Array 1 171661-171096 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXGB01000001.1 Pasteurella oralis strain WCHPO000540 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 171660 36 72.2 30 ...A..A...T..A.T.AG....AT.A......... AATGAAGCATGGCTAAAAAGGTCATAAAGA T [171655] 171593 36 97.2 30 .......C............................ TGCAAGTGAAGTTACAGTCAGTTACAAGCA 171527 36 97.2 30 A................................... TGACCGTACAAATCAAACCATAAATTGATC 171461 36 100.0 30 .................................... TAAAAAATATTGGCTTGAAACGCTGATCAA 171395 36 100.0 30 .................................... GCTTTATCTATACACAGCAACTCGAGATGA 171329 36 100.0 30 .................................... AAAATATCATCGTTTTTATCAAGCACCTTG 171263 36 100.0 30 .................................... GGATAAACCACTCCACCGAAGTGGAGTGGG 171197 36 100.0 30 .................................... TCACGTAATCATAGCCGCGAGATAAATAAT 171131 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 96.3 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : AGAAGGTATCTTTGATGCACTAGACACATGGCAAGATTGTATTGATATGGCAACCTTAGTATTAGAGGGGATCCATGTTAATGTAGAACGTACTAAAGAAGCAGCATTAAAAGGTTATTCGAATGCGACGGAATTGGCAGATTATCTCGTAGCAAAAGGTGTGCCATTCCGTGATTCACATCATATTGTAGGTGAAACAGTCGTCTATGCAATTCAACAACACAAAGCGCTTGAAGCATTAACTGTCGCTGAATTTAAGCAATTCAGTGATGTAGTAGAAGAAGATGTCTATGAAATCCTTTCACTTCAATCTTGTTTAGATAAGCGCTGTGCCAAAGGCGGAGTATCCCCATTACGCGTCGCCGAAGCTATCAACGAAGCAAAACAAAGATTAAGCTAGTGCTAATGAATAGCAAAAACGCAATCTCATAGATTGCGTTTTTATCATCACCTAACTAAGAAAAGAGTAAAAATGGTTCACAACTTATAAAAGTAATTAA # Right flank : CTCAACGCTCTCATTCCTTATATACCAAAGAATGAGAGCGTTTTTTATGACAAAAAAGAGAGACATTTTTTACTATTTTCAAATAGTCTTTTAAATTTTTAAGCAAAAATTGCCTCAAGAATATTCTTTAATAAGATAAAAAAGAGTAAATTTTCTGCTAAGACAAGACAATAAAAGAACAAAAAACAAGCAATCAAATATATTTTTATGTGTTATATAATAAGCAAACATCTAATACTAAATAGTCAGAAAAGTAGCATTTGATTTGCATTTACTTTTTTCTCTTGAGGCTTTAATTCGCCTAATAAAATTGTCATACTCGCAAACTGTTTTTCAGTGACTTCTAAACAACGAATTGATCCTTCTTCAGGTAAATGTTCACATAATCGCTTATTATGTTTCTGCATAGCATCTCTTCCTCTAATAATTCGTGCATAAACAGAAAGCTGTAACATTTGATAGCCATCTTTCAATAAAAAATGACGAAATTGACTTGCTGC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 26607-25497 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXGB01000008.1 Pasteurella oralis strain WCHPO000540 8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26606 28 100.0 32 ............................ TTTATCGAAGCAATAAATGCTGGCATTCTGAT 26546 28 100.0 32 ............................ ATTAGCAAACTGCACAGTGCAGCAATGTTGCT 26486 28 100.0 32 ............................ AGAGCTTGAAGATTTAAATATTGAAAAATCAC 26426 28 100.0 32 ............................ TTTGCTGTCAACACGGTTTTATCCGCTTATTT 26366 28 100.0 32 ............................ TGCACTTATTGCATTTTTAACTAAAGTATTAT 26306 28 100.0 32 ............................ AGAAACGCCACAAGAAGCCCCTACCATATCTT 26246 28 100.0 32 ............................ TCGCGCTATTTATATGATTTATGATGAAATAT 26186 28 100.0 32 ............................ GCTTTCGTTTTACTCCTAAAGGTGAATTGCGC 26126 28 100.0 32 ............................ TACGCATGTTACGCGATCAGGTAAAAAGTTAA 26066 28 100.0 32 ............................ TTAACGGGTGTGGTATCCGCACACCAGCGTTG 26006 28 100.0 32 ............................ AAATTCGTAAGTTTTCGCCGTCAAGCGCAAGC 25946 28 100.0 32 ............................ TTCATGCTCAAAAGTTGGCATATTAATAAATT 25886 28 100.0 32 ............................ GTCTTCTGAAACTGTTTTTATACCTTTTAATC 25826 28 100.0 32 ............................ AAGCTGTGGCGCGATTAATCGGTCGTCATAAC 25766 28 100.0 32 ............................ ACGATAAAGAAGTTGTTTTAGTTACTTTAATG 25706 28 100.0 32 ............................ CAACGAATCCAAAATCCCCAAGTAAAGGTAAT 25646 28 100.0 32 ............................ TTAAATTGCTGTTATTTGTTTCAAATACATCC 25586 28 100.0 32 ............................ ACATTTCAGTTTTTAACTGTTCCGTTTTTGCT 25526 27 82.1 0 ..........C........CAC..-... | TTT [25509] ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.1 32 GTTAAACATCGTATAGATGGCTTAGAAA # Left flank : GCTATATCTACAATTGTTACAAGCGGGGTTGCAAGATTATGCCTTAATTAGTGAAGTGAAAAAAACGCCTTCAGCAATAGAGTATCGTTGTTATAGTCGTGCCCGTCGTAAAGGGCAAAGTGCTATTAGTCGTACGGAAAAGTTTTTAAAAAGTATTGATAAATGGCATGAAGGGATTCGTGAGGAAATGCAACAACGCCAACAAAACACGCCCTATTTTCCACATGTACATTTAAAAAGTGCAAGTACAAATCAACGTTTTATTTTGGCAATAAAAGCCAATAAAACATCTCAGCCTTATATTGCTCAATTTAGTAGTTATGGGCTAAGCAGTAAGGCAACGGTGCCGCACTTCTAACCCTAATTTATAACCCTTTTTTCTAGCTAGATAAATTAGTTAATAAGATCAAAGGGTTATAAATATACTGTAAAAAAGGGTTTTTCTTTCAGATGTTCTTTAACAATTTGAAGAATAAATGAATTTTTGTTAGTGTTATGTA # Right flank : TAAGGAGTGTTATTTAAGCATATTGCAGAGATTTGACGGTATTTAAACTGAATTTTAATATTTCTATTTTTTGTTAAAGGAGGGCTTTGTGCGTAAGACACCTTATATTGTTTCATCAGATTTAAAAACCATTATGCATTCTAAGCGAGCGAATATTTATTATTTAGAACATTGTCGTGTGTTGTTAAATGGTGGGCGAGTGGAATATGTGACTGATGAGGGAAAAGAATCATTATATTGGAATATCCCTATTGCCAATACTAGTTGCCTATTATTAGGGAGTGGTACATCAATTACTCAAGCTGCAATGCGTGAGTTGTCAAAAGCAGGGGTGATGGTGGGTTTTTGTAGTGGCGGTGGTACACCTTTATTCAATGGAACGGAAGCAGAAATTGGTTGTGAATTTTTTAGTCCTCAAAGTGAGTATCGTCCAGTGGAATATTTGCAACAGTGGTGCCGATTTTGGTTTGATGATGAGAAGCGTTTAACCGTAGCCAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACATCGTATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCAACATCGTATAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 71701-72087 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXGB01000008.1 Pasteurella oralis strain WCHPO000540 8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 71701 28 100.0 32 ............................ CGCATCAAAGCCGTGTCTGACTACGCATCGGA 71761 28 100.0 32 ............................ CTGCAAGAGAAGAACATAAAAAACAACTTGAA 71821 28 100.0 32 ............................ TTGTTTACTTCCTGCGTCACGTGCATTAATAA 71881 28 100.0 32 ............................ GAGAGAGATAATGAGAACGTTTAAGAGTTATA 71941 28 100.0 32 ............................ AATACCCAAGCAATTTACGTTTTGTTGCTTAA 72001 28 100.0 32 ............................ ATCACCGCTTGCTTCGCTACCATTTCCCATTC 72061 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GGTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCCTTACAGCGCAGATACTTATTTACACCGTATTGGGCGTACTGCACGAGCAGGGAAAAAGGGGATTGCGGTTTCTTTTATTGAAGCACATGATTACAAATTATTAGGTAAAGTTAAACGTTATACTGATGAATTATTGAAAGCGCGTATTATTGAGGGCTTAGAACCTCGTACTAAGGCCCCTAAAGATGGTGAAATTAAGACCGTAAGCAAAAAGCAAAAAGCACGGATTAAAGCAAAACGAGACGAAAAGCAAAAACAAGCACAACAGAAAAAAGTGAAAATACGACATAAGGACAGTAAAAATATTGGCAAACGTCGTAAACCGAGTGGACAAACGAGTAAAACATAATAAACAACCCTAAAAATAATCCTTTTTTCTTAACAGATTTTTTATCTAATAGAATCAAAGGGTTATTTTTATATCTAAAAGAAGGGTTTTTGTGTATAAAATGCGCTAAAACTTGATGAATACTGGTATGTGAATTAAACTACTAGG # Right flank : AGCAGAAAAATACGTTTATTGATGATTATTATCATCTAAACACATTATATTCCTTTGATTTTTTTAGCCTTTCTGTTTATTTATCATTGGATGTTTGGTTTTCAGTTTTATTAAGTCGTATAAAATAAACAACCGCACTTTTATTGATAAGTAAAAGTGCGGTTACTTTTTATAGCATTTTACAATACGTTATTGTACAGCTGGAGTACCGTATTTTTCAGCTAATTCATTATTCATTTGAGTAAATTCATCTGTAATTTTGAGCAAAACATCTCTTTTTACTAACAATGCTTTCCCTCCAGCTTCTGAAGGATTCTGTTGTAATTTTACGTTATCAGCCATTAGTTCAGATGAAGTAATAAGTAAAATTTTTGCTTTTTCTTTTAAGTTAAGAACTTCAGCACTATAAATTGGTAATGTATCTAACTCTTTGACAATCCCATCGATTTCTTTTGAAAATGTGACTAACAGGGTTTCTAAGGCTTTAGTATCACCAGATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //