Array 1 4327598-4332554 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031462.1 Xanthomonas oryzae pv. oryzae strain PX079 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4327598 31 100.0 34 ............................... CAACCTTGCGCCCCCTGCTGGTGCAACAATCCTG 4327663 31 100.0 34 ............................... TTGGCGGAATCGGTGGCGGTGCAGGCAGTGCTAC 4327728 31 100.0 34 ............................... CCACCAACGCTAGGGCAAGTCGCCCTGCTTGAGG 4327793 31 100.0 34 ............................... GCAGTTATGTTGCCCTCAGCCTGGGTCACTCTGG 4327858 31 100.0 33 ............................... TGCAAGAGGAGCTAGAGCAAGCAGGTGCACCAC 4327922 31 100.0 37 ............................... AACAAGATCACTGAGAGGAGTTCCGCGAAATGAGCGA 4327990 31 100.0 35 ............................... GCAGTCTGTATTGCCGCCTGTCTGTCAAGCTGCTC 4328056 31 100.0 34 ............................... TCATTGTCAAAGAACAGATCAACATCTCCTTGGT 4328121 31 100.0 36 ............................... TTCTAGACAATTTTCACGGGCACAGGAGCGCTCACC 4328188 31 100.0 33 ............................... TCTTGCTCTTGCCCATGTTCTGGTTGTTCTGGG 4328252 31 100.0 36 ............................... TTGTGCTTCCTTGATCTTCTCATAGCGATTGGTATT 4328319 31 100.0 36 ............................... ACATAGTTCCAAAATTCAGCCGATTCAGGCACAACA 4328386 31 100.0 37 ............................... ATCACATTGTTCAGATCAAGGCTACCTGGCTCTGGCC 4328454 31 100.0 34 ............................... TTCTTAATCCGGTAGTCGGAGGTGGAGAACGAGA 4328519 31 100.0 34 ............................... GCAAAGTAATGACTGATGGCCGAATTGAGAGCCT 4328584 31 100.0 35 ............................... CTGATCACAGGTGCAAACCGGTTTGGTTATGACAA 4328650 31 100.0 35 ............................... TACGGGAGAGCTAGTCCCAATGATGCTCATTGGAG 4328716 31 100.0 35 ............................... TGCCTGAGCCTTGTTTGGTTTTGTACCCAGTGGCT 4328782 31 100.0 35 ............................... AGAAAATAGTTTGAAAAGGGGCTTGACAGCCGTCA 4328848 31 100.0 34 ............................... GTCATCCTCATACAACTCAGCCTGCAAGTGCCTC 4328913 31 100.0 34 ............................... ACCACACTGCCTCATCAATACAAGATCCCCGTCG 4328978 31 100.0 34 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGC 4329043 31 100.0 35 ............................... AAACACACCAAGATTTTGTGCACCCTGGAACCAAC 4329109 31 100.0 35 ............................... ACCATGAACAACCAAGTATTCGCCAACGCCACCCA 4329175 31 100.0 33 ............................... CCATTTACAGACAGGCCTGGGGGCGAGGTTGCA 4329239 31 100.0 35 ............................... ATAATCAGAATAGCCCCGGCGTTATAAATGGTGTG 4329305 31 100.0 34 ............................... CCGATCTTAAACCCGCCAATATAGTTGTTGGCAT 4329370 31 100.0 33 ............................... GGGATCGATTTGCCGGGCCTGCTCTTGCTGCGC 4329434 31 100.0 34 ............................... GGCCTCTAGTATCTTCTGTCCCCGGGCGGTGCTG 4329499 31 100.0 34 ............................... TGCGCCGCGTGTTTAACAAAATTACTGAGAGGAG 4329564 31 100.0 36 ............................... ATACAACCGCCGATTTGCTACGCTGGCTCGGCGGTC 4329631 31 100.0 34 ............................... TACAAGTACGCGCCTGCGCGCGCAGCGGCGCCGG 4329696 31 100.0 35 ............................... TGTAGCGCGGCGTTCTCTGCGTCGGTCGCTGCTGC 4329762 31 100.0 35 ............................... CAGGCCTCTGCCGGGCGTTGGAATGACCGTTCGGC 4329828 31 100.0 34 ............................... ATGAAGTCCGGCATGGGCAATAGGCTCAGCACGT 4329893 31 100.0 35 ............................... TTGCACCAGCGCGTACACGCTGTATTCGCTACCCG 4329959 31 100.0 36 ............................... CGCTTCTCCGGATCAATAGGTCTGGCGGAGTAGAAA 4330026 31 100.0 35 ............................... AGGAAACGGTCGCCATTCGGCAGGCTGCGGCGCAG 4330092 31 100.0 34 ............................... AGGCCACGGATCAGGCGGTTATTCATGTACGAGG 4330157 31 100.0 35 ............................... TTCAGCGCTGCGGACTCCATCACCAAGATGTGGTC 4330223 31 100.0 34 ............................... ACAGTGGCTGTTAGCTCCAGGACTGTGCTTGCAG 4330288 31 100.0 36 ............................... CGCAATATCCGAGACGGTGTAGTTGTGGATAGACGA 4330355 31 100.0 36 ............................... ATGGAGGAGGCAGGCCTGCATGGGCTGCAATTGGAC 4330422 31 100.0 34 ............................... CTCAGACCGCTTTTTGAGCGTGTCACTGTACAGC 4330487 31 100.0 35 ............................... CCAGTTTGCAGGCTTTTGGCCTGACTTGCGCTGGC 4330553 31 100.0 33 ............................... ACCGCAGCCCGGTAGGCCCACTATGTTGTCGGC 4330617 31 100.0 36 ............................... TTCTCTATAGGTGCCTCACCCCTCGAACGTCGGCGA 4330684 31 100.0 35 ............................... TACGAAGTGACGCGCGTACCGTCCGCACGCTCCGC 4330750 31 100.0 34 ............................... GGGCAGAACAAGGGTGGCCGCGACGCGCTCTATG 4330815 31 100.0 34 ............................... GCGTGCACGCAGGATGAGTCGGGTAAGTGGTGTA 4330880 31 100.0 35 ............................... TCGCAACGCCCGCCGCTGGTACTTCGGTCAATCTT 4330946 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 4331012 31 100.0 34 ............................... GCCAAGAAGACGGACACCACGCACGTTATCGCGC 4331077 31 100.0 35 ............................... TTGTGGGACACGGCAGATATGGAGATGTGGGAAAG 4331143 31 100.0 34 ............................... AGAACATGAGTGTCCAAACGCCTGACGCGCAGAC 4331208 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 4331273 31 100.0 34 ............................... CCCTTGGTGCCTATTGTGCCTAAATCTAGGCACA 4331338 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 4331405 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 4331471 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 4331538 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 4331604 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 4331672 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 4331737 31 100.0 34 ............................... GCGCTTGCCCAAGCCTGACATTTCGCACAACTCC 4331802 31 100.0 34 ............................... CACGCGCTATAGCGGCCGTAGTTGCTACGTCCGG 4331867 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 4331933 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 4331998 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 4332064 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 4332130 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 4332197 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 4332262 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 4332327 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 4332394 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 4332459 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCAGCGCAGGCTGGCC 4332524 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 76 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //