Array 1 14493-13339 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSAM01000005.1 Salinivibrio sp. VYel1 NODE_5_length_217613_cov_143.865987, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 14492 28 100.0 32 ............................ TTGTTGCTTTAAAGTCCTTAACTAATCGCTTA 14432 28 100.0 32 ............................ AACATCCAGGGCAAAACCCTCGACCAGTTTTT 14372 28 100.0 32 ............................ ATCACGTCCAATCCAGCAACGCGGTACTTACT 14312 28 100.0 32 ............................ ATCAATATTGCAGGCAGGCCAACCGACTTACG 14252 28 100.0 32 ............................ TCCATTAGCTAGAGGCATAATAGTCTGGTGCT 14192 28 100.0 32 ............................ TGACACATCGTCAACAGGGTCGCCATTGGCGT 14132 28 100.0 32 ............................ AACTACGGGGGGCACATTCCTTTGTTGTTCTT 14072 28 100.0 32 ............................ AATGAACTTTTTCAGAGCGTCAATTGCCCCCG 14012 28 100.0 32 ............................ TCACAATGGTTGACCCGCGCGTCTTTGAGAAA 13952 28 100.0 32 ............................ CCAAGTACGCGTTAATCAAATCGTATGACTCC 13892 28 100.0 32 ............................ ATAAGGGTGTCGGCACTCCATACTTGTTTTTT 13832 28 100.0 32 ............................ TACAAGACCTTGCTGATATTGTTGACGGCGGT 13772 28 100.0 32 ............................ ACGACTGTATGTTCTGATCGATATCGGCAAGA 13712 28 96.4 32 .............T.............. GCTTAGATGCAGACGATATGGCGAAAGGGGCT 13652 28 92.9 33 .............T....C......... ATCTAATCGCCCCCTCAAGAAACCAAGTCTTTG 13591 28 78.6 136 ...G.........T.......G...GTG ACACAAGCCCCAGCACGGTGTTGGATATGTGGAAATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTAGCCTCAATGTCGGAGGCGCGCGGCGCAAATCACACCAAGCTTGTACGATCGAGTTGGCGCTT 13427 28 85.7 32 ..C...CTA................... AAGCTGGATATGGGTGATATTGACGGTCTTAC G [13423] 13366 27 85.7 0 .....................G-...TG | C [13341] ========== ====== ====== ====== ============================ ======================================================================================================================================== ================== 18 28 96.6 38 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTGAAAGACTATGCCTACTTTAAACGCTGGAACTACAAATCGCCGCAGCGACTGTATAAAAAACTCGATCGGCGAGCGGCCGCGATTGCCAGCAAAAATGGTTACGATGAGGAGGAAGTAAAGCGTCGTTTGTTGGAAAACATTAAAACGGACGACAAACGCTGGTCCCTGCCTTTTATTCAAGTGACCAGCCTGTCGAGCCAAAAACGAGCAGGGCAGCCAAATACCGAGTTCGCCCTGTATATCGAGCGGGAACTCACCAAACAGCCGCCCAATAATGGCCAACCATTCACCTGTTATGGGTTAAGCAGACGAGAGCCCGACCAGCAAAGTGCGGTGCCGTGTTTTTGAGGGGGCAACCCCTCTTTACCCCTTCTTTTTGGCTCTTTAAAAATAAACCGAAAATACAGTCAGTTACAGCAGGTGCTTTTTAACAAGGGTAAAAGTCCATTTTTATCCTAACGGCCTGTTGTCACTGACGATTGTTACGTTATTCTATA # Right flank : ACACAAGCCCCAGCACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATTGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCACTTGGGTAATAGATGGCTGACATTGCACTGGCGCTTGTCCGATCTACGCACAGGCAGCGACGATGACACAAGCCCCAACACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCGCTTGGATAATAGATGGCTGACATTGCACTGGCGCTTGTCCGACCTTGTATCTCTACGCACAGGCAGCTTAGAAAAATTCGGCTGGCCGTCGATGTTAGCCATGATGGTTCACTGCCGCATAGGCAGCGTGGGTGACACAAGCCCCAGCACGGTGTTGGATATGTGGAAATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTAGCCTCAATGTCGGAGGCGCGCGGAGCA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.54, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 26258-25270 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSAM01000005.1 Salinivibrio sp. VYel1 NODE_5_length_217613_cov_143.865987, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26257 28 100.0 32 ............................ TCCCAGCCGTGGCCGTGAAAAGCCTGCCGTCA 26197 28 100.0 32 ............................ TCAGTCGCAGAAACTAAACACAGTTTTGAAGC 26137 28 100.0 32 ............................ GGAACACTAAACACCGAAAAACACGCAAAAAA 26077 28 100.0 32 ............................ TCTAGTGTCAGCAAGTGCGCGATCAAGTTAAG 26017 28 100.0 32 ............................ TATGAAGAAGTGCGGCAGAAAGCGGAACAGGC 25957 28 100.0 32 ............................ TGCGCGTCACGCCTTACGTGTTCAACAAAGAC 25897 28 100.0 32 ............................ GCAAACTGTTTGCACTGATGCAGGACTATGCA 25837 28 100.0 32 ............................ TAGCGGTTTCACTCCTTTGGCCACTTGCTTGT 25777 28 100.0 32 ............................ CGCTCAAATCACACAGGCACTCAGACATTGAG 25717 28 100.0 32 ............................ AGCAACGTAAAAAAATCCTGAAGGTTGTGCTT 25657 28 100.0 32 ............................ CAGTGAAAATCACCATCGGCATCATGCTGAAC 25597 28 100.0 32 ............................ AACGGTATCAGCTTTGCTCCGCTCGACGTCAT 25537 28 100.0 32 ............................ GTTAGCGCGAATGACATAGAAGAACACATCAC 25477 28 100.0 32 ............................ GGCCACTTTTTCTAAATAGCCAACCTGCTCGT 25417 28 100.0 32 ............................ TACCAAGAGATTTTTGATGCTTGTCTTTATTA 25357 28 96.4 32 .............C.............. TTCAGTCGCAGCGTAGTACCGTGTGATGTTCG 25297 28 82.1 0 .............C.......G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGGACGATCTGTTACCCCTACCGCATGTTGCCGCGTTTAGCACCGCTTTATGATGTGGTCTTTACGCAGCCTTATATTGAATATGACAACATTGCGTTGAAAATGGCGAAAAGCAAGCGTTGGTATGATATTGGTTTGAGCCATTTCGAACGCTGGTCGCAAGATGTGGGTGTGCCGTGGCAAATGATCAAACCGCACCTATTGGATACGATCAACCTGGCGCGAAATATGTGGCCAAATCAACTTAAGCAATTACCGATGTTAACGGAGCACAAAGCGATGCTGCGTGATCATTGGAAAGCCCTGCACGAGAACTTCACCATTGATTCATGATCCAGCCAAACCGGGCGCTAAATCGGCGCCTTCTTACCCTTATTTTTTGACTATTTAAAAATAAACAATAAATACAGATAGTTACGGAATCCCCTTTTAAACAAGGGTAAAAGGCCATTTTTATCCTAACAGCCTGTTGTCACTGACGACTATTAAGTTATTCTATT # Right flank : ACACAAGCCCCAACACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTTTCACGATCGAGGTTAATCGTTGGCCTTAATGTCGGAGGCGCGCAGTCCGCTTGGGTAATACATGACAGACATCGCACTGGCGCTTGTCCGACCTACACACCATTTTAATATCGGCGGTGCCATTGGCGTACATTGGTTATCGGAATAGCCACTTTTGGCCCGATAATACCATTGGCGTAGGTGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCGACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGAGGCGCCAGTTGCACTGCGCGCGGTGCAAATCACACCTAGCTTGTACGATCGAGTTAGCGCTTCTCCGACCTACGCACAGGCAGCTTAGAAAGGATTGAATGAGAAGTCTTATGTGTGCTGCTGTAAATCCAACGTTGTTCGGCTGAATCAATATGAGTCAAAAAGTTGGGAGTCACTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 30109-28181 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSAM01000005.1 Salinivibrio sp. VYel1 NODE_5_length_217613_cov_143.865987, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================== ================== 30108 28 100.0 32 ............................ AATACGCCAGAGGCCAGCGCCGCCGCCGTCAA 30048 28 100.0 32 ............................ TCAAGCGAGTTGATAAAAATCCTATACTACCT 29988 28 100.0 32 ............................ GCTGCCACCTGTGGCGATTGACGAGATGGCCA 29928 28 100.0 32 ............................ GCGAGGGTGAGCCATTTAAGGAAACCTATCAG 29868 28 100.0 32 ............................ GCTAACGGTAACGCAATCGAGGTCGCCAACTT 29808 28 100.0 32 ............................ CAACCGTGTTCGTTACGTGCTTTTTGTTTATC 29748 28 100.0 32 ............................ TTGCAACTCAACACCATTTACAATCAATACTG 29688 28 100.0 32 ............................ GGATTTGCGGATAAGATGACGCAATTCTCGGA 29628 28 100.0 32 ............................ ATATCGCTATGGAAAGACCGCTCAAGGATGTA 29568 28 100.0 32 ............................ AAAGCGCAAGCGAAACGCTTGCAGGAAGTCGC 29508 28 96.4 32 ....T....................... TAGATAAGAGATAAAGGTCCGTGCGTACGATG 29448 28 85.7 146 .....................G...GTG ACACAAGCCCCAACACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCGCTTGGATAATAGATGGCTGACATTGCACTGGCGCTTGTCCGACCTT 29274 27 89.3 32 ....T..A.-.................. AATTCGGCTGGCCGTCGATGTTAGCCATGATG A [29273] 29214 28 100.0 32 ............................ AGAAGATAACCGCACACCAGAGCCAGCACAAA 29154 28 92.9 32 ...........T.T.............. TGCCAGCGTTTTTTGTGTGCGCTTGTATTCCG 29094 28 92.9 32 ...........T.T.............. TTGCGAGGGGCCAGCACTTCGTCACGGATTTG 29034 28 92.9 32 ...........T.T.............. GCTCGGGCGGGTTTTTTATTGCTTGCGGTGTT 28974 28 92.9 32 ...........T.T.............. GATACGGATACGGTGATCCATGAAATCAACGT 28914 28 92.9 32 ...........T.T.............. ATCAAAAAATCAAGCAGATTCAAGACGCCGGT 28854 28 96.4 32 .............T.............. CGCAACTAGCCGAGGGCGAAACGCCAGCGGCT 28794 28 92.9 32 ....T........T.............. TGAGTCAAATTGCTTCATTCCTCGGATTGTTT 28734 28 96.4 32 ...........T................ GTCAGCAACACGCCTCACCGCGTTTTAGTTGT 28674 28 100.0 32 ............................ GACGCACGGGCGCATGAAATACCAATCTATTC 28614 28 100.0 32 ............................ AATCCAAATCATCGGGGTCTAGGTCGAACAGG 28554 28 100.0 32 ............................ TTTTCCACATAGTAGAAATCAAATCTCAAGCC 28494 28 100.0 32 ............................ TAAAGCCAACGGTTAAAACCGACCTGAATGCT 28434 28 100.0 33 ............................ AGTTGAAACCGCGGTATCGAGCGCGATCACGCC 28373 28 82.1 136 .............T.......G...GTG ACACAAGCCCCAGCACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGATTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGGCCGCTTGGGTAATAGATGGCTGACATTGCAATGGCGCTT 28209 28 67.9 0 ..C...CTA.......A....G...GTG | G [28205] ========== ====== ====== ====== ============================ ================================================================================================================================================== ================== 29 28 95.6 40 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CACTTATCGTCAACATGGTCACTTTTTGGCGGCTTTAAGCTTGTATTGTGTCTTACAATGGCTACGCATCACGCTCTTTGAACGCAGGGCCGTGTGCTTGGTTTTGCGACCACGTGTACGCGCACGCCATACTTTGAAACTACGCGGTTTTAATTCACGTCGCATTAAAGCAATCACATCATCTTGGCGTAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTCCTATCTTCCCACGCCATTTCAATGATCCGGTCTACGTCACCGGGCTCAGTCAGTCGCATAGTCTCCTCCTCGCATTGGACTAATAATTACGTATACGTTGAGCAACGCGGATCAATAAGTGGGGATGCCTAAACCCCTTATGACCCTCATTTTTTGGCTATTTAAAAATAAACAATAAATACAGCTAGTTAAGAAAAGCCGTTTTAAACAAGGGTAAAAGGCCATTTTTATCCTAACGGCCTGTTGTCACTGACGATTATTAAGTTATTCTATT # Right flank : ACACAAGCCCCAGCACTATGTTGGATAGGTGACATTGCTAACGGGCGCCTGGCTCGATTGGCGCTTATATCAAACGATGTAAATGCACCATGCTAGTCTTGATGTTGTGACTTATTAAACAATGAATATGTTGTAATTCCTTAAATGACAACTAATATGTTGTATATAGGCTGTAGTACAACATTAAAGTTGTTTGAGGGTGTGATGGTGTCACTAAAAGATATCGCGCGTGCATTGCAAGCGCGTCGCAAGTCACTTGGACTAGAGCAGTCTGACATGTACATGCGTATTGGCATGAAACAACAGCAGTACCAGCGAGTAGAGGCGGGGAGTGATGTCCGGCTATCGACTTTGCTGCGTGTGCTCGAAGGGCTCGACCTGACATTAACGCTTACGCCCAAAACGTCTCAGACTGTCGATGAGCCGGTAAACTTCGATCGTTATAAAGATGATGATAACGACGATCTCGACTTTTGGTTAGGGACGGAGCGCAGCGATGA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.37, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //