Array 1 44-234 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEXI01000013.1 Veillonella parvula ACS-068-V-Sch12 contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 44 35 100.0 43 ................................... GAAAGTGAGATTTATCATGACTAAGAAATCTACTACTATTGAC 122 35 100.0 43 ................................... TAAACGACATAGATTCATTTATTATTAAACTTAATAGGATTTC 200 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 3 35 100.0 44 TTTCCGTCCCCATTAGGGGATTATTTAATTTAACC # Left flank : TGCATACTTTAGAAAATTAATCATTAAATTAAGTGAGTGAGGAT # Right flank : CCCTGTCTTTGAAACAACAGATATTTAATGGCTCCAAAATGCAAAAAACGGCGGAGATTACAAATTGATCCTAAAAGGCACTTTAGCAAACTAAAATAACACCGTTAAACCGCACCACTATAACAACGGCGCAGATTTAATTTCTCAGGAGTTAAATTCTAGACCCATTATATCATATAAGAAAATAGATAATACAATAATAGAATCATCAATACAAAACATCAAGTCTTGAAATACTTTTACCAATATTAATGATTCTATTATTGTTAATTACACTTCTACATCGTAACAGTATTAATCGAGAGTAACTGTTTATATTTAAAGAATGATGCAGTCTTGTTCCTTACGTTCTCCAATACCCCAAGTATAGATATTTATAATGTCATCAAGGACATAGACTCGTAAGGAGTCCTCTATAGGGTTAATCATCTTACTAGCTCGCCGCATCATAGCATCATATTGCTTCTTATTAAGCAAAGCTTCAAACGCAGACTTTTGGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCGTCCCCATTAGGGGATTATTTAATTTAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 10122-12177 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEXI01000013.1 Veillonella parvula ACS-068-V-Sch12 contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 10122 34 80.0 43 AGAA...G.......-..................T GCGATTAATACCGCAGAAACAATGGCAAATGAGTTTGATGACG G [10130] 10200 34 88.6 43 ....T........T.-......C............ CAAATGCTTACTGGTGGTGCACTGGCGAGGCGTTAATTAAATG A [10212] 10278 34 91.4 43 .............C.-............G...... TAGCGGAATATGCAAATAAATTGAAAGACAATCCAGATATGCG A [10290] 10356 35 85.7 44 ............AGCA..A................ GTGAAACAAAAGGAAGAATTGAACGAAGCCAAGACTACAATCGG 10435 35 85.7 42 T...........ACC.C.................. TCAAAATAACCGCATGGCGCATGGATACCAAGATATGCTAAA 10512 35 85.7 45 ............ACCA.......G........... GTAACAGACTTTGAAAACACTATCGATGTTACAGATAGCGTGGTC 10592 35 94.3 41 .................A....C............ GAAAAACATCTATTTAAAGTATAACATATCGTTAACCCGAA 10668 35 85.7 44 ...A........ACCA................... CATGACATGGATTGACGCAGGAATGCATTTAAGCTTAGCTGCAG 10747 34 91.4 44 .............C.-............G...... AAGGTGGGTACAAGTCGTACAGCTCTATTAGAACAAAACGTTGA A [10759] 10826 35 88.6 43 ............ACCA................... TAGCAAGAGTTTCTTGTGAGTATGTGAAGGTGGATAAAAAGGT 10904 34 88.6 42 .............C.-......C...A........ GATTGACCTCGTACAAATGCATTGTATCAATCGGGGCTTTTA A [10916] 10981 34 85.7 43 ........-.....CA......C...A........ GAAAGCCTTGAAATCCAACGATAGTGAAAAAGCGTTGCTGAAA T [10995] 11059 34 88.6 42 .............T.-......C...A........ ACGCAAGCTTGAGGAAAAGGAACAGTTACCAGTGGTAGACCG A [11071] 11136 34 88.6 44 .......C.....C.-.A................. GATATTGGGCATGTCCTCACTCATGCCGAGGCTGCCGATAATAT A [11148] 11215 34 88.6 44 T...........-.T...................T AACTTGTCGGACGCAGAGAAAATCAAGCACTACGTAGAGAAACT G [11230] 11294 35 97.1 43 ..........T........................ TGTTAGCTGAATTTCTAGCTAGTCAAAAGAAATAATAACTCTT 11372 35 100.0 40 ................................... TTGTATGATGTTATTTCTTATGAAGAATTAAATAATATCT 11447 35 100.0 42 ................................... CAAAAATCTTTCAAGAAACGATTTGAAAGAATTCATAGACTA 11524 35 100.0 43 ................................... CATATGGAATAGAATTTTATTGATATCTCAATCTCTAAAAGAT 11602 35 100.0 42 ................................... AGAGGATGATAAACGCTTGAAAGCACTATCTAAAAACGACTC 11679 35 100.0 43 ................................... AATCTATGGCCAATGCGTAGCTTCGTGAGCCCTTTCACAATCC 11757 35 100.0 42 ................................... GAATTACAAGCTTTGTTATATTCCTTGTGATGGAACATTACA 11834 35 100.0 42 ................................... CTAAGGATCATATCATAAGAGTCATCCATATCAATGAATTAA 11911 35 100.0 39 ................................... TTGCCTTGTATGTGATGAATAGAAAAGGGATGAGATAAT G [11931] 11986 35 100.0 44 ................................... TACTAAAAGGAGGTAAATATGTACAAGGTATTTGTAACAAGGAA 12065 35 100.0 43 ................................... TTATAAGCGAGTCCAGAAGTTACAGAAGCGGAGGAAAAGCCTG 12143 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================= ================== 27 35 93.1 43 GTTTCCGTCCCCTAATGGGGATTATTTAATTTAAC # Left flank : AGCGGTAACTCTTTATCAAACTTCTGTGTAGAGGTATTTTCACCTTCCTCAAGATCTCGACGATCTACAGCTGCAGCAACATTATCCGCTTCGTACACAATGTATGCATAATCATCATTTTTTAGTTGAGCTGCACTAAGCTCTTTCCCGTGATGATACTTCAAACAATGAGTAATACTTTGCTTTAAGCCCATATCGGAAAAATAGGGCTCAATGAAAGCAGCGCCGCGCTTAGAATGTGCATCGGTTCCCTGATTAGCTCGATACACGACTTTGCCGATATCATGAAGCAATGCACCCTTTACCAGTGCATCCCATTTACCCATCACATCGCCTCCAAACTCTACTTAAGAAATAAAAAACCTATTGACTTCATTATATATTCATTTCTGTTTAAAACCAATAGAAAAACCATCCGATTTATACAAAAATATAGCCAGTATATTCACTAAAAAGAATATACTGGCTATATTTTTGTACTTATATGAGTTTTTGACATA # Right flank : CCCTGTCTTTGAAACAACAGCTATTTACTAGTTCCAAAATGCAAAAAACGGCGGAGATTGTAAATCCACCCCAAAAGGCACTTTAGCGAGCTAAAATAATGCCATTTAACCGCGCCACTATCACAACGGCGCAGATTTAGTTTTGCAAAGATTAAATCTAGGTCTATTATAGCACATCACTAACATTAATGAAAAACATATGAAAATAGAGCCACCTTATATAAGGTAGCTCTATTGAGGTGCCATATGTAACTTATTTTCAATAGTTCATCTGCTCCCGCAGTTCTATTTATTTTCTTATACGCCTATCCTCCTTTTCCAGATTTCTCTCCACCCTCCTATTTCTACTTTCACCGTCCAACGAGTTATCTCGTTAGGTCTCTCCAGGCGATAAATAGTTCGGCCACGACTTGAGGGTTTTGGCTGAGTTTGATGCGGGCTAGCATTTTTCGCACGTAGTTGCAGTGTTCTAGCATCGCTTCATTCAGTTTGTGTTTGAC # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTAATGGGGATTATTTAATTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [43-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //