Array 1 21749-22902 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGOY01000010.1 Staphylococcus pseudintermedius strain VTH711 10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 21749 36 100.0 29 .................................... GATGAACCTAAAAAGTCATCAATGTTTGA 21814 36 100.0 29 .................................... ATATTCACGCAATTTATGCCACTCTTTCA 21879 36 100.0 29 .................................... TTGAAACAGAAACACTTAACGATTCCGAT 21944 36 100.0 30 .................................... TGCAGGAATCGGTTTTGTCCTGTATGCGCG 22010 36 100.0 30 .................................... TATTTAAATTACGTTTCGCACGTTCAATCT 22076 36 100.0 30 .................................... AGAGAAGAAATTGTGGCAATACGGTATTGT 22142 36 100.0 31 .................................... CGTCGATTTCGACATAATCAATCGCCTTATG 22209 36 100.0 30 .................................... AGAGAAGAAATTGTGGCAATACGGTATTGT 22275 36 100.0 31 .................................... CGTCGATTTCGACATAATCAATCGCCTTATG 22342 36 100.0 29 .................................... AATATAAAAGGCGCTAAGAGGCGTTATAT 22407 36 100.0 30 .................................... TGAGCCTTTATCATTTAGAACAGCTAGAGT 22473 36 97.2 30 ............................A....... ACAATACTTGATGCAGGCAATAACAAGCTG 22539 36 97.2 29 ............................A....... GGACAACAACAAGATATTGCTCAAGCCTA 22604 36 97.2 30 ............................A....... TTTCCTTCGTGATTTCTTCTTCTACTTCGA 22670 36 97.2 29 ............................A....... GCTAAAAGTCAATGTTACTTCATTCCTTA 22735 36 97.2 29 ............................A....... TCACAAACCGTTTATGAAAAAAATACATC 22800 36 97.2 30 ............................A....... CGAAAGTAAAGATAGTATGCAAGGTGCAAG 22866 35 88.9 0 ..........................-.CA.C.... | TC [22899] ========== ====== ====== ====== ==================================== =============================== ================== 18 36 98.5 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 28063-29024 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGOY01000001.1 Staphylococcus pseudintermedius strain VTH711 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 28063 36 100.0 36 .................................... ACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG 28135 36 100.0 34 .................................... ACTAGATACCCAGAACAAAATAGGTCTAACGAAA 28205 36 100.0 36 .................................... TCTATAAGTTCATTAATTCCGATACCTAGATTATCT 28277 36 100.0 37 .................................... TAATAGTGTTGTTCTCTATTAAAAGATACAATCCTGT 28350 36 100.0 34 .................................... TAGAATGTTATTATCTAAGTGGTCGATGTATTCC 28420 36 100.0 37 .................................... TCATACTAGCACCCCACTCTCTACTGAACAAGTATCA 28493 36 100.0 35 .................................... CTTAAAATCTAATTGCATTGTTATCAATTCCTTTA 28564 36 100.0 35 .................................... TTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT 28635 36 100.0 36 .................................... ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA 28707 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 28779 36 100.0 35 .................................... AAGTTAACGGCATTACCTAATAAAAATATTTTAGG 28850 36 97.2 33 ...................................C TCATCTTTCATGTCACTGATTAATTCATTTGTA 28919 36 97.2 35 ...................................C GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT 28990 35 91.7 0 ............T.................-...G. | ========== ====== ====== ====== ==================================== ===================================== ================== 14 36 99.0 35 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : TGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 37987-37748 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGOY01000001.1 Staphylococcus pseudintermedius strain VTH711 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 37986 24 100.0 45 ........................ GCATAAAGTTTTGATATACACGATCGAATATGAGTTCTCGTCCCC 37917 24 100.0 50 ........................ AGTGGTCCAGAATTAATACATGGTAAAGGAGTATATCAGTTCTCGTCCCC 37843 24 100.0 47 ........................ GAAGACCAATTAGAATCATATCGCGTCTTAGAAGAGTTCTCGTCCCC G [37835] 37771 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 4 24 100.0 48 TCTTCTACGGGGTAGTTATCGAAT # Left flank : CGTAACACTAATGTCTATATCTGGAGCATTGTTAGCTGTTACTTCGCTTTCAGTCGTATACTAATTAATAAAGTATTTACTAATGTGGTTGTATCAAAAATATTTGCTTTTATATCTTGCTTCAGATTTAATTCTTATTGTTTGTTTTCTTCTTTTTATTTTCTTAAGTAGTAACTCTCGAAATTGCACTACACATCCAATTCCTCAATAATATGCATTTCATTCGCTGTTATTTGTATTTAGTATTTCTAATTCCAACTTAATCGCAAAGAAATTATTTATATGAAAGTTATTTTTGTTTCTGTTTATTTAGAAATTGAATGTCGATTAATTTCAATAATAATGAATTACAGTTTAAATCTTGATTTTTTGTTCCTCTTTTTTGCAGAATATTTTATCAAATCAAATATATTTTTAATACTTTTTCTCTATTCTACGAGGATTATCGATTTCTTTTTAACCAAGCCAATTGGGATCATCAAGATGAGATCCTCGTCCCC # Right flank : TTAGATAGCTCTTTAAAGCCTATCAAATCAATAGTTCAAAGGCAAAATTTACTGTCAAAAATAGTGACAAATCACTTGTACTATAAGTGCAGAATGTCACATTTTTTGACAACTAAATTTCAGCTATACTCTAGTTATATTATACTATATTTCCCCATGCCTAAGCTTGTTTTCATACCTGATCCAGAAAATTCGCCAAACTTCAATAAAAAATGAGTTAGTTGTAGAAAAGGTAAGGGTCCTTTAATTTTAAACACTATTTCTCCCGTAAATGAAGGGATTTTAACTTTTTCTAAGTTAAATCGTGTACTTTTCAATTTATAGTCAACAATATTAATATTTTTTTCTAAAAAATCTAATGTTTCTTTATCGTACATTTTATATTCTTCGAAAAAAGCATCAAATTGTATCATAATACTTCTAAAGAAACGTTTAACCTCAGGAAAAATCATGTAATTACTCTGATATTTAAAAGACATAGGTGTCTGTATATTAATTCT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTCTACGGGGTAGTTATCGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //