Array 1 1125-1525 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXVJ01000081.1 Staphylococcus argenteus isolate O-10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1125 36 100.0 35 .................................... CTATAATAGTTACTGCTTTTGTAACCGTCCATATC 1196 36 100.0 40 .................................... AAATGCTTATCCATTCTAATCATATTTTCAATTTGTTTAT 1272 36 100.0 36 .................................... TGCCCACTTAATTAATTCATCTAGTCTCATTTCTTT 1344 36 100.0 38 .................................... CATCAACTGACTTTTTAACTGTTTTAGTGAATTCGTCT 1418 36 97.2 36 ......................A............. TTAAAGATCTCAACAATAGCGTCCCATATTTTCTGT 1490 36 86.1 0 .........A.......G....C.....G...A... | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 97.2 37 ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Left flank : TAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAGAATATCAATATTGTTGACTATAAATTGAAAAGCACACGGTTTAACTTAGAAAAAGTTAAAATTCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCATTACCTTTTCTACAATTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAATTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGCAAATTTTATATTTGAACTATTGATTTAATAGGCTTTAAAGAGCTATCT # Right flank : CCTCATCTTGATGATCCCAATTGGCCTGGTTAAAAAGAAATCGATAACCTTTCGTAGAATAGAGAATAAGTATTAAAAATATATTTGGTTTGATAAAATATTCTGCAAAAAAGGGGACAAAAAAATCAAGATTTAAACTGTAATTCATTATCTTTGAAATTAATTGACATTCAATTTCTAAATAAGCAGAGACAAAAATAACTTTCATACAAATAATTTCTTTGTGATTAAGTTGGAATTAGAAAACTAATACTAAACGAATGGAATGTATATTATTGAGGAATTGGATGCAGTGTGGTGCAATTTCGAGAACTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAGTCAAGATATAAAAACAAATATTTTTACCATAACTATATTAGTAAATACTTTATTATTTAGTATACGGATGAAAGCGAAGTGACAGCTAGCAATGCTCCAGATATAGGTATTAGTATTATAAAAGAGCAAGATTACCATTTAGAAAATG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 1 8040-7646 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXVJ01000146.1 Staphylococcus argenteus isolate O-10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 8039 36 100.0 36 .................................... TTAATTGCATTATCAAATGTATATGCTGGATTCCAT 7967 36 100.0 34 .................................... TGTACTTAAGATTTCATCAACTTTCTTTTGTACT 7897 36 100.0 35 .................................... CCGAATTTTGATTCTTTGTTTGTAAATAATGCTCT 7826 36 100.0 36 .................................... TTAAATCTTTGATTGCTCTTAGCTCTAGTTATGTAT 7754 36 100.0 38 .................................... CACGCTGTAGTGAAGTATAGAAACGGCATGAGTACAAT 7680 35 91.7 0 ..............................-...GT | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 98.6 36 GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : CCCAACTGTTACTAATAAAGTATCAAAAATTTCCAATGAATATTTATTATATTTTGGTATATTTATATAATCATTAGAAACAAATTTTAAATTATTCCTCTCAATTAAGCAGCTAGTTTTAGATATATTTAAAGTTCTTAAGACTGATAATTTACTACTGTAAATATATTCACTAGATTTAAACGCGTATCCTGTTCTAATATCAGCTATATTTTTTAATGAATTAATATTCCAATTTAAAGGTATTTCACCTAACTCACTATCAATCATTTCTCCACCATTAGATTTATAAGGAAGAGAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATAAGTAAAATCATCATAATATTTGTCAAAAAAAGTGACATCTCATATAGTAGCGCGGTGTTAGTTGTCACAATTTTTGACAGCCAAAATAATACTTGAACCCTTGTGGTTATGCTATCTATTAAAGTATCT # Right flank : GTAAATTTAATTACACTCTAAAATTCGTGAATTTTTAATGGAATACGCATGGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTAGAAAACCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTACGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 1 15919-16066 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXVJ01000064.1 Staphylococcus argenteus isolate O-10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ===================================== ================== 15919 27 100.0 37 ........................... GTTGATGCGCAGCATCCAACTGTGTTCCTCTTATTCT 15983 27 100.0 30 ........................... TGCGCTTAGCGCAGGCGCTCCTACTTTTCA 16040 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ===================================== ================== 3 27 100.0 34 ACTTTAGTTGTTAGGGGCTCTTATGCA # Left flank : CAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTATCAAATTTTTCATTGGAATTCTCTTATTAAACTTAATTACTATTTTATTTAAAGTACCTGTTGGTTACTTGATTACATTAAATACGCAATCACTCTCTCAAAATGTTGCAGAAAATATCATAAAAGTTTATACAGTACTAACAATCATTTTATTTGTTGTTATTCATGCAATCATTTTAATGGGTATCGTGCAATATTACTTAAAACGTGGTCAAAAAATTACTAAAGATAAAGTAAAATCAGCTGACAAAAACAAAAATGTCGTGACTGAACCAAAAAGTACAAAAGTAGAAAATGAAAAAGTGACAACATCTGTTGAAACAAAAACAGAAAAAGCACAAGATTCATTAAAAGATGAGACTACAAAAACGATTACTTCAGATAAACCAGAAGACAATCAACCAAAATAAAATTTAGAGCCCCTTACA # Right flank : AGTTGATGCGCAGCATCCAACTGTGTTCCTCTTATTCTACTTTAGCTGGTTAGGAACTCCTTTCTAAAATAACTAAGTGCATTGTCTATACATAGTTGGGCAAATTCTATTAGAATAAATATTGTTAAACAGCGACCTCATTAATTAAACGAGAAACTTTAGAAACTGATTAGGAGTAACTACTATAACCATAGGCATCACCTCTTTATTAAGAGATTAGCCACCATCTATTCAAATTGCCCTATAAATATTTGAACATGAACATGTTTAAATATTTATAGTATAAGGTTTTTCATTTCGTTAACAACTCGATAAACAAGGGATAGAATGGTTGTCAGACACTGAATTACGGAATTATTTATTTGTTACAGATGATAAAGATAAACAATAGTACAAACATGATAAAATTGTGCATGTCTAAACAATCAAAAATGTACATTATTAAATTATCATTTCCATTCAACTAAGTGTAGACGATTCAAATAGTGTTAGTGTTGGTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTTTAGTTGTTAGGGGCTCTTATGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //