Array 1 483252-485171 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKS01000003.1 Salmonella sp. hn-f5 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 483252 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 483313 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 483374 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 483435 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 483497 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 483558 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 483619 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 483680 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 483741 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 483802 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 483863 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 483924 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 483985 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 484046 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 484107 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 484168 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 484229 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 484290 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 484351 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 484412 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 484473 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 484534 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 484595 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 484656 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 484717 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 484778 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 484839 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 484900 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 484961 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 485022 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 485083 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 485144 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.4 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 502804-504785 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKS01000003.1 Salmonella sp. hn-f5 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 502804 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 502865 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 502926 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 502987 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 503048 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 503109 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 503170 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 503231 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 503292 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 503353 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 503414 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 503475 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 503536 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 503597 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 503658 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 503719 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 503780 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 503841 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 503902 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 503963 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 504024 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 504085 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 504146 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 504207 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 504268 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 504329 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 504390 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 504451 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 504512 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 504573 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 504634 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 504695 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 504756 29 100.0 0 ............................. | A [504783] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //