Array 1 78225-77896 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAPA01000009.1 Erwinia amylovora 01SFR-BO, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 78224 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 78164 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 78104 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 78044 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 77984 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 77923 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTTCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 89794-87688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAPA01000009.1 Erwinia amylovora 01SFR-BO, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 89793 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 89732 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 89671 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 89610 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 89549 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 89488 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 89427 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 89365 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 89304 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 89243 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 89182 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 89121 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 89060 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 88999 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 88938 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 88877 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 88816 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 88755 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 88694 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 88632 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 88571 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 88510 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 88449 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 88388 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 88327 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 88265 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 88204 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 88143 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 88082 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 88021 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 87960 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 87899 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 87838 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 87777 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 87716 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 102925-100701 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAPA01000009.1 Erwinia amylovora 01SFR-BO, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102924 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 102863 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 102802 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 102741 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 102680 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 102619 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 102558 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 102497 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 102436 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 102375 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 102314 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 102253 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 102192 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 102131 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 102070 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 102009 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 101948 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 101887 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 101826 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 101765 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 101704 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 101643 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 101582 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 101521 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 101460 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 101399 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 101338 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 101277 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 101216 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 101155 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 101094 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 101033 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 100972 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 100911 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 100850 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 100789 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 100728 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.3 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //