCACTTAACAACGCAAGTGTTTAAGTGGTTATTCTGGGCTTTGTCGATATTATCTTATGCATGGTCACACATTTAAAATATTTGTTCAATGGAGGTAAATAGATGAATTTATTAGCTATTCCTGGTCTGTATTTTTATATCTATC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 2 1121057-1123195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNCB01000011.1 Paenibacillus polymyxa strain CICC 10580 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1121057 33 100.0 35 ................................. CATGTCCTACCTCCTTACCACCACTGAGCTCCGCC 1121125 33 100.0 36 ................................. AGGTCTTGGCGTAGTTGCTACGTCCTTTACGCTCTG 1121194 33 100.0 35 ................................. TAAGCTGCAAGCCTAGGATGGGCCTCTGAACCTCT 1121262 33 100.0 34 ................................. TTTAATAAGAACAAGGTTTTATATGGTTTTTCAA 1121329 33 100.0 34 ................................. CACTCATAGACCATTTGTGGGCCATACTTGGAGG 1121396 33 100.0 37 ................................. AGAATAGGCCCATGCGTCGTCGTACACACGCATAGTC 1121466 33 100.0 34 ................................. CAAAACGCTTTGATAATCGTCCTGTTGGACGTGA 1121533 33 100.0 37 ................................. ACCACTATAGCAGGGATGTCTAACCCTCAAGTGGCTG 1121603 33 100.0 34 ................................. TCACCCTCGTGCTTAGGCCACAGCTCAGCGTCTC 1121670 33 100.0 33 ................................. CTCGCTACAGACAAAGAGAACCAAGCCCTGGGC 1121736 33 100.0 35 ................................. TGTCCAATGCCCCAGCATCCACGACCACCTCTCTA 1121804 33 100.0 35 ................................. AACCACAACGTCCTGAATGTTGTAATCCTTGTACT 1121872 33 100.0 36 ................................. CATCCTACCTAACGAGATACGCATGTCGGTTAGGAG 1121941 33 100.0 34 ................................. AGCCTATCCGTTACAGGCACGAAGGACGGATTGT 1122008 33 100.0 36 ................................. CATTTATCTATACGGATGTACTGTCCTCCGTAGAAC 1122077 33 100.0 34 ................................. TAGCATTGCGACACTGCAATACGCTACCGACGCC 1122144 33 100.0 34 ................................. CATTTGTAACTGCTTATGTAGCTCTACTTTTGTA 1122211 33 100.0 34 ................................. CGCTTAAATCTATTACCGACAACGCCCCTGCTCC 1122278 33 100.0 37 ................................. AGGAGCTAGGAGCAGATATCCCGAGCATTCGACCTAA 1122348 33 100.0 35 ................................. AGGAAGTTTCGCATTAAAAGGCACGTTATCGCTCC 1122416 33 100.0 34 ................................. TCCAACGAGCCGTTGACGAGCCAGAAGACGACGA 1122483 33 100.0 35 ................................. TTTATGAATCTAAGCCAAAACCATTGAAGGCGCGT 1122551 33 100.0 35 ................................. GTATACCAGATACTTTGCCTCAGCTCCGCATCCAC 1122619 33 100.0 35 ................................. GGCCTCATCGCGCCACTGATACTGATGGTCCTTAC 1122687 33 100.0 35 ................................. ATCCACGCCTGCTGTTTTGCTACCTTTGTTTTTCC 1122755 33 100.0 35 ................................. ACAAATAACTGCAATTAGTAGCTTGAAAAACCTTA 1122823 33 100.0 35 ................................. CGCTACCGGACAAGACCCCTCCAGAAGTGCCTGTA 1122891 33 100.0 35 ................................. AACAAACAGGGGGGAATCCCCTATGTGTCCGGATA 1122959 33 100.0 36 ................................. CGTTTGCTTGCTGATGTTGGCTAGTTTGTCCTCGAA 1123028 33 100.0 36 ................................. AATAAAGATCCAGACTTAAATAAAAAAACAGGTGTA 1123097 33 100.0 34 ................................. CGCTAGATGGTAAGAAAACTGCTTATGAATTTAC 1123164 32 87.9 0 ..........A...-.........A...A.... | ========== ====== ====== ====== ================================= ===================================== ================== 32 33 99.6 35 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : CCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATTACGTATGATGTAAGCACGGTAGATAGAGAAGGCAGAAAAAGACTGGCAAAAGTTGCGAAAAAGTGTGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATCTTAGACTCGACCCAGTTCCGCCGCTTAAAATATGAACTTGAAGAATTGATAGACAAAACGGAAGACAGCTTGCGCTTCTACAATTTAGGAGATAACTATAAAAAGAAAGTAGAGCATATAGGGGCTACGGAAGCTTACGATATGGAAAGTCCTTTGATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGGAATTTGTCGAAAAGCAATTGAATCAGTTACCATCAGTAAAAGTCAATGGTTGATACAAGCCTTTTTGGCATCAGTTTTTGCGACAATGTGTGAAATTGATATCATTAGAGTATCAATTACTGCATTTTCGCT # Right flank : TATCTTTCATTGTGCCTCCTATCGGATAAGCTGGTTACGCTACATGTGAGTGCATGGATGATATGAAAAAGAAGTCTCGTTTCGTGCCCCGCCCAGCAGTAAATAGTGCAAATTTCTTTTTAACGGATTCCTTTTTCGACAAATTCCCCCTTACTTTTATGCAATAATTAACTAACATTACTATGTTGAAGCATAAAATTAACTGGGGAGTTGCTTATGAGAATTTCCATGAGTAAGTTTCTAAAACGCTATGTAACGATTTTATTGAGCTACGCAATAGGTATAGGGTTATTTTACGCTTTAGGATATAAGATGAGCGCTATGGGCATCTATGCAATTTTGACAGGAATTGTGACTGGAGAAATAGTCAGCTTCGCATTATTAAAGCGCGAGAAATGAACTTATGTATCCCTTGATTGTATCAATATCAGGGGATTTTTCATGTAATTAAAAGGTCCCGTGAGTTTCCGCATGGGACCTCTATACCATTTGTTGGTGAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 94373-93940 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNCB01000017.1 Paenibacillus polymyxa strain CICC 10580 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 94372 32 100.0 35 ................................ TTAACTTGATCCAATGAAAGGTAAGTATACACTCT 94305 32 100.0 35 ................................ TGCATAATGGGAATCTGTAGCATACCCAGCTTTAC 94238 32 100.0 35 ................................ TCCATCCTATTAGCAATCTGATGTGTCTTTTCCCC 94171 32 100.0 34 ................................ ACGTTTTATGTCAAAACCATTTATCCCTATAACC 94105 32 100.0 33 ................................ TTCGCAAAGTTATCGTCAGCATATTTCTTTGCG 94040 32 100.0 35 ................................ GTACACCGCAGCCGACGCTCGAAAATGGCTTTGCC 93973 32 78.1 0 ....T..C.........G.......C...TGG | AC [93943] ========== ====== ====== ====== ================================ =================================== ================== 7 32 96.9 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : TTTTAGTGATTAAGTCGCACTCTATATGAGTGTGTGGATTGAAATTCTTGAACCCGTAGGTGTAACGCCAGACGATCAGGAGGTCGCACTCTGTATGATGCGTGGACCATGATGGAGTAGCCGTCACCTGGTCGTACGATTGGAGAGCGCCGTTTTATCCGAAATAAAAGATCCGATAAGTGGAAGAACGGATATTTTATGCGATTTGGAGGGTGGCCTACGGGTTAGTACACTTCCGTGTGGGATGAGGTGATCTTGTAGCAAAAAGATGATTTTCACTTCCATGGATGCCATAAATACCCGCAGTTAAACCTATTGTGGTGCGAATGTGAAGCTCACATAAAAACCCCGTGTCCTTCGCACCTCGAAATTTGTCGAAAAGAAGCTGAATCAGTTACCTTCATTTAAAATCAAGCGTTGATCCAACCCTTTTTGGCATCAGTTTTTGCGATAATGTGTGGAATTGATATCATTAGGGTATGAATTACTACATTTTCGCT # Right flank : AGAAGCCGTCACCTGGTAGTACGATTGGAGAGCGCTTCTTTATTCGAATAAAAGATCCGATAAGTGGAGGAACGGATATTTTATGCGATTTGGAGGGTGGGCGACGATTTAGTACACTTCCGTGTGGGATTAGTTGATCTTGTAGCAAAAAGATGATTTTTACTTCCATGGATGCCCTAAACATCCGCCGTTAGATAATGTGAATGTTCTATTATGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCACACCTCGAAATGTGTCGAAAAACAACTGAATCAGTTACCTTCAGTAAAAATCAAGCGTTGATCCAGGCCTTTTTGGCATCAGTTTTTATAATAATGTGTGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCTGTCGCACTCCATGTGGGTGCGTGGATTGAAATCTGCCACTTGCTCACTAGTGTCCCCTTTAGCCATTCCGGTCGCACTCCATGTGGGTTCTGGATTGAAATGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 119959-119593 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNCB01000017.1 Paenibacillus polymyxa strain CICC 10580 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 119958 32 100.0 36 ................................ CTCCTTAACTGGAGTGTTGTACAGCGTAAACTCTGC 119890 32 100.0 35 ................................ ACGGTTGTAGCTGGTTTTCGTAAGTACCGTAGCTG 119823 32 100.0 35 ................................ ATAGCGTCATGCGCCTCCTGTGTATCATATTTAGT 119756 32 100.0 34 ................................ CTCGGCTTTGGGATAACCCTGTAACGGCGGTACG 119690 32 93.8 34 .........T.C.................... AAAACTGCTAACTTAGTTTGACTTATTGTGTTTT 119624 32 75.0 0 T........T..A........AAT.....T.C | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 94.8 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : GCGTGGATTGAAATAATTTCATAAGATTCGCCTGCATTTGGTAAATAAACGTCGCACTCTATATGAGTGCGTAGATTGAAGTAATAAGCTCGTCCCTCTTTTGAAGCTTCCATTCCTGATCTTACGATTTGGAAAGCGCGCTTTATCCGAAATAAAAAGGTCTGGTAAGTGGAGAACGGATGTTTTATGCTATTTGGAGGGTGGGCGACGGTTTAGTACACTTCCGTGTGGAATGAGCTGATCTTGTAGCAAAAAGATGATTTTTACTTCCATGGATGTCATAAAAACCTGCCGTTAGATAATGTGAATGTTCTATTATGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGGAATTTGTCGAAAAGCAACTGAATCAGTTACCTTCAGTAAAAATCAAGGATTGATCTAGGATTTTTTGGCATCAGTTTTTGCGATAATGTGTGGAATTGATATCATTAGGGTATGAATTACTACATCTTCGCT # Right flank : GATAGCTTAGAAATCCCTTATCCAATGAGGATGAATTCCTGAAAACGATACTGAAAAGCATCCCAAAATTTCAAGAAGCCTTACGTGACTTATGAAGTTAAGTCTCAGTAAAAAAGTCCTGCTAACTTTAGCAGGGCTTAAGATATATTGGAGTTATCACTTTTGTTGTTACCAATCTAGTCAATAAACCTTAAAATATTGTCAATGCTATTCCACTTGTGCCCTACCATCAATCAGATGAAACCTATCGGTGCTTATTAGAAATTGTTAGTTAGCAATTGGTAGTCATCTATAATTTTAATAAGTTCTATAATGCCATATATAATTGCATTAATGCTTATCCAGTCCCCTTTACTCTTGCAGACAACGAAAAAGCCCGCTGCCAGAAACGTTTGGTTACGCTCCGCGCGGACTCTACATTTTTGATATATATTTGGGTATCAATCGAACTGTATGTTTCAGTTGACCCTTGATGCCTAGAAAGGATGGTGAGCGGCCTC # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 140532-140364 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNCB01000017.1 Paenibacillus polymyxa strain CICC 10580 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 140531 32 96.9 37 ........C....................... TGGCTGGCAAACCAAGCTGGAGATACATAGTTGTCTA 140462 32 100.0 35 ................................ ATGCTTACACAGTTCTAACCAGTCGTAAGCGAGGT 140395 32 71.9 0 TAT.TCGC.C..G................... | ========== ====== ====== ====== ================================ ===================================== ================== 3 32 89.6 36 GTCGCACTATATATGAGTGCGTGGATTGAAAT # Left flank : GGGTTACAGACATCCTGCCATCCGGCAAAATGACATTAACGTACTAGTTCATAATGCAACTTGCCTTCTTTAATTCTGGCCTACAGCTTTTCGTTATTACGAGGCTAGGAGTGTGGAGCTACTAAGCCAAGCTACTCCCTCCGACCTTGTCTACTTAGACGTTTCTTGAAATCACGTTGTAGCCCCAAAAAACAAAAAAATTATATTGCGTTACGTAGAGAGGTGATATCCTAATGCTAGAATGCATTAGAAAATATCGCCCCTTCTGCATCCACTCGATAAGCTGTTTATTCTTGATTATAGGCTAGCTGCTATACCTGGTGCGAATGCCAAGCTCACATGATTTCCCCGAGTTATTCGCACCTCAGATTTTGTCGAAATCGCATTGAATGTGAACAACACCTGAACTTTAATCAGTGATTTTAGTATAATCTAGTTACCATATTTACTGTTGTACGCTACAATAGAGATAAAGGCTCTTAGATACGTAGTTTTTTGTT # Right flank : CTATGCTTAAACGAAATAAACAGTAATGTGCGTAGTCGCACTCCATGTGAGTGCGGACCATGATGGAGCAGCCGTCACCTAGTCGTACGATTGGAGAGCGCCGCATTATCCGAAGTAAAGAGGTCCGATAAGTGGAGGAACAAATATTTTATGTGATTTGGAGGGTGGGCGACGGTTTAGTACACTTCCGTGTGGGATGAGCTGATCTTGTAGCAAAAAGATGATTTTTACTTCTATAGATGCCATAAAAACCTGCCGTTAGATAATGTGAATGTTCTATTATGGTGCGAATGTGAAGCTCACATAAAAAAACCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGCAACTGAATCAGTTACCTCCAGTAAAAATCAAGGGGTGATTCAGGCCTTTTTGGCATTAGTTTTTGCGACAATGTAAGAAATTAATATCATTAGGGTATGAATTACTATATTTTCGCTGTCGCACTCCATGTGGGTGCGTGGATTGAAATTACG # Questionable array : NO Score: 6.65 # Score Detail : 1:0, 2:3, 3:3, 4:0.48, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTATATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 264130-264297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNCB01000017.1 Paenibacillus polymyxa strain CICC 10580 contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 264130 32 100.0 34 ................................ ATCATTGCCCAAACCATTTCTTTATCCATCGTCA 264196 32 100.0 38 ................................ GATCTCTCCAAATCGGAAGCTCGCTTGAATCATACCCA 264266 32 93.8 0 ...................T...........A | ========== ====== ====== ====== ================================ ====================================== ================== 3 32 97.9 36 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : AACAGTTTGCAAAGCGCTGAAACAGGATGTGCTTACAGCGCATCATCAGGATTATAACGGTATTATTGTAGAGCCATATCGTAATGATATTGAGTACAAGGCTCCACGTGATGATGATTCTCCCGTCCCTATTCCATTTCTTTCAGCGTCGGCTCACTTTGGAATTATATTAACTTGTGAGGGAGAGCAGGAATCAGCTATGAAGTGGCTAAGTCTGGCAAAAACGGTCCTGCTCGGAGCGCTAAGAGATGAAGGCATTGGCGCGAAGACCAACGCGGGGTATGGAAGGCTTTTAGAGATTGAATGATAGAATCATGAAGGTACGAATGCGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGTAATTAAATCAGTTGCATTGAGGAAAAGTCAATGTTTGATTCAAGCCTTTTTGGCATCGTTTTTTTCGATAATGTTTGGAATTGATATCACTACAATATGAATTACTTCATTTTCGCT # Right flank : AGTGCATGGAAGAACTAATGACAATGCCTTTCTAATTTGCATTCTTTAAACTCAACCGAGAACAAGAGGTATATCGCACTGCGAGTCAGTTAGCAACATTATCAGTATCTTGAAATCTACCAACCGGCTGTCGAAGGACAAGATCATAGTCCCATTATGAGTCGCTATTTTAGCGGCTCTTTATTTTATCGAATACAAGTTCTCGTGTCCCGACCAAGGAAAAGAACTTGTACCGATTGCCGGAATGGACATGAACTAGTCTGCTGCGTTCGATTATGCTAGTTATGAGTATTCTCCTTGTGTGAATGCTGGTGTGGTAACTTTCATTCTTCACGAATTAGACTACGAGAGTTTTTCTATTTATTCCCAGTGTGTGTCGCACTTCATATTACAATCCGTCATACATAAAACAAAATAAAGTTAGAATTTAATTTGAACACTTTTTCTATTTTTTTTACGTTTTAGTCTAAAAAATATACAAATTCATTAAAAATATATCG # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //