Array 1 21530-20542 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITF01000096.1 Hafnia paralvei strain PCM_1198 1238, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21529 28 96.4 32 ............A............... ACAAAAACCGTATTGCGATAATCGAGTGTTTC 21469 28 96.4 32 ............A............... CGTTTGGAAGCAGGTAGTGAGCGACTCTTTCG 21409 28 96.4 32 ............A............... TACTCCGCAATCACTCCGTGGGTAGAAAAGGC 21349 28 96.4 33 ............A............... CTAACCCATCCAGTCTCTGTATTCACCAGATGC 21288 28 100.0 32 ............................ AGCTTCCAGCCGGATGGTAACTTGTAAGGCTC 21228 28 100.0 32 ............................ TTAAGAACCATTTGATCACGGACATACGGATG 21168 28 100.0 32 ............................ ACTTTTTAAGAATTTCAATTTCGTCATTAAAG 21108 28 100.0 32 ............................ CCAAACTTCAGCTAGTTCCTCAGATGTAAGCA 21048 28 100.0 32 ............................ GTTCCGAGCAAGTATAAAAACACGTTAGAATT 20988 28 100.0 32 ............................ AAACCCACGGATTGGATTCCCAGCTTTCATTA 20928 28 100.0 32 ............................ GGTTTACCCTTCTTCGCTGAGTGATGTGCTGA 20868 28 100.0 32 ............................ AATGGTTGGATTGGACAGTGCTCCACGACGTT 20808 28 100.0 32 ............................ TGAAAAAATGATTGAACACGCCAAAGCGATGA 20748 28 100.0 32 ............................ TTCGGCAAACGCCGCCATGTCGTCAGCGGTCC 20688 28 100.0 32 ............................ AGAATGCAAAAGCTCAGGACGCACTGGAGTCA 20628 28 100.0 32 ............................ CAACGGAAACCCGCCGCTATCGGGAGAGAGTA 20568 27 92.9 0 ...A....................-... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.7 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : TACACAATGCAGCGACATTCAACGAGTCCCTGAGAATGTGATGCATTGCACCGTGAGTCGAGTGCAGGTGAAAAGCAGTGCGGAACGACTGCGGCGCAGATCGGTTAAAAAAGGCTGGCTCACCGAGGAACAGGCGCGGGAGCAAATTCTGGATGCCAACGAGCAACGCACTTCACTGCCCTTTATTTCGTTGAAAAGCCTATCCACTGGACAAATGTTTCCGCTGTTTATCCGCCAAGGGAAAGCGCAGTCTCATCCTCAGGCGGGAACCTTCAGTAGCTACGGCTTAAGCTCAATCGCCACTGTGCCGTGGTTTTAGTTTTGTTGGTTTTCAGCGCCCGCCTGAAACTAGACGGGCGCTTCAGCTAAAACCCTTTTTTATTGCTTGCTCGTAACTTATTGATTTTCAATAATCATGGATGATGCAAAATAAAAAGGGTTTTATAAAGAGTAACAGGCTATTGTTTTGATTTATAAAATCTTTCTCCAGTTATTCTACA # Right flank : CGGGTTTGTCGTTTAGGCTACGAACTCACGGCCGTTCTTTTGCTGCATCCGCAATGATTTAGCCTATCTCAGTCAGCAAAGGCTAATAGCTGGCGCGTGTAGTCTTGAGTTGGATTTGCAAAAACTTCAGCGCAGTTTCCATGCTCAATCACTTTTCCGTTTCGCATCACCATCACCTGATGGCACAGTGACCGCACTACCTGCAAGTCATGGCTGATGAACAGGTAGCTGAGCTGGTGGCGTTGCTGAAGCGTTTTCAGCAGCGTTAAAATCTGTGCCTGCACGGAGCGATCGAGCGAAGAGGTCGGTTCGTCCAGTATCAATAACCGAGGTTCAAGAATTAAGGCGCGGGCAATCGCAATACGCTGACGCTGACCGCCGGAGAACTCGGTGGGATAGCGATAACGAGTTTCTGGATCGAGCCCAACTTCGTTCATGGCACTGATTACCCGCTCTTCCCGTTGCTGTTCGTTCAGCTTTTGGTGTACCTGCAAGCCCTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 32195-31447 **** Predicted by CRISPRDetect 2.4 *** >NZ_SITF01000096.1 Hafnia paralvei strain PCM_1198 1238, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32194 28 100.0 32 ............................ TCGATAGCTCACTATGTGCGAATGATGAAAAG 32134 28 100.0 32 ............................ GCTTTGTGCAGCAACCACAGCACAACCTGTAA 32074 28 100.0 32 ............................ ATCAAGGCGTTCCGGTAACTCATCAGGAACAT 32014 28 100.0 32 ............................ TATGGTGTTTACGAACCATCACCTAACGGCCC 31954 28 100.0 32 ............................ TGTTCGCCAACCGCATTCACGGCTTGATTGTT 31894 28 100.0 32 ............................ ACGTGGACGTCGAATTCGCTGGCTAACTAAAG 31834 28 100.0 32 ............................ GATCCCGCCAACGACAAAGGAGTACCTCAATA 31774 28 100.0 32 ............................ AAGCTATGGGCAGATAAATACGGTAAGAAGCC 31714 28 100.0 32 ............................ ATCTCCGCATTAAAAATCACGCCGCGCCGCTT 31654 28 96.4 32 ...T........................ CAACGGAAACCCGCCGTTAACGGGATGGAGTA 31594 28 96.4 32 ...T........................ ATTGGCCGCCGGACGACGTGACTGTCCAAAGT 31534 28 100.0 32 ............................ GCCTTTTGTGGTTCGTTTAATGCAATTGGTAT 31474 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTGGTGCAGTGGTAGGAACGTTGTTGGCACTGGCTTCGGCGCGCAGTGAATGGCCGATGGTCAGCTCAATGTTCTTATGCATTTTCGCCGCAATGATGTTGTTCCTGTACGCTTCTAGACCTTCCAAGAGTAGCCGCGTAGAACCTGTCTGAGCGTGACCGCTCGTCTCCCCGTCGCTGAAAGAGGCGGGGAGGCCGACGACTGGGCGTTCGGAGATATCTGCGGCAACCGTGTGTTGACCATATCACACAGCTTTAGCATCAGATACGCAGATGCTTTCAACCACGCACTCACCTGATCCAAACTCTCCTGCGGGATTTGAACCCCATTCTCCAGTGATTCACTTAGAAATGAAAATCAGTGGCGCAAAACCCTTTTTTCCCACCCACACGCAACGTATTGATTTTATGTGTGTTGCCGAGCCAGAAATAAAAAAGGTCTTTTAACCAAAAATGAGTTACTGCTCTGATTAGTCAAACCTTTTTGCTATTATTCTACC # Right flank : ATATAATCGTGCTAACTATTTTCAGTTTTTGGCATGGATTTTCATTTTTTTAACAGAACATCTAACTTAACTAGGTAAAATCCATTGTGAAAAGACAAAGCATTAAAGTTATTTAGCATTCGTTGTGCTTTTTATTTTTCATCAAAACAATTAATTAGCTAATTTCATTGATCATGGTTCAGTGATTTATTGTATTTTGTATGTAAATTGAAAAACACGACAAAGTAATTAAAATGAAACGAAAATGGTTGTGATAATAAAGATAAAAGTATACATATAACCCCAATAACCGATCTCCCTCCATCGTGGTACTTCTAGAGTGAAAAAATGGAGTAGCGCCAACAAGATCGTGCTTTAGGCTGTTTATTCTTCGGTGTTACCGAAATGTAATAAACAAACTCATAACAAAATGACGATTAAGTCATCAAATAGCCGGAATAGTGCGAACTTAGGTTTACGATGTGAGTTTTTTGTGAAAAAATTGTAGTTAGTTTTTAATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //