Array 1 107069-106264 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEB01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2247 NODE_5_length_213546_cov_4.01813, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107068 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107007 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 106946 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106885 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106824 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106762 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106659 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106598 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106537 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106476 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106415 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106354 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106293 29 96.6 0 A............................ | A [106266] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125182-123201 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEB01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2247 NODE_5_length_213546_cov_4.01813, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125181 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125120 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125059 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 124998 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 124937 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 124876 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 124815 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 124754 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 124693 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 124632 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 124571 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 124510 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 124449 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 124388 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124327 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124266 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124205 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124144 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124083 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124022 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 123961 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 123900 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 123839 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 123778 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 123716 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 123655 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 123594 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 123533 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 123472 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123411 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123350 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123289 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123228 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //