Array 1 407802-407347 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYGA01000002.1 Murinocardiopsis flavida strain DSM 45312 Ga0181034_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 407801 28 100.0 33 ............................ GTACGGCGACGTCGGGTTGCGCGGGCTGTACTT 407740 28 100.0 33 ............................ GCCTCCCCCCGATGGGTCAAGGGAGAGCTTCGC 407679 28 100.0 33 ............................ TGCGCAGGTTGGGGCGCTGGATCTTGATCAGGT 407618 28 100.0 33 ............................ GATTCTTTGTGGGACCACAGAACACGAGAGGGG 407557 28 100.0 33 ............................ TGCGCGCGCCATGGCGGTCTACCTCGCCGCGCA 407496 28 100.0 33 ............................ GAAGGACCGGGCCGAACTGGTGGCGCTGCTGCG 407435 28 100.0 33 ............................ GGAGCTGGCCAGCGCCTATGGGGTGGCTCCGGG 407374 28 89.3 0 .........................GGG | ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.7 33 CCAAGCCCCGCACACGCGGGGGTGAACC # Left flank : CGCACAAAATGGCAGGTCAGCAACTCGCGCGCGGCACCCCGCCACCAAAAGGAACATACCCCGCCAAACACCCTCCGTGGGTGCGGCTCTGCGCAGGTAGCCGTGCTTTTCGCTGCCAGGGACGCGGCTACGCGCGGGCGGCCCGCGGAACCCCCGCAGGGGCCAAGGAGAACCCCGACTTCGACCGCCCGCCCCGGCCGATCCAGCCGGGGGCATCGCTCCTTGCCGCCTTTGCTGCTGCTTTTTCCACCAGAAACCGGGCGCCGACAGCGAACAAGGCCGCCCAGCGAACCGAGATCGCCTTCCGGTGGTGGGAGTGTGCGTGGTTCACTCGGGAGGCCGTGTCCGTGAATAGGGAGAGGTCTTTCCTTCTCGCGTTGCTCGATCGTGGTTGGGTCACGATGGAGCATGCCGTTCGGTTGAGTTAGCGAGGCGGGATGGATGGCCATGAACCGAAATAACATTTCAATAACGCGCCGCAAAGTGCCAGGTCATTAGCT # Right flank : CGGTTAGCCGGTGCGGGGGGCGGGTGCTGCCTGGGGCGGCTCGGTGGTGGTTTTGAAGGCGTTGAGGATGCGGGTGCGGACGGCGGTGGGGCCGATGGGCAGGGTGGCGGCGATTTCTCGGTAGCTCTCGCCGTTGGTGTGGCGGGTGAGGAGTTCGGTGTCGGTGGTGCCGATGTCGCGGCGGTTGCGGGGCGCCCGTCCCGGACTCGGGGTGGCGGGTGTCCCGTCGCCGGAAGTCTGGGTGCGGTGGGTGCGTTTGCGGGTGCGTTGGCGGGCGGTGGTGGTGACGTGTTTGGGCCGGTCGCGCCCGGTGCGGACGTCGTTGCCCCACGCTCTCGTGGGGGTTTCGCCTTCCAGCCACAGCGCGGTGAAGGCGCGCCGTGCCCGCGAGATCAGCGAGTAGAAGCTGGACACCGGCAGGCCCAGGGATTCCGCCGCCGCAGCGTAGTCCCCGTGGTCATACAGGGCGCGGATGAGTTCCTGGTTGCGGGGGGTCAGGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCACACGCGGGGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 25252-24917 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYGA01000019.1 Murinocardiopsis flavida strain DSM 45312 Ga0181034_119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 25251 30 73.3 31 CCCG..A.AT.A.................. GCGGCCTCAGTTGCGATCGGCACACCGGATT 25190 30 100.0 31 .............................. GAGCACACCATCACCGAGGTAGAGGTAGAGG 25129 30 100.0 31 .............................. TCGGAGGCCGCGCGTTCCATCCGCAGCGTGC 25068 30 100.0 31 .............................. GCGAAGGGGAATCGCCCTGGCGGGTCTACAC 25007 30 100.0 31 .............................. CCCTCGTGCATGGGTCGACCACGTGCGCGAC 24946 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 6 30 95.5 31 GTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GCGAGAGCGGTGTGTTCGACGGTATCGGCGTTCCCGGCGCCGGCCCCGAGGACGAGGGTTCGCAGTGAAGGGCCGGGTGGCCGGATCTGTACACGTGCGCACCGCACGGCGGGACCCGAAGATCGGGGGCCGTAGGGACGAGACGCGGTGGAGCCCAAGGGGCCCCTACTCGCCGACCAGCTTGCAGCCCCCGATCTCCCGCCGTGCGCCGCTCCCGCGCCCAGATCCGTCCACCCTCCCCAGCGCGGGACCGCCCCGGCACGGCATCGAGCCGCACCGTGCCGGAGCCTGCCCGCCGCTGCACACCCGCATCAGCCCAGCCCACCGGCCCCGGATCCGGCCCGCACGTGGCCCGTAACGGACGAGTACGGCCGTCTACGGGTGCCCACGGATGCGACACCAGCAGGACCACACCGCCCTCGAATCCGCAGGACCGCAGGTCAGCGGCATAGTGGCTGACATGCGAAAGGGCGACGATCACGCGGACCGCCGCCCCTTGC # Right flank : CGAGCCTGCGCGACCGGTACCGCCGACTTGCGTGCTCCCCGCGCGCGGGGGTGGCTGGGGTGGTTTGTTGGGTGGGTTGGGCTTCGTGGGGGCGCGATGGGGTGAGTGGGTGGCCTGACCTCGCACGGGTTGGTCGTGTGGGGCGTGGTTACCATGGCGCTTATGACCAGCGAATCCCGTGCGGTGGCGCGGCGCCGACGCGAGCAGCTTCGCGACTTCCTGCGGACCCGGCGGGCGCGGCTCACGCCCGAGGACGTCGGCATGCCCGCCGGCGGGCGTCGGCGGACGCCGGGGTTGCGCCGTGAGGAGGTCGCCGCCCTGGCCGGGGTCGGGGTGTCCTGGTACACCTGGCTTGAGCAGGGACGCGACATCAACGTCTCGGTCGAGGTGCTCGACGCGATCAGCGGGACTCTGCGCCTCAGCGACGCCGAGCGCGCGCACATGTACGTGCTCGCCGGTCTCAACCCGCCGCGATCTGGCGCGGTGCGCGATGCCACGGT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33473-33310 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYGA01000019.1 Murinocardiopsis flavida strain DSM 45312 Ga0181034_119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 33472 30 96.7 31 .............................T GCACGCACCCGAGAACCGCCCCCAGCAGGGT 33411 30 100.0 42 .............................. ATGACCATCCGCTTGCCGTCTCGCTGCGTCGGTCTGCCCGGT 33339 30 86.7 0 ........................TGT..C | ========== ====== ====== ====== ============================== ========================================== ================== 3 30 94.5 37 GTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : ACCCTCCGCGGGTGGCGCTATGCGCAGATAGCAGTGCTTTCCGCTACGCAGGGACGCGGGTACGCGTGGGAGGCCCCAAGGAACGCCGCCTTCGACAGCGCGCCCCGGCCCACCACCGGCCTTCGCTGCCCCGTCGCCCACCCCGACCCCCGCACACCTCAGCCGAAACAACCGAGCCCGGCCCCTGCCGCCGTTGGAGCCGCTTTTCCCCACCGTGCACCCCGCTCGGTACAACCGACGCCCGGGCCCTGCTCACCGTCGGTGCTGCTTTTTTGGGAACCGGATGCCGACAGCGGACAAGGCCGCCCTGCGAGCCGGAGTCGCCTCCTAGGACGGCCGGTATACGTACCACCCTGGGATTCTGCGCTTTCCCAGAAAAGTGAAGCCCTCGGTTCCTTGTGGTTGTTCGGGCGATTTATGTGGAATAGATTCGCCTTTCCGTTTTTCGAGAAGTGGTCAGAATCGGGGGTACCACGCGGTAACCTTCGAGGTCAGCAAGA # Right flank : TTCAGGTGTCATGGCCGTCTGACCTGGTGTTTTCCTCGGTTTCAGCGTCGTTTTCGAGGAGTTGGCCCGTGACAGGCCCGATCTCGGAAAGTGCCTGGTCAATGATCTTGTTGGAGGCGTGCGTCTGGGAGGTGAACCAGTGCGTATAGGTCGTCAGCAGGACCTCTACCGAGTGCCCGAGCCGGTAGGCCACATCGGGCGCGGGAACGCCGAGGTTGATCAGCAGGGACGCGCACGCGTGGCGCAGGTCGTAGGGTCGCTCTGCCAGGCGTGCGGCCCGCTCAGCGTCGGTGAGGACCGCAGCGCGCGCCCGCTTCCACGCGCGCCGGTACACCTTGCCCGGCAACGTCGCGAAGGCGTCGGTCGCGCTCAGGTGCCAGAAGAGGCGCCCGTCCGGCGCGGTACCGAATTCCGCCAGGTGCCAGCGCAGCACGGCGACGGCTTCGGGGGGAAGCGGGATCCGGCGCACGTCCCCGGTCGCGCGCTGTTTCAGTTCGCGT # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 126-1130 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYGA01000024.1 Murinocardiopsis flavida strain DSM 45312 Ga0181034_124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126 29 100.0 32 ............................. GCGAACGGTCGCAGTGATGCGGGCTGATCATG 187 29 100.0 32 ............................. TACATGCAGGACCTGAAGACCAACTGAATGAA 248 29 100.0 32 ............................. TCCCCCGTGTCCGCCGACGCTTCCCGGACCCT 309 29 100.0 32 ............................. CGCTGCGCGAAGCCACCGCCGAGCAGGTACGC 370 29 100.0 32 ............................. GGGTTCACGCAGTCGGCGTTCTGGTCGGCAGA 431 29 100.0 32 ............................. ACCTCGGCCGTGGGGAACTCCCGGCCGACACG 492 29 100.0 32 ............................. CCGTCGTCGCGGGCACGCAGGAAGTCCTTGCG 553 29 100.0 32 ............................. CATGGTGTACCAACTGCGGCCCTATCGCTATC 614 29 100.0 32 ............................. CCGCTTTGGGTTTTGGCTTGATTAGGGCTCTG 675 29 100.0 32 ............................. ACCACCACCGCTACCAACCTCGCCTGGTGCAT 736 29 100.0 32 ............................. TCCGTCGTCTCACGGGGAGCGGTCGCCGCCCG 797 29 96.6 32 ...........A................. GTGAAACAGGCAGATGTGCAAGATTTGGTGAA 858 29 100.0 32 ............................. GACGGGATGACGATGGCGAGGCTGTAGCCGAG 919 29 96.6 32 ..A.......................... AAGGTCAGGGCGGCGCGCAGCCACTCGGGTAC 980 29 96.6 32 ...T......................... AGTTACACGGTGGGCCGGCTCGCCGACTTCTG 1041 29 96.6 32 ...T......................... CAGCACCTGAGCCACCTGGAACAGCTCCTCAC 1102 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.0 32 CTGCTCTCCACGCGGGTGGAGGTGAACCG # Left flank : CCGCCCGCGGAGTTCGAGGCCGATCACTACCAGCGGGAGTTCGGGTCAGCAGAGGATAGAGCGTTGGTTCCGAGCCTCTAAAGAACCCGGCACGGAACACGGTGCTGCGCAACACCCTGACCACGC # Right flank : GAGGACCGGTGGTGGTCCGTTTTCACCCGACGATCAGCCGTGACCCAGGTCTCCCACAGCAAGGTAACCGATGTAGGTTTATCCGGGGCCTCGGCATGGAAGTGCACGTCACCGTTAATCACCCCGGCCTGCACGCCGTAGTGGGAACCTGAAACCGTGTTTGTCACGTGCAGACCGCTGTCTTCGATACCCATATCGCGGAATAGTAGATGGTGTCTCTGGCGGCGAGTGTCGCGACTGCTACGGGGAGTAGCAATACGGGGTTCGCCAGATCGTCCGGCACTCCCTGCAAAGTCCTCATCGCTCCTACGAGGAACTGCAACTCGTTCTCGTATTCGACGAACCCGACTGCGGGCAATCCTTATCGTTCCTACGAGGTGCAGCAATGGCAGCAGGCGGGCGGGGCCATCCTAGGTGTCCGTATAGCTCCCACGAGGGGAAATCGAGACCGGTCAAGGGGGTGCACACGCGCCGTGCCGTCCCGGCTGAGTCCCGTACCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCTCCACGCGGGTGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCTCCGCGCGAGCGGAGGTGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 104295-104505 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYGA01000024.1 Murinocardiopsis flavida strain DSM 45312 Ga0181034_124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 104295 28 100.0 33 ............................ GTTGAGCTTCTTCGGGTTCTTGGCGACATCGGC 104356 28 100.0 33 ............................ GTAGAACTGCCGCTCCGGCCGGGCCCTCATTCC 104417 28 100.0 33 ............................ CCAGGCGAGCGCGGCCGTCTCGTCGGTGAAGCG 104478 28 82.1 0 ..............C.........GGGG | ========== ====== ====== ====== ============================ ================================= ================== 4 28 95.5 33 CCAAGCCCCGCGCATGCGGGGGTGAACC # Left flank : TCCGCGTGCTGGACATGATCTTGGCGCGGGGCCCGAATCAGCGCCCCTCCGCCGCGAATCGCGCTGCCGAAAGGAACATAAACCCCGAATCACCCTCCATGGGGGCGGCTCTGCGCAGGTAGCCGTGCTTTTCGCTGCCGGGGGCGCGGCTACGCGCGGGCGACCCCGGGGTAACCCCGCGGGGGCCAAGGGAAACCCGGCCGATCCAGCCGAGCCTCGCCCCTGTCGCCTTTGGTGCTGCTCTTCCCACCAGAAACCGGGCGTCGACAGCGGACAAGGCCGCCCTGCGAACCGAGATCGCCTTCCGGTGGTGGGAGTGTGCGTGGTTCACTCGGGAGGCCGTGTCCGTGAATTGGCAGAGGTCTTTCCTTCTCGCGTTGCTCGATCGTGGCTGGGTCACGATGGAGCACGCCGTTCGGTTGAGGTAGCGGGATGGGATGGATGGCGATGGGCCGACATCACATTTCAATAACGCGCCACAAAGTGCCAGGTCATTAACT # Right flank : TGGTTATCCGGTGCGGGGGGCGGGTGCTGCCTGGGGCGGCTCGGTGGTGGTTTTGAAGGCGTTGAGGATGCGGGTGCGTACGGCGGTGGGGCCGATGGGCAGGGTGGCGGCGATTTCTCGGTAGCTCTCGCCGTTGGTGTGGCGGGTGAGGAGTTCGGTGTCGGTGGTGCCGAT # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCGCATGCGGGGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 56017-57132 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYGA01000031.1 Murinocardiopsis flavida strain DSM 45312 Ga0181034_131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 56017 37 100.0 35 ..................................... GTCCACGGTGACCGCGTCGTTGACGCGCATCCGCC 56089 37 100.0 35 ..................................... CAGGACCTCTACGGCTGGGCGGGGCATCTACGCTG 56161 37 100.0 35 ..................................... CCTCCTGCCTGGTGGCGCGGCGCGCGGGGTTCCGG 56233 37 100.0 35 ..................................... CGCCTCGGTCGGCGGTACCGGGGCGGGTGCGGCGG 56305 37 100.0 34 ..................................... TACCGTGTACACGGTAGAAAGCCCGGAGGGTCCC 56376 37 100.0 34 ..................................... CAGGGGCTGCATGCGCGCCAGGTCCGGGGCCGTG 56447 37 100.0 36 ..................................... GTGGCCACCGACTCGTGACGGCCTCGGGGGTGCCGC 56520 37 100.0 35 ..................................... ACCCCGACCGGAGAGCGGGTCGCGGCGGCCACCGA 56592 37 100.0 35 ..................................... GTCCTTCGGGTAGTCCTTCAGGGACAGGGTACGGA 56664 37 100.0 35 ..................................... TTCGCTGGTCAAACGGTGACGTAGGTACGCCAGGG 56736 37 100.0 35 ..................................... GTCATCTCGTCCTCCTGGAGTGCCGTGCTGATAAC 56808 37 100.0 35 ..................................... CTGGACGACATGGCCGTGATCGTCGGCCGTGACGC 56880 37 100.0 35 ..................................... AAGGTGGGGTGGCGGCGCCGGGTGATGGTGGAGAC 56952 37 100.0 35 ..................................... CCCGACCACGCCGTGCGCCCGCCGCGGCGCACCAC 57024 37 100.0 35 ..................................... CAGTTCCCGGACGCGCGCCACCAGTGCGGGCACGT 57096 37 89.2 0 .........A......................T.GG. | ========== ====== ====== ====== ===================================== ==================================== ================== 16 37 99.3 35 GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : GAGCCTCGGAGACCGAAGAGGCGAATCCGAGCTCAGCGTTGACGATCGAGAAGCTGTGAGCACCACCGTGTCAAGGTAGGCCAGGTGTACCAGCGAAGACGGGCCGACGCGGGGTCTGCGGAGCGGTTTGAGCTTTCTCTGTGGCGAGGTGCGTACGCTACGCGCATGGTGCGTCTTTACAGTTCTTTCCTCTGTCTTGGATCTGAGGGAGGATGCAACCACCAAGGTTCTCGAGTGCAGTTGTCGCTGCGAGCCTTGCATCTGAAAAGTCTGTGTCCTCTGCTAGTGCTTTGCTTGGCAGGCAGGGGTCGGCAACGGTCCTGTGCAACAGACTCGATTGAAGCTTGTCCGCTTGGTTGGGAACCGGAAGTGGTCAGAGAAACCCGGGGCGGTACCGAACGGACTATGGGGGTCTCCCTCCCGAATGTCCGGATTGCTGCTCTGTGTTTGTTGATATGGAGAGGTCGTTTTCCCACTTCGCGGGCCGTGGCGGTCACCCT # Right flank : CACCACCGCCTACCAGATGACTGTGGTGCCCAGGCGGACCTGGTGCGGATGGCGGTGGAGACCTTAGTCCCAGCGGTGGGGGCGGCGTCGACCGGCTGAACGCCGTAGCGCCCGTCGACGATAGGCTGGGATCGCTGCTCCCAGGAGGGCCGACGGCATACGGCGCGGCACCTGACCACACTGAACGCCGGTGCGTCAGATTGTTGTTACGAGGGGTGAACGGTGATATCGGATCAACCAGAACTCGCGCTCGACCGCATCGAGTGCGCCGCTCGCACCCTGGGTGCGGGTGGTCTGGTCGCGTTCCCCACCGAGACCGTGTACGGGCTCGGCGCCGATGCCGAGAACGTCGGCGCTGTGGAGCGTGTCTTCGCGGTGAAGGGGCGGCCCACGACGCATCCGCTGATCGTGCACCTGGGCGGCGCGCATCAGCTCGCCGAGTGGGCGGCCGACGTGCCCGACACGGCGCACCTCATCGCCGAACGCTTCTGGCCGGGTCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 150731-149942 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYGA01000004.1 Murinocardiopsis flavida strain DSM 45312 Ga0181034_104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================================================================= ================== 150730 28 72.4 183 ..G.C......C.-...CC...C.C.... CGGGATTCGCCCCTCGGCCCGCCCGCAACGCGCACCTTCTGCGGCGATGGCGAGTCCCGTGTTGCTCGACGTGGTGCGGCGGTGGTGGTGCATGCTGTTCAATCGCAGCAACGGGGAGAGAGAGTCGGCCGAACCCGCACATCACATTTCAATAACACGCTACAAAGTCCCAGGTCATTAACT 150519 29 100.0 32 ............................. GAGCAGGCCGACTGGCGCCTGCGGGACGCCCA 150458 29 100.0 32 ............................. CGCTGTCCGCCGAGACCGGCCCGCTGCACCTG 150397 29 100.0 32 ............................. ACGATCGTGGGGTCGCTGTCGCCGGTCGGCGA 150336 29 100.0 32 ............................. ACGCGCACGGAATCGCCCCTGAATGATCCCGT 150275 29 100.0 32 ............................. ATCCACACCTGCGGGTCGCCGCCCGGGTCGGG 150214 29 100.0 32 ............................. TCCACCGAACTGCTGGAGGACGGGGTCGCCGA 150153 29 100.0 32 ............................. AGGCTACTCTCTTCCGAGAGCCGGAATACTCC 150092 29 100.0 32 ............................. GGGCTTTCACCGCCTCCGGCGGGTCCGTGAAG 150031 29 96.6 32 ............................T CCACGAGATGGCGGTACCCCCGGTCCTGGAGC 149970 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================================================================================================================================================================= ================== 11 29 97.2 47 CCAAGCCCCGCGCAGGCGGGGGTGGACCG # Left flank : CCGGCTCGACGGCGGGGCCCGGCGCACCGCGCCCTCAGCGGACGGCCTGTACCCGCTGGGCCTGGCGGTGCTGGCCCGCAACGTCGACGGCCTCGGCCAGGGCTGCTACCTCCAGCACCCCTTCGCCGGGCTGGAACCCGTCGAGGCGGGCCCCGGCCCGGGGCGGCGCGTCGCCGAGGCCGCGGTCGGCGAGCAGCCCTGGCTGTTCGAGGCGCCCGCGATCGTCGTGGTCTCCGGCGACCTGCCCGCGATGCTGGAGCACTTCGCCGACCAGCAGGACGACGGCCGCCGCGGCGAGCGCTACCTCGCGATGGAGGCCGGCTGCGCCGCGCACAACGCCGCGCTGTACGCCGCTGCCCTGGGCCTGGGGTCGGTGCTGGTCGGCGGGTTCGACGACGCGCTGCTGTCCGCGGCACTGGAGGGGGCGCTGGAACCCGGGCACGTGCCGCTCGCCCTGCTGGCCGTGGGCCACCCGCACACGGGCTGAGCAGCCGCGCCCG # Right flank : AAGCGACTTCACTAGCCGGTGCGACCGAGGCCAGGAGCTCCGCCCGCCGTTGGTGCCGCCCTTACTGCCAGGTCGGCCGGGTACCGCTTGCGGACAGGGGCCAGCAACAGACCACGCGGCCACGCGCTCCCGATCGCGGAGTCCGGCCGCACGCTCTGCCGCCGCTCCCAGTGCTCCCGCTGCTCCCGCTGCTCCCCTGCTGCACCCGCGAGGCGAGTGTGTGCACGGCGTGACCTGTGCGAAACCCGGTTGACGTGCGCGGCACCCGCGCGCGAGGCTCGCCGCCGGACACGAGCAACGTGGAGAACGGAGAAACGACCATGGCGAGCGCCGCGCACACCGCACCCGACGGGATCCGGGAGTTTCCCATCGGCGCCCCCGGCGACGGGCCCTACGGGGTCACGGCCGGACCGGACGGGGCGATGTGGTGCACCCTGGTGCACAGCGGGGGTATCGGCCGCCTGGAGACCGACGGGAGCCACCGCGTCCACTCCTTGGAC # Questionable array : NO Score: 4.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-1.49, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCGCAGGCGGGGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCAGGCGGGGGTGGACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22150-21816 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYGA01000028.1 Murinocardiopsis flavida strain DSM 45312 Ga0181034_128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22149 29 100.0 32 ............................. TTGGTGATCTCCGCGTTGCGCGGCACCTCCGA 22088 29 100.0 32 ............................. CGGTACCGCATCCGCGGACTGACCCGGGCGCA 22027 29 96.6 31 .................A........... GCTACCCCCACCAGCGCGAACTCCAGCGCAT T [22001] 21966 29 100.0 32 ............................. AACCTGCCCTACTTCGACGCCGCCGGCAGACC 21905 29 93.1 32 ............GG............... CAGGCCGGGTCGTCGGCGGCGTAGGCGGGCGC 21844 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 CTGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : CCCTTCGCCGCCGTTGGTGCCGCTGTTCTCCACCGCGCACCCGGTTCGACTCCGCCGAGGCCCGGAGCCCGCCCGCCGTTGCTGCGGGTTGTTGTCACAGATCACCTGCACGCGGGGCGGGCGCAGGCGCCCGGGGGAGGGCGCCCGGGGGGCGTCCCAAGGCGAGAGTCCGGGGCAAGGGCGTCCGTGACCCCAGGGGACAGGAGCCAGGCTGCCCGGCAGCCTTGCCCAGGTCCGCTGGGGGCAAGGACGCTCTCGGCACTCACCCCCGGTATGAAGCCGAGGCCCAAAGGCCGAAACCCGCCCTCAAAGCCAACGGCCACCGAGCGGCGCTAAGCACCACAGCCCGGTCGGAGCACCGTCCGGCGCTTCTCTGGTGGATAGGCTCCTCAGTTTTCATGCCCGTTCAGGCGAGTAGCGTGGAATTGGTTCGCTTTTCCCTATTTTGAGAAGTGGTCAGAATCAGGGGTATGGCGCGGTAACGTTCGAGGTCAACAAGA # Right flank : GTGACACGCCGCCTCCAACCGGTCCGCTGACCGGGGCGCGTCTCACCGCCGACGCTGGGGCACCGCGGTCACGCCCGCCCGCGCGGATTCGCGCCGTCGAATGAGCCCGTGATGGCGGCGTGGAGTTCGGCGACCTCCTGCTGGAGGGCGGCACGCTCCTCGGCCAAGTGGGCGGGAATCGCCGGGACGGCCTGTTGGGCCAGGCCCACCGCGGCCAGTGCCGACTGCGGGTCGCGCGCACGCAGCCACGACGCCGCCTCGCCGCACCGGGAGCGGACCGCGGTGGGCACGTCGCCGAGCGCCCAGAAGCCCTGCGCCGCCTCGCGGTACATCGCGGCCGAATCGGCGTACCGGCCCAGTTCGGCGAGCACGACGCCGACCTTGCCCTGCCCGACCGCGACCACCGGGGCGTTGCCGACCTCCCCGGCGTCCTCGACCAGCCGGACGTACTGCTCCAGCGCCGCCTCGGTCTCGCCGATCTCGTGGTGGCTGTCGGCGAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 76241-76636 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYGA01000028.1 Murinocardiopsis flavida strain DSM 45312 Ga0181034_128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76241 29 100.0 32 ............................. TACGGCGAGGCCGGGTTGCGCGGGCTGTAGCG 76302 29 100.0 32 ............................. ATGTACGAGCTCATCACCGGGCAGAAGGCCAC 76363 29 96.6 33 ..................A.......... ACCCGCCGACCGGCCCGGACCCCTACAGGATGC 76425 29 100.0 32 ............................. TCGGCCATGTCGGCGATCACGAGGCTGGTGCC 76486 29 93.1 32 ...........GT................ GCAACGTGATCCGCACCCCGAGCGGTAGCGTG 76547 29 93.1 32 ...........G..............A.. GCCGAGCGCGAGGCCGAGGCCACCCAGATCTA 76608 29 96.6 0 ...........G................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 97.1 32 CCAAGCCCCGCACACGCGGGGGTGAACCG # Left flank : TGTGAGGGCGAGGAAAGCCGCCGCGCCCGCAAGTTCGACGCCGACCACGGTGAGGAGTGACCAGGTGGCGACCGGCCCGCCGATCCCCGCATCCAATGCGTATCCGGTGATCCTCATGCTCGCGCCGGTGCTGAACTCTCCACGGCGCGCAGCGCAACACCATCGAAGGAGCCGTCTCAGGTCCGGCCGGGGCCTGGCCCCCACCCGTCTTCGGCACTGCCCTTTTCCACCGGGAGCCGGGACCGACAGCGGACATGGCCGCGCTGCGAACCGGAGTCGCCGTCCGGCGGCGGGCTGTACGTGGTTCACTCGACGGACTCTGGCAGCCGCGTGCCGCAGGCGGCGTCCGGGGATGCGAAGACGTCTTTCTGTTTCGCGTTGCTCGATGTGGTTGGGCGGTGATGGAACATGCCGTTCTATTGAGACAACGGGGTGAGGTGGGCGGCCATGGACTTGCATCACATTTCAATAACGCGCCACAAACCACCAGGTCATTAACT # Right flank : GGCGGGGTCTACCTGTCTGTCTCGGGTCTACCGTGCAGGTCGGGACGGCTCTACTTCTGTAGGTGGGGGCCTACCGGGTAGACTCCCCGCGCCTATAGGTAGACCCCGGGCAGACGCCCCTTAGACGCACCGTAGGCAGGGATGTAAGACCGATACCGGTATCAGCTACGGCGATACCAGACCGGCGGCTCGCCTACAGCGCGGGCCGGGCTTCGCGGGCCTCGTGCATCCACCGCAGCGACGGCGTCCGCAGTGCCTCCTCGGCGAGCCGCTTGCCCGACGCGGTCTTCAGCGAGGCGAGCGACGAGTCGATCCACGCCTGGGTGTCGGTGCCCTGCTCGCGGTACTCCGCGGCCTGCATAAGGCACTCCAGCTTGTCCGCGTCCTTCGCGCACGCGGCTGCCGCCGACTCCTTCGCCTCGTACTCGCCGACCGCGTCGCCGATGACCTCGGCCAGCCCTTCGGGGAGTCCCGCAGTCTGGTCGGCGGTCACCTCGGTG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCACACGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 82067-82216 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYGA01000028.1 Murinocardiopsis flavida strain DSM 45312 Ga0181034_128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 82067 28 100.0 33 ............................ CTATCTGACCGGGCTCTTTGCCACCGAGGACGT 82128 28 100.0 33 ............................ GATCTCATCGATGCGCTCCCAGCGCCGCGCCTC 82189 28 82.1 0 .....................A..GGGG | ========== ====== ====== ====== ============================ ================================= ================== 3 28 94.0 34 CCAAGCCCCGCGCACGCGGGGGTGAACC # Left flank : GCCACTTGCGCATGCATGACACTGCCAGCTACTGGGACCGCTACGCCCAAGGAATGAAGGAACAGACCCCGCAGGAGGCGGTCAAGAACGCCTTCGGCTGGTGCCAGTACCCCGGCCACGGGCCCGGCGACGAACTCCTCGGCGACCCCATGAGCACATTGGAACTGGGATTCGGACACGGCAACGCCGTCGCCGCCCTCGCGGCCAAAGGCATCGACGCAACCGGCATCGACGTCTCCCCCGCGCAGTACGAACAGGCCCTCGCACGGTGGGGGCACCTGACCGGCGCCCACTTCGCCCAGACCGACGCCGCGGACTACCTCGCCAGCGCCGAACGACAGTGGGAAGCCGTCTACTCGATCTGGGGCGCACTGTGGTTCACCGACCCCGACATCCTGCTGCCCCTCATCCGCAACCGGCTGAGACAATTGGGTGAGGTGGGCGACTATGGACACGCATCACATTTCAATAACGCGCCACAAAGTACCAGGTCATTAACT # Right flank : GCGACCGTTCATCGATCACCGAGGCGAGGGGATTGAGGACCAGCCGTTTCGGTGCCACGCCGCGCCGGCACCGGTCCGCCACGGAGGTATGCGAGCTGACCGGCTTGGGACACGGCAATTACAACGGGTAATAACGGAGGTACGATCTCGCCACCCTCACTCCTCTTGGGAGACTGCAATGGGCAAGCGCGGCAAGAAGGAAGAATGCAGCGTGTGCAAAGGCAAGGGCGGCTGGAACGAGACTGACGACGGCAACCGTCGGTGGGTCCAGTGCTGGGGATGCAGCGGGACCGGAGAGGTATGACTCCCGGGCAGGCCGCGGTCGCCGCCGTTCCGCGGGAGCGATTCGTCCCCGACACCATCTACCTGCCCGACCCCAGCACGGGCTGGTTGGTCCCTCTTCACCGCGGCGACGATCCGGGCCGTTGGTATGAGGCCGTGGCGTCCAACGATCCCGTGGTAACCGCCGTAGAGCACGACCCGCGCGTTCCCAAGCACCT # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCGCACGCGGGGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 4 83528-83679 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYGA01000028.1 Murinocardiopsis flavida strain DSM 45312 Ga0181034_128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 83528 30 100.0 31 .............................. ACGTCTACCGGTCCGGCGACTCCTCCCACGA 83589 30 90.0 31 .....................G...C...T TCGCGGTGCCGGGCTCGGCCTTCTCGGGCAC 83650 30 86.7 0 .....................G..A...TG | ========== ====== ====== ====== ============================== =============================== ================== 3 30 92.2 32 GTGCTCCCCGCGCACGCGGGGATGGACCCC # Left flank : CGTGACAAAGATCCCGTTTGCATGGGTCGATCAGGCACGTCCGGGGGCACTGATTGTGGCGCCCTGGGCGCCTGTGTTCCATCCGGCTGCACCTCTCGCCGTGCTGACCGTGGGGACCGGCGTAGCCGAGGGGCGGTTCTCGGGGTCTGCCCCGTTCATGCCGATGCGAGGGCAGCGACTCGACCCGGGTGCCGTCGAGGACGTGCGGGCATGGTGGGAATCGTTGGGGTCGCCGGAGCCCGGCCGGTTCGGGGTCACCGTCGACCGCACGGGGTCGCACGTCTGGCTCGACGTGCCCGGAAACGTCGTGCGCCCGCCATCCCCATGATCATGCCCCGCGATCGGATACCCAGTACCCAGCGCGTCTCCCGCTCCGGGTGAATGGATTCCTTCGTTTTGTTCCTATTCGGATTCTTTGCGCGTTTTGAGTGCGAGTTTCCTCTTTTCGAGAAGTGGTCAGAATCGGGGGTGCGTCGCGGTAGCGTTCGAGGTCAGCAAGA # Right flank : GCCACTGGTGCCACGTTATGGCGCACGAGTCGCCAAGCCCCGCACGCGGGGTGAACCGTAGTCGGTCAGGCGGCGTGTAGGCGACTGGCTACGTCGCTCTCAGCTGACACCGGATGTCGGTCTCGTTCGACACCAGCATCGGATGGTGCGTATCGGATGTCGATGTGAGTCGACACCGAGGAATGATCCCAAGAACCAGTGATGACTTATATAAGTCAATACTGGTATTATCTTGGATCGTGCACGCGTTCGACATCCTCGGCGACCCGGTGCGCCGTCGCATTCTGGAGCTGCTCGCCGACGGCGAGCAGACCTCTGGCGCGATCACAGACGTGATCCGGGCCGAGTTCGCACTGTCCCAGCCGGCTGTCTCGCAGCATCTGCGCGTTCTGCGTGAGAGCGGGTTCGCGTCGGTCCGGGCCGAGGGGGCTCGCCGTTTCTACGCCGTCGATCCCACGTCGCTGAGCGAGGTTGATGTGTGGTTGGACCGGTTTCGCGGG # Questionable array : NO Score: 3.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 2520-2853 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYGA01000045.1 Murinocardiopsis flavida strain DSM 45312 Ga0181034_145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2520 29 100.0 32 ............................. CCCACGGCGACTCACGAGAACCTGACCCTCGG 2581 29 96.6 32 .......................A..... ATCCGGGTGGTCCTGCCCGCCGGAGGTGCGAC 2642 29 100.0 32 ............................. GAGTTCGCGCGCTTCCACGGGGCTCGCTACGC 2703 29 100.0 32 ............................. TCGGGGAACGCGCGGGGGGCGTCGTTGACCGG 2764 29 96.6 32 .....................A....... TATGAGCAGGTCGACCGCACAGGGCGAAGGTA 2825 29 86.2 0 .T.........GC.G.............. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 CCGCTCTCCACAGGCGTGGAGGTGAACCG # Left flank : CCCCGGCTGCGGAACGATCCGAGCTCGCTCATACGAGTGAGGCCGATGGCGACCCGGCGCACGAAGGGCGGGAGGGGCGTGCGCGGCTTCGGGTAGTCGGAGCGAGGAGCGAGGAGGCTGATGGTGTCGCCATTGAGGTCGCGGGGTCTTTCGAGGCGGTGCCGCAGGTGCAGGTGGAGGCATGGTGTTGGGCGCTGGATAACCGTCGAGAGGACGGTTCGCTTCCCTCGGGCCGCGAGATCGCGGCCCGCTTCGATCACAAGGAGCGCTGGGGTCGGCTGATCAAGCAGTGGGGGCAGCAGGGACGCTTCGATGGCGTAGCGGTGTGACTGCCCTCTGTTGGTGCGGTTAGAAAGGAACGGTGGCCAACTCGTCATCGAGGATTGCGTGGAGCTGTCGGCGTCCGGTCGGGCTGTCCGCCCGTCCAGGGACGGGCGTCAGTGTCAGCGCTGTGCCGAACCGAACGGTATTCTAGCCGTGCATAGTTGCAGGTCGCGAAG # Right flank : GGACGATTCCGCGTTCCGGGGGGTGCCTACCGCTGCCTACTACCCCGTGAAACGAGTCGTGCGAGCTAAGGCAAAGCTCAACTCGCACGATATGTACAAAGGGTCGTGTCCGAGGGGCGAGTCGACCCTTACGTACATGTCCCTGACGCTGTCCGCGGACCTGGCGCTGGACGGGCGGTGACCTGGGATGGGTTCTTCCCGCTGGTCCCGCTGGACGACCATCGCCGCCGTGCTGGTGCTGGCCGTCATCGCGGCCGTCGTCTCGTACAGCCACATGTTCGAGTTGGCCCAGCGCCATGGCGAACCGCCGTGGCGCGCGGCGCTATTCCCGCTGTCGGTCGACGGCATGATCGTCGCCTCCTCCATGGCGCTACTGGCCGATGCAAGGCATGGCCGGCGCGGCGGCCTGCTGCCGTGGACACAGCTCGTCCTCGGCAGTGTCGCGTCGCTTGCGGCGAACATCGCGGTCGCTGACCCAACCCTGTGGTCCCGCGTTATCC # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCTCCACAGGCGTGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 3937-6132 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYGA01000045.1 Murinocardiopsis flavida strain DSM 45312 Ga0181034_145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================ ================== 3937 29 100.0 32 ............................. AAAGACCCCCGGCATTGAGCCGGGGGTCTTCT 3998 29 100.0 32 ............................. CCCACGTCCGCCTCGTCGGGCGCGGAATCACC 4059 29 100.0 32 ............................. GGTGTAGTCACCTCCGCGCCGAGGTGATGTTC 4120 29 100.0 32 ............................. CCGTCGTCGGCGCCGCGGACCTGTTCGACCTG 4181 29 100.0 32 ............................. ATGAAGAACGGCAAAGTCCAACCGTTCCTCGA 4242 29 100.0 32 ............................. TAGCTGGTCGAGAGCTGATACGGCGACCCGTC 4303 29 100.0 32 ............................. CTCGCGCGCGACTCCTCGGCCAAAGACGTGTC 4364 29 100.0 32 ............................. CGGGGTGCTCGCGTCACGCGTGTCTGTCACAT 4425 29 100.0 32 ............................. GCCCCGCATGCTCGCTGTACTCGATTTCGTCG 4486 29 100.0 32 ............................. CTCGCGGCGGCGGAGGAGTCGTGGGAGTCCGC 4547 29 100.0 32 ............................. TACCGGTGCCGGTGCAGGACTGCGACGTGGTG 4608 29 100.0 32 ............................. GGCCAGTTGGAGATCCAGGGCATCACCGGCTG 4669 29 100.0 32 ............................. ACCGCAGCACGCCGCGCTCCGGCGAAGAAGGA 4730 29 100.0 32 ............................. GTCGGGCTGCCGTCGTGACCCCCTTCGAGCGG 4791 29 100.0 32 ............................. CGTTGCCCCAGAGGTTCTTGTGCACGTAGGTG 4852 29 100.0 32 ............................. AGCGTCGGACCCGAATTGCTTCGCTCGCTGGC 4913 29 100.0 32 ............................. GGGCGGTGTCGGTCCAACTGAGCGTGCTGTCG 4974 29 100.0 32 ............................. GGCTTGATCGAGCTGGTGACGATGCCGCTGAT 5035 29 100.0 32 ............................. CGCACCGCCCTCCGCGACCGGTACCGCCGCAT 5096 29 100.0 32 ............................. GCCGCGCTGTCCCAGGTCAAGGGCCTGGGCAC 5157 29 100.0 32 ............................. GCCGTCGACGCCGACCGCTCCCGCGTGGAGCA 5218 29 100.0 32 ............................. AGCAGCGACGTCTTCAATGGCCATCGCTAGAG 5279 29 100.0 32 ............................. GTGGCGAGGCCGCTAGTGCTCATGATCGACTG 5340 29 100.0 32 ............................. TCGGCCGGGCCCCAGATCTTGACCCCGGCGGC 5401 29 96.6 32 ............................A TGCTGACCGGGAACCTGGGCACCTCCTACTCC 5462 29 100.0 64 ............................. CCGGACACGGTGGTGGAGGTGAACCGGTGCGCGCACGCGGCTCATCGGTACCGTTCTCGGACCA 5555 29 100.0 32 ............................. CGCGGAGGTGTTCTCCGGACAGGTCGTACATG 5616 29 100.0 32 ............................. GCCGGGGTCGTGCGCATCACCGCCGACAACTG 5677 29 100.0 32 ............................. GGGACGGGCTGATCTCCGTCGTCAAGCGGCGA 5738 29 100.0 32 ............................. GTCACGGTCATGGCGGTCCTTCCGGGAGGGCG 5799 29 100.0 32 ............................. AACGCCTGCACCATGGACGGGCGCAGCACCGC 5860 29 100.0 32 ............................. CGGTAGTTCGTCGGCCACGGGATCGGGTTCAG 5921 29 100.0 32 ............................. CAGTCCGCCCGCACCCGCTGGCCCGGCGCGGT 5982 29 96.6 32 .........................G... TCCGGCGGCATGGAGATGTCGCTGTACGCTGG 6043 29 100.0 32 ............................. CTCGGTCAATCGGCTCGCAGTGAGATCGCCGC 6104 29 89.7 0 ..........................TGA | ========== ====== ====== ====== ============================= ================================================================ ================== 36 29 99.5 33 CCGCTCTCCACGCCCGTGGAGGTGAACCG # Left flank : CGATCGCACCTGATGAGCAATCGGTTCGCACCGCACAGGTTGAGGCCGCCATGACCGAGTCACCCGAGCAACCGGGGAGCGAAGGCAAGCCCGGCACCGGTGGGGGAACTCGACCGCGGCTTCACGTGGTGGAGGCGCGGACTCAGGGCACGGCAGGGATTACCGCCGAGGGGGCGGATCCTTCCGAGGTGGTACCGCAGGTCCAGTTGGAGGCATGGAGTTGGGCGCTGGACAACCGCCGTGAAGACGGCTCGCTTCGATCACAAGGAGCGCTGGGGGCGGTTGATCAAGCAGTGGGGGAAACGGGGGCGCTTCGATGGCGTGGCGGTGTGAGTGCCCTCTGCGGGGCGCGGCGCAGAGGGGGCGATGGCTGATTCGTCACCGAGGAGCGAGCGGAACTTCCGGAGTCCGGACGTGGCGGCCGCCCGCCCTGGGGCTGGCGTCACCGCTGTACCGAACCGAACGGTATTCTAGCAGTGCAAAGTTGCAGGTCGCGAAGT # Right flank : AAGCACGGTTCGATTCGTAAGAGTGCAGCGCCTTCGCAGGGCGTGATCCTGTAGGTGTTTCGATCGGAACCAGAACTCTTCCCCGCAGAGCCCTGCGATTCTCCTGGCCCATTTGTCACTGCCCACGGTTAAGGTCGGCGAAATCCATCACCAGGGAATGGGGCACGCGTGGACGGATGGGAGAAGGCTGGTCGCCATGAGGTTGATCTGTTGCTGTGGGGCAAGTCGAGAGGACTCGACGGCAGCCAGTACCCACTGATCTGCCACCTGCTCGACGCAGCCGCCGTGATGCGGGTCCTGTGGTGCGAGGTGATATCCGCAGGATTGCGTGCGCAACTTGCTGAGCAAATGGGTGTAACGGAGGAAAACGCTGGCCGACTGTTGGAATTCTGGGCTGGTCTGCATGACATCGGTAAGATCACCCCGGCTTTCCAACGCCAGGTGTGGGTGCCACCCGGTTATCCGCAAGGCCCGGGCGATCTCCCAAGGGGACACGATTT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCTCCACGCCCGTGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 15768-16040 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYGA01000045.1 Murinocardiopsis flavida strain DSM 45312 Ga0181034_145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15768 29 100.0 32 ............................. GCCCATGCGGCGTCGGCGTGCCAGCGGCGCGC 15829 29 100.0 32 ............................. AGACCTCCAGCTCGTAGACGAGGTAATGCCGG 15890 29 100.0 32 ............................. AACCCCGCGCAGACCGTGCGGCGCACACAGCG 15951 29 100.0 32 ............................. GGGGGACCGGCGGCCGGGAACGGACCGGCCGC 16012 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 CTGCTCTCCACGCGGGTGGAGGTGAACCG # Left flank : TCCGGCTGTATCGCCTGATGCCGACCATCGTCCACGATGTCCAACGGCTCCTCGACCCCGAACTGGACGAGGAGGACTCCGAGGTCGCCGACCCGGAGCTCGTGCATCTGTGGGACCCCGATCTCGGCCCTGTCGACGCCGGCGTGAACCACGCCGAGCCGGATTGGTAGGCCCCAGTGCCCAACATGGTCGTCATCTCCACCACCGCGGTCCCCGATCACGTCCGGGGAGCCATCAGCCGCTGGCTCATCGAACCCGCCCCCGGCTTCTACGTGGGAACCGTCTCGGCCAAGGTCCGCGACATGCTGTGGGACGCGGTCAGCGCTTCTGTCGGCGAAGGGGCAGCCGTCTGTGTCCATCCCGCGGAGAACGAACAGCGCTACGTCATCAAGACGGCCGGGCAACGCCGCCGTCGAGTGACCGATCTCGAAGGACTCCAACTCGTCGCATTCATGGGCGAGAACGGTCATGTGCCTTTGTGAAACCGCAGGTCAATTAGT # Right flank : CCCGGTCGGTGTTTCGTGCCGGGTGTGATGGAGGCTCTCAAACCTGGGAAGGATGAGAGACATGCCAGCACCGAGGAAATACCCCGTTGAGCTGCGTGAACGCGCCACCCGCATGGCCATGGAAGCCCGCCGTGACCCGGCCAGCCGCCCCGGGGCGATCGCCCGTACCGGCGACCAACTGGGCATCAACCGCGAAACGCTGCGCACCTGGGTGAACCAGGCCGAGGTCGATGCCGGAGACCGCCCCGGCACCACCACCGACCAGGCCCAACGCCTGGCCGAACTCGAACGCGAGGTGCGCGAACTGCGGCGGGCCAACGCGATCCTGAAGTCCGCATCGGCTTTCTTCGCGGCGGAGCTCGACCGCCCACACACCAGATAGTCGCGTTCATCGATATCCACCAGCAGGAGTTCGGGGTCGAGCCGATCTGCCACGCGTTGCAGGTCGCCCCCTCCACCTACTAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCTCCACGCGGGTGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCTCCGCGCGAGCGGAGGTGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 242438-242588 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYGA01000010.1 Murinocardiopsis flavida strain DSM 45312 Ga0181034_110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242438 29 100.0 32 ............................. ACGGTGGTCGTCGCGATCATCGTCATCGCGTT 242499 29 100.0 32 ............................. GTGGCGTCGAGGCACCCGGCCTTGCCGTTCCA 242560 29 93.1 0 ..............T.............T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 CCAAGCCCCGCGCACGCGGGGGTGAACCG # Left flank : CCTTCCACGCCCCGATCGAGGGCTACATCCAGCGGATGATGTGGGCGGCCGTCGAGGAAGGACTCATCACCGAGGACGCGGCGAACGACCCATTCGGCCCACCCCCGTCCCGACAAGAGCGCACCGCCGTCCTCGATTGCCTCCGCCTGCTCGACGAACAGCCCTGACCTCCAAAGAAACAGCCTCGCCCGCCGCCAACACCGCTCCCACAAGATCCAACCGCCCACACACCCACCCGCCCCGCAGCACCCCGTGACCTCGATCGGCACCCGGAGGCCCAGCAAAGAAGGGGCTCCTCCGGCGAACGGGCGTGCGCGTGGTTCACTCGACAAACTCAGGCAGCCGGTGTCCGCGGATGCGGAGAAGCCCTTCTCTCCCGCGTTGCTCGACGCGGTTCGGCAGCGGTGCAAACCGTTCAATCGCAGCAACAGGGAGAGATCACCAACCAGAGCCGTCCATCACGTTTCAACAACACGCCACAAAGCCCCAGGTCATTAACT # Right flank : GCACGGACTGATGGGCGGAACTGGTGTGCGACTGCGGTGCCACGTTACGGCTGGACGGCGCTGTCGGTCGGGTGTGAATTCCTGCGAGCGTTGATCACGGGTGTGCTGGCGGGGGCCGGTTGTGGTGGGGGCGTGGGTGTGGCCCGCCGGGGTGGGGGTCCCGGCGGGTCATTCCTGGTGTGGGGTGGGTCAGGGCCTGGGGGGTGGCGGCCCGGGGGGATCGGTGGGCGGCGGGCGGGTGCGGGTGCGGTGGAGGTCTTTGCGGGCGCGGCGGTGTTCCTTCTCCAGGTTGTGGGCGCGGCACAGGGGCTGGGCGTTGGCGAG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGCCCCGCGCACGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //