Array 1 171241-170175 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQGS01000039.1 Pasteurella multocida strain J1APM isolate swab isolate 2 contig_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 171240 28 100.0 32 ............................ TCGCATTGCAGAAGATTACTTGTGAAAGATAT 171180 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 171120 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 171059 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 170999 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 170939 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 170879 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 170819 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 170759 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 170699 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 170639 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 170579 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170519 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170459 28 100.0 49 ............................ AGTAGATGGCTTAGAAAGTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170382 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170322 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 170262 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 170202 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================================= ================== 18 28 99.6 33 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 92153-90026 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQGS01000035.1 Pasteurella multocida strain J1APM isolate swab isolate 2 contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 92152 28 100.0 32 ............................ GCAATGTGAGTCATGCTAATTTTACGATTATC 92092 28 100.0 32 ............................ TTGGACTTGTGTCAGTAACTGTAACCGCTCAA 92032 28 100.0 32 ............................ GTTGCAATTCAACGTGGTGAGCAAGAAATCAA 91972 28 100.0 32 ............................ GTTGGCCGCTACAAAATTGTCACTTTCAATAC 91912 28 100.0 32 ............................ GCTGTATAAGCGGTTAAAAAAGTTATATTTTT 91852 28 100.0 32 ............................ ATTATTTCTTTCAGGTGTTGGGGGGATTGAAT 91792 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 91732 28 100.0 32 ............................ GCTTGAAAGTGTTGGCTTGAAACTTTCGGGGC 91672 28 100.0 32 ............................ TTGATCGTTTGCGCGAAATACCAATTTTTTTA 91612 28 100.0 32 ............................ AACAGCTCTTACACCAGCGCAAAAATTTGCGA 91552 28 100.0 32 ............................ CAAAAGATTGAATTACATCATCGGCTACAGAT 91492 28 100.0 32 ............................ GAAGCGGTATCAATTCTGAAAAGAAAAGGAAT 91432 28 100.0 32 ............................ GTGCCGAAATTGCACAAAGCGGACTTTGCACA 91372 28 100.0 32 ............................ TGTACCCGAAACAACTTGCAGATTAGCGCGAG 91312 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 91252 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 91192 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 91132 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 91072 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 91012 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 90952 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 90892 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 90832 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 90772 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 90712 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 90652 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 90592 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 90532 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 90472 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 90412 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 90352 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 90292 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 90232 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 90172 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 90112 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 90052 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 36 28 99.1 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //