Array 1 853089-853421 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE387023.1 Calidithermus chliarophilus DSM 9957 MeichDRAFT_MCF.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 853089 29 100.0 30 ............................. ATCGTCGTGACCTGGGCGGGGGCGACGATC 853148 29 100.0 32 ............................. GCGGCGCGGGCCTGGAGGTCGCTAGGGTTAGC 853209 29 100.0 32 ............................. CGGCCCTCGACGCCGGCCACGGTGCGCTCGAC 853270 29 100.0 32 ............................. GCCACGCCCTCGCTCGACTGGCTCATCCTCAC 853331 29 100.0 32 ............................. CCCAAGTCCTTCGCCCGCACCATGGCCGTCAC 853392 29 82.8 0 ............G.G.........GGT.. | A [853419] ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GTTTTCCCCGCACACGCGGGGATGAACCG # Left flank : GCGCGGCGTCCTCACCGCCCCCGCCAAGCCCCTCGAGTCCGAGCGCTTTGCCGGGGCCGTGGACACGGTGGGCGGCGCGGTCCTGGCCGGCGTGCTGCCGCGCATCGCCTACGGCGGCAGCGTGGCGGCCTGCGGCAACGCGGGCGGGGCCAAGCTCGAGACCACCGTGTTCCCCTTCATCCTGCGCGGGGTCAACCTGCTGGGCGTGGAGTCGGTGATGTGCCCCCGCGAGCGCCGCCTGCGGGCCTGGGAGCGCCTGGCCCGGGACCTGCCCCTCAACCTCCTCGACGCCAGCGTCCAGACCGTGGACCTCGCCGCCGTGCCCGAACTCGCCCAGCAAATCCTCGCCGGGCAGGTGCGCGGCCGGATCGTGGTCGACCTAGGCGCCTGAAGCCCTGCTAGGATAGTTCCAGGCAAGCCTGCTTGCCGAGGGGAACTTGAAAGCTGGGCTCGAGGCACTTCCGGGGCTCGAGGGGCAGTTTTGCTCGGGAGGACCAAGT # Right flank : GACTGTAGGGGCGCAACGCGTTGCGCCCCTGCGCTGTTTTTAGGGCCTCTCGCTCAGATCGTGAAGCCCAGGGGGATCACCGTGACCCTGTCGCCTGCCTTGGCGCCCGCGCCGGCCTCGAGCACCACCAGGGCGTTGCCCTCGACCATCGAGCGCAGCACGCCGCTCGACTGGCTGCCGGTGCTCTCGACGGTGAAGCCCTGGGGGGTCCAGCGCAGGACGCCCCGGCGGTAGACCCGCTTGGAGGGGTTGGCGCCGAAGGCGGTGGCGGCGGTGGCCTGCACCCCGGCGTAAGGGGGGTCGCTGCGGCCGATCAGCTTGAACAGCAGCGGCCGGCCGAGGAGGTGGAAGACCACCATGCTCGAGACCGGGTTCCCCGGCAGCCCCAGCACCGGCAGCCCCCGGTAGTCGGCGAAGAGCACCGGCCCGCCGGGCTGCAGCTTGACCCGCCAGAAGTGGATGTTTCCCTCGCTCTCCAGCAGCCGCCGCACGAGGTCGTA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1087168-1085492 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE387023.1 Calidithermus chliarophilus DSM 9957 MeichDRAFT_MCF.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1087167 29 100.0 32 ............................. CCGGGGGCTTTCCGAGGGAAGACGATGACCGA 1087106 29 100.0 32 ............................. GCCTCCCTGAGCCTCAGGCTCTTGCGCAGACC 1087045 29 100.0 32 ............................. AAGACGCCCATCCTGTCCGAGCTCAAGAAGCT 1086984 29 100.0 31 ............................. CGGGCCTGGGACGGGCCGCGACGGGCCGCGC 1086924 29 100.0 32 ............................. TCCCCGGCCTTGTGGCGGAGGCCGTAGGCGTC 1086863 29 100.0 32 ............................. GAGTTTCTGCCAAGAAACACGTGGCTGAAACA 1086802 29 100.0 32 ............................. GCCACCGTGTTCCCCGCCGACAAGAGCCCCAC 1086741 29 100.0 32 ............................. CAGGGGCGTCCGGGAAAAAGGAGAAAGCCCAA 1086680 29 100.0 32 ............................. AGGCCAGCCGCGAGTACCTGGCCTCCGACGGC 1086619 29 100.0 32 ............................. CCCTTGCGCCCGTCGGGGGCGACGTACCTCGA 1086558 29 100.0 32 ............................. AGCACCACCGGGGCCACCGTGCCGAAGGAGGG 1086497 29 100.0 33 ............................. GAGGACCTATCTAGAGCCAACTGCTGGCGATGC 1086435 29 100.0 32 ............................. ACGAGTACGGCACCCCGCTGCTGCGCGTGGCC 1086374 29 96.6 32 ............................A GCTTGGTGGTGGAGGTGGTGATGTTGCCGACC 1086313 29 100.0 32 ............................. TAAATGATGACGGTTTCATTAGGCCCTCTTTC 1086252 29 100.0 32 ............................. GTGCTGGTGGCCCGCGAGCTGGCCCCCAGCCC 1086191 29 100.0 32 ............................. CCCGGCCAGACCCACTTCGCGTACACCTGGCA 1086130 29 100.0 32 ............................. ACCTCAATCTACCGGGGTAAGGCGTTCCGGCT 1086069 29 100.0 32 ............................. CCTCTAGACCCCAAGGAGAAAACCCATGGCTC 1086008 29 100.0 32 ............................. CGCGGCCTCCCCTGGCACGACCACGCGTGGCT 1085947 29 100.0 32 ............................. ATTGACAATGTTTTTTACGGACAATTCTTTAC 1085886 29 96.6 32 ............................A CCGGGCGCTGGCCCGACCCCTCCTGGCCCCGC 1085825 29 100.0 32 ............................. TGGGGTCAAAACTCGAGGGCGTACGCGCGTGC 1085764 29 100.0 32 ............................. GGGACGCGCTTGAGCACGTCCACTACGAAAGA 1085703 29 100.0 32 ............................. TGCGACCGGGGCACGCCCACGAGGGGCGAGCC 1085642 29 96.6 32 .............C............... GTTATGGCTATACGGAGGAGAAATGAAGACCA 1085581 29 100.0 32 ............................. CCCATCGCCTGCACCCACCGCTGCACCTGATC 1085520 29 82.8 0 ......................C.TTG.C | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTTTTCCCCGCGCACGCGGGGATGAACCG # Left flank : CCGCCGTGCTCATCGGGCTGCTGGGCTTCGCGGTCTACAGCGTGGTGGGCAACCTGGTGGCCTGGAACCTGCTGGGCCGGCTGCTCTTCCCCAACTGGCTGTGGGCCGCGCTCGCGCTGTGGCTAGGCCCCGCCGTGGCCGCGCTCAGCCTGGGCGTGACCGTGCTGGTCTCGGCCCGCGTGAACACCTTCCAGGAGGCCATGCAGCTCGGCGGGGTGATCGTGCTGCCGGTGGTGGCGCTGGTGATCGGGCAGGCCACCGGCGTGATGTACGTCAGCACCGGCCTAGTCCTGCTGATGGGCCTGGTGGTCTGGGCCCTCAACGCCCTGGTGCTCACCCTGGCCTTCCGCCTGTTCCGCCGCGACAACCTGGCCTCGAGGCTCTGAGCGCCCGCCCGATGCTAGGATAGGTCCATCGGCCCGAGGGGTTGGCGATCCTTGAAAACCGGCTCGAGACACTTCCGGGGGCTCGAGGGGCAGTTTTGCTCGATAGGACCAAGT # Right flank : CGCCTAAATCACCCCCGTAGGCACCAAGTACCAATACGCCTTGTTGAAGGCCATCTTCTCGTAGTGGTAGAGCCAGCTCGGGGCTGGGGGCTTGGGCGGGGTGTCGTAGTCGAAGGCCAGGATGCTGGCTTTGTCGTAGCCGGACTCGAGGAAGCACGTCACCTTGCCGTGGTAGGTGGCGTGGCGGGCGTCGGGTTCGCGTCCCTGGATGGCGGCAGCGATGCGCTCGGCGATCACGGGGGCCTCGAAGTGGGCGGTGGAGCCGGCTTTGGAGATGGGGAGGTCGGTGGTGTCGCCCAGGGCGTAGACGTTGGGGAAGCCGGGCACCTGGAGGGTGCCGCGGTCGGTCTTGACCCAGCCTTGCGCGTCGGCGATGGGGGAGTTCTCGAGGAACTTCGCGCCCCGGTGCGGGGGGATCATCACCAGCAGGTCGTAGGGGAGCTCGGTGCCCTCGAGGCTGTAGGCGATCTTCTTCTGGGGGTCCACGGACTCGAGGTTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2718190-2717616 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE387023.1 Calidithermus chliarophilus DSM 9957 MeichDRAFT_MCF.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2718189 29 100.0 32 ............................. CGCCGCCCCAGCCGCAGCGCCGCCACCCCGTG 2718128 29 100.0 31 ............................. TATGCAGCAGAGCGAAATGCGGAAGGAACAC 2718068 29 100.0 31 ............................. GCCAACTGGGGGCGCATCCTGCCCGGCGAAC 2718008 29 100.0 31 ............................. GGCAGCCACATCTTCTTGGCTGCGGCGTAAC 2717948 29 100.0 32 ............................. GAGCCCACTGGAATGGACGGCCGCAGTTTAGC 2717887 29 100.0 32 ............................. TTCTCGATGACGAAGTGGTGCTGGGGGATGCC 2717826 29 96.6 32 ............................C AGCTCGGCCTGCTGCTTGACGGTCCAGGCCGC 2717765 29 100.0 32 ............................. GCCCTCGATGCCCAGCGCAAGCGCCTCGAGGA 2717704 29 93.1 32 ....C...........T............ TAGGGCTCGATCTAGCCGAAGAGGTTGCTGAC 2717643 28 82.8 0 ...............A......C.G-..A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.2 32 GTTTTCCCCGCACACGCGGGGATGAACCG # Left flank : GGCGAACTTGAGCGCGGCCTCCACGGCCTCGGCGCCCGAGTTGCCGAAGAACACCATCGAGAGGTCGCCGGGGGTGATCTCGGCCAGCCGGTGGGCCAGGCGGGCCGTGGGCTCGGAGACCATCACCCGCACCGACATGGGCATGCGGTCGAGCTGGGCCTTGACCGCCTCGACCACCCGGGGGTGCCGGTGCCCCAGCGAGAGCGTGCCGTAGAGCCCCAAGAAGTCCAGGTACCGCTTGCCCTCGGTGTCCCACACGTAAACCCCTTCGGCGTGGGATTCCACCTTGTCGAGCCCGGTAAAGCGGAGCAGGCCCGCGAGCCCGGGGTTCACGTGCTTCTCGTACCAGTTGAAAGCTTCCATCAGGGCGATTCTAACACCGGGCCTCGAGCGCACCCCCGATGGCATAATGGCTTCAGGGTCCTACCCGAAGCGCACCTTGAAAACTCAGCCGACACTTCCGGGGGCTCGAGGGGCAGTTTTGCTTGGTGGAACCAAGT # Right flank : CACGCTTGGGGTGCGTGTGGTCATGCAACGCCGTAGGGGCGCAGCGCGCTGCGCCCCTACGCTCCTTTTGCCGGGCTTGCGGGTTTACTCCGGCCAAAGACCCAGGCCCTCGCGCTCGACGTGGTAGCCGGCGGCCTCGAGGCGCTGCACCACCTCGCGGCCGTGCTCGTCGTCGCGCACCTCGAGCACTAGTTCCACGCCTACCTTGCCCAGCGGGGCCAGCCAGAGGGCGCGGCGGTGGAAGATGTCCACGACGTTGGCCCCGGCCTCGGCCACCTTCTCGATGATGCGGGCCAGGGCGCCGGGGCGGTCTACCAGGGAGAGCTTGAGCAGGATGTAGCGGCCCTGGCGCACCAGCACCTGCTCGATGACGCGGGCCAGGAGGTTGCCGTCGATGTTGCCGCCGCACAGCACGGTGCAGACCACGTCGTCGGGGCGCACCGGGACTTTCCCGGCCAGCAGGGCGGCCATGCCCGCGGCGCCCGCGCCTTCGACCACCA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8592-7588 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE387027.1 Calidithermus chliarophilus DSM 9957 MeichDRAFT_MCF.7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8591 29 100.0 31 ............................. TGCGGTATAGTGCCGCGGGCTCGGCCGAATT 8531 29 100.0 31 ............................. TGCGGTATAGTGCCGCGGGCTCGGCCGAATT 8471 29 100.0 32 ............................. GTAGCGGCTCCCCGGCCTGGCCGGGTGCCACT 8410 29 100.0 32 ............................. GTGCCGTCGCCGTTGGAGACCGTCGAGACGGC 8349 29 100.0 32 ............................. CTGTAGGCGGCGCGGCTGTTGGGGGTGGGGGA 8288 29 100.0 31 ............................. GTGGCCCTGGCCGACCTCGAGGCCGCCATCC 8228 29 96.6 32 ...C......................... TCTGCGGCATCGGAGATAGAGGTTGACCTTAA 8167 29 100.0 32 ............................. GTAGAGGTGGTGCCTGAGCGTCACCGCTGGAC 8106 29 100.0 32 ............................. AGGACAAAGCGCGGCTGGAGTGGATGCTCCGG 8045 29 100.0 33 ............................. CAGGAGGAAAGCCATGCCTGAACCCGAAAACCC 7983 29 100.0 32 ............................. CCTGATCCACTCGTTCATCTCTACCTCCGCGC 7922 29 100.0 33 ............................. GCGGTGCAGGAGATCACCGAGGACTTCGCCGCG 7860 29 100.0 32 ............................. TTCCGCGCCCGCATGAAGAAGCTGGGCCAGGG 7799 29 100.0 32 ............................. CTCGCGTGGATGAGCGACCTGTCCTCCACCTA 7738 29 100.0 32 ............................. GCCTCGGGCTACATCAAGGACCTCAAGCTCGA 7677 29 100.0 32 ............................. GCCCGGCCTCGTCTTCATCAGACCGGCGGCAC 7616 29 93.1 0 ..........................T.A | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.4 32 GTTTTCCCCGCACACGCGGGGATGAACCG # Left flank : GCCGCTGTCCGAAACCGTCACCCTCCCCTTCCCGAGCGACTTCGAGCTCATCGGAAGGACGCTTCGGGAGGTTCTTGCTTCCAGGTGTGAGTAGTGGTGTTGTTTTGTGTGCTAAAGCGAGGCCTGCCCCCTCAAACCCCTACCCCCCCGTGCCGGTCTTGACGTCGTCGCCGTCCGCCACCGCCGCGGGCGGCGTGGGCACGCCCGCCACACCCCACGGCTGCGCCAGCGCGAGCAACGCCAGCACGACGCCCACGCAAACCCCTCCTTTCCCCAGTACCCGGAGCCACTTGCCGATACCACCCTTCGTGCGGAGCGCATGGATCTTTCCCATGGCCCGCAGGGTGCGCCCGGCACGCGACAGAACCTGTCGCGCCAGAGGCATGCCCGAGAGTGCTAGGATGACCAAAGCAACCGGGCACGTTGCACGGCACCTTGACAAGCAGACCTCGAGACACTTCCGGGGGCTCGAGGGGAAGTTTTATCCGTTAGAACCAAGT # Right flank : GGAGTGGTTCCTACAGCATGGGTAGTGGCCCACCCACATGGGCACCCGCGAGGAGTGCCCTCCCACCTAGGGCGGCAGGAATTTGGAGAGGGCGAGCCATTGACTCGCCCCTACGAAAGCGCTGGGCTTTAGGCGTTCGGCTTTAGGCGTTCGGCTTTAGGCGTTCGGCGTTTGACGTTCGGCGTTCGGCGTTCGGCGTTCGACACTCAGCTAACCGCTCCGAGCCACACTCAATTCGCCCGCTGGCTCTCGAGCCCCATGCTGCGAACCTCGAACACCGGCACCTCGTGGTAGAGGGGCGGCGGGACCCCCTCCGTCTGGACACGGCCTTCGTGGACGAGTTGCAGCAAGGCCTCGACCACCTGCGGGTCGAACTGGCTGCCCGCGTTGCGCTGGAGTTCGGCGAGCGCCTCGGGGACGGAACTCGGCTCCCGGTAGGGGCGGCGGCTGGTGAGCACCTCGAAGACGTCGGCGACGGCGAGGATGCGGCCGAAGAGGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 136102-131044 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE387025.1 Calidithermus chliarophilus DSM 9957 MeichDRAFT_MCF.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 136101 37 100.0 33 ..................................... AGTCCGGGGAGGATGTCAGTCCTCGATCTCGAA 136031 37 100.0 34 ..................................... TTAGGATCCTGCACTCCAGTAGGGGCAGTGATGT 135960 37 100.0 33 ..................................... AGCCCTCAGCCCTGGATCCGCCCAGGAGCAATC 135890 37 100.0 33 ..................................... TCGGAGGCCCACTGGTGCGCCTGGTGGATCCAC 135820 37 100.0 36 ..................................... TGAGCCACCTGGCGCGCGTGCCCCGCCCACGCTACA 135747 37 100.0 36 ..................................... GGACGCCGGGACAGGCCGGTAGTGCTCGAGCGGACC 135674 37 100.0 34 ..................................... GCGATGCCCAGCCCGTCCAGCCCGCCCGGGCGAG 135603 37 100.0 36 ..................................... CTATGCCAATAGTCTCCGTCAACCTCGAGTGCGGTA 135530 37 100.0 33 ..................................... GCCGAGTGGGAGTGGCGGGAGGCCTACCGCGAG 135460 37 100.0 36 ..................................... TGGAGGCCTCGGCGAGGGGCTCGCGGGTCCAGGGGC 135387 37 100.0 35 ..................................... CGCTACCAGCAGGGCAGCCGTGGTTCAGGGACCGT 135315 37 100.0 38 ..................................... TCGGCCCGCTCGCTGAGGCGCTTGACCAGCGGCTCCAC 135240 37 100.0 32 ..................................... GAGCCGGTGGACCCCGCCCCCATCCTCGCCAG 135171 37 100.0 35 ..................................... CGCCCCCAAGCGGAAGAAGTAGCAGTAGAGGTGGA 135099 37 100.0 34 ..................................... CGCCCCCAAGCGGAAGAAGTAGCAGTAGAGGTGG 135028 37 100.0 35 ..................................... ACGCTCCTTCATGTCCAGTCGGTCGGGCCGCGCAG 134956 37 100.0 30 ..................................... TGCCCCGCGAGGGTGAGCGCCCCGTCCGGC 134889 37 100.0 36 ..................................... GACTTCGCCACCGCCGGGCACAAGGTCTCCCCCCGC 134816 37 100.0 34 ..................................... GTTGTCTCGCTGGTACGCCATGTAGAGGACGTGC 134745 37 100.0 38 ..................................... TAGGAGGCCCCATGAACTCGATCAAGACCCCCGCCCAG 134670 37 100.0 35 ..................................... TGCAGGCCGGCGGGGTTCACCGCCTCGAGCCAGCG 134598 37 100.0 35 ..................................... TTAATGCGGCAACCCCTGAGCTTATCCGTCACGGT 134526 37 100.0 37 ..................................... TCGACGTGGGCGATGTAGCCGGGGTCGGAGCCGCCCG 134452 37 100.0 33 ..................................... GCCACGGTGGCTGCGGGGATGCCCTCGTAGTAG 134382 37 100.0 34 ..................................... CGGTGAGTATCCCGCCCGCTCAGCCTCAGCGATG 134311 37 100.0 40 ..................................... TAGGGCTAGCCGATGAGGGCTAGCCCTACTAGAGAGGGTT 134234 37 100.0 33 ..................................... TTCCGTATGGTTTTGTTGGCGCTAGCGCTGGAG 134164 37 100.0 35 ..................................... ATGATCACCACTCCTTTGCCCTGGCTCATCAGGCT 134092 37 100.0 37 ..................................... ACGGCCTTGAGCAATTCGGCTTCAGCCCTTTCCGGCC 134018 37 100.0 33 ..................................... GAGGACGCCACGCCCCAGGCCACCCAGGAGCGC 133948 37 100.0 34 ..................................... GAGCAGGTACAGCTCGGCGACGCCGTGGAGGCGC 133877 37 100.0 36 ..................................... CCGGAGAGGGAGCCCGCGTCGCCCCGCTTACGGACC 133804 37 100.0 34 ..................................... ATCTGGAGTGTCGTGTTCGGGCAGGTCGTGGTTT 133733 37 100.0 35 ..................................... GACTTCCTGAAAGAAATGCTGGCCCGTGGCTACAA 133661 37 100.0 33 ..................................... CCCAGGAGCCACCAGCTCACCCCGAGAACCCCC 133591 37 100.0 36 ..................................... GCGATCGGAGGGCAGCGGCGAGGAGGAGAGCAATGG 133518 37 100.0 34 ..................................... CTCATCGGGGTTTTCTGGTTCGTCCGGCAGCCCC 133447 37 100.0 36 ..................................... CCTTCTAAAGCAGCCTTCCTGAGGTAGGAGAGCTGA 133374 37 100.0 34 ..................................... GTGGGGTATTGCATCCTCCGTATCAGAACGGACA 133303 37 100.0 34 ..................................... TCATAGAAGGGGGTGACCAAGTGGGGGGCTTACC 133232 37 100.0 36 ..................................... CGCCTAACGTTCATGTTTATCGGAACATCCTGCTGG 133159 37 100.0 38 ..................................... TGATTATGGGTGGGATGAGACCAGGTTCGAACTTGCTG 133084 37 100.0 36 ..................................... CAGCAGCGCCGCATCCGCACCCTCGAGACCCTCCTG 133011 37 100.0 38 ..................................... TTGTTCGAACGCCGATTACTTGAGGAGGTGAAAGCTAA 132936 37 100.0 36 ..................................... CCGTGTGCCCCACGGTACGGAGTTCGGTCGTTGCAC 132863 37 100.0 35 ..................................... CAAACTCATCGAGACGCTCGAGGCCATGCCCGAAG 132791 37 100.0 34 ..................................... TTTGGAACCCCAAGGAGCTGCCCGAGCCGTGAGC 132720 37 100.0 37 ..................................... CTACCGCGCGGTACTCTCGATTAACGGCAACATCACC 132646 37 100.0 35 ..................................... ATCACGCCCCGCCACCAAAACTCACCCTGGTCGTG 132574 37 100.0 34 ..................................... CATGCCGACGCCGACCCCTTGGCCTGGATGGAGG 132503 37 100.0 33 ..................................... TCCAGCTCGCCCTCGAGGGCCTTGGCCTTCTTC 132433 37 100.0 37 ..................................... TACGACGAGTGGCTGCAGGCGCTCTTCCCCAACCCCG 132359 37 100.0 31 ..................................... ATGCGCTCGGCGGCGATGGCGACCGAGCGGG 132291 37 100.0 35 ..................................... AGCGCGGCCGCCCCGGTGTCGGTGGGGGCCACCAG 132219 37 100.0 34 ..................................... AGGTGCGCGGGCAGCAGCACCGGCGCCTCGGCGG 132148 37 100.0 34 ..................................... TTCGTCGACGCCGGCACCTACGCGGTCCAGGTCA 132077 37 100.0 37 ..................................... CAGGGTCATGAACTCGAACTCGGCCTCGGTTTCGGTC 132003 37 100.0 33 ..................................... TTTGGCCATATCAGCATGCATGTCAGCATCAGG 131933 37 100.0 34 ..................................... GCCGCCGAGCTGATGGCCGTGCTCAAGCCCCGGC 131862 37 100.0 32 ..................................... CCAAAATGGGATTGTTGGGTATGATCTGCTTG 131793 37 100.0 34 ..................................... CAGCGGGCCAGGGGGTAGGCCACGCGGCGCTTGT 131722 37 100.0 33 ..................................... ACCCTCCCCGGTTCGGCCCTCGCCACCGACCCC 131652 37 100.0 35 ..................................... CGCGCCGAGGGCTCGCGGCGGAGCGTGGTCGCGGG 131580 37 100.0 35 ..................................... GGGGGTGCCAGGGGAGGAGATCGCCATAGCCTCCT 131508 37 100.0 35 ..................................... TGATCCCGTGGCTGAGGCCACAGGGGGGAAAATAT 131436 37 100.0 31 ..................................... TCCAGCCCATCGGCCAGAGACTCGCCAACAT 131368 37 100.0 32 ..................................... ATGCAGGTTCGCCACACCACCGGCTCCGGCCG 131299 37 100.0 36 ..................................... ACCTTGAAGACGTTGGGTAAAAATCGCGGCTACGTC 131226 37 100.0 35 ..................................... GAAGGGCGGCCAGCCGAAAAAGGCCCCCCCGGCGG 131154 37 100.0 35 ..................................... AGGGTCAGGCGATTGCTGACCGCCATCGGCAGGGG 131082 37 81.1 0 ......................T...T..C.G.G.TT | T,A [131052,131056] ========== ====== ====== ====== ===================================== ======================================== ================== 71 37 99.7 35 GTTGCAGTGGGCAATTAAGCCCACTGAGGATTGAAAC # Left flank : TGGGCAAGTAGGAGTGTACCGATGGAACGGCTCGACATCCTGGTCACCTACGACGTCAACACCGTCTCGGAGGAGGGCAAAGCGCGGCTGGCCCGGGTGGCTAAGGTCTGCAAGAACTACGGCCAGCGCGTCCAGATGTCGGTTTTCGAGTGCCGCGTCACCCGGGCTCAGCTCGAGGAGCTCGAGGCCAAGCTGCTCAAGGTGATCGAGCCCGACAAGGACAGCCTCCGCATCTACACCCTCCCAGGCGGGCGGGAAAAATGCTTGAGGACCCACGGGCAAGACCGGTATCAGGACTTCGATGACCCCCTAGTCCTTTAGCGCGAACCCCTAGTAGGTGCGAAAACCCGGGGGGTTCGCGCAAAGCCATTTTGTGGCTTGGGTACTTTGAAAACTTGGCTATACTGGGAACCACCTCACACCGCGGAGGTGGCCTTGGCTCCCAGGTTCGCGCGGTACTGGCAATAAATGCAGTCCTGCACGTATGGGTTTTTGAGGCC # Right flank : AAGACAGATAGCCAAGCTTTAGAGCTCCTCTCCTTTACACTCGAGCCATGCCTCCCTCCCACGATGAGGCAAAAGCCTTGCTTGTTCGGCTGCGGTCGGGCGACCCGACCGCGCCTTCAGATTTAGTCGTGGCTTACTTGGACGATCTTGCCTGCTGGCTTCAAGGCCGGAACCCAGCCGTAAGTGCTGAAGACTGCCTTACTGCTGCCGAGGATGCTTTGCTGGCTTTGATTAAAAACCCTACTAGCTACGACCCGAAGCGAAGCTCGCTCCTTGGATACCTTCGAATGTCCGCTTCTGGTGACCTCAAAAACCGGTGGAGGGCAGAACGACGGCATGTTTGGCGCAAGACTGGCCTCGAGGATGTCGAACTTTCACCGGGAGAGGGGAAATACCTAAGGGATGGGGAGGCTGACCCGGCTCAGCGGCTGGAAGTGAAGGAGTGGAGCCTGATGTCTGCAAAGGTGGTAGGCACTTTGCGGGCGAAGCTGAGCCTCGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTGGGCAATTAAGCCCACTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.20,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 147494-150027 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE387025.1 Calidithermus chliarophilus DSM 9957 MeichDRAFT_MCF.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 147494 37 100.0 34 ..................................... TCGCGGCGATAGGGCTCGATGCGGATTTGCAGCG 147565 37 100.0 37 ..................................... AGGCCCGCTCCGCCCAACTCGAGGCCGAGGGCACCCC 147639 37 100.0 34 ..................................... CCCCTCGAGGTGGCCCCGTGAGCCCGCTCGAGCG 147710 37 100.0 37 ..................................... GAGGCCACCATCGCCGTCGACCGCAACGACATTGAGG 147784 37 100.0 34 ..................................... CAGCCCTCGGTCCAGGGCGGCACCAGCGGCGTCG 147855 37 100.0 34 ..................................... AACATCCGCCAGGCCATCGGCCGCCGCGTGGCGC 147926 37 100.0 31 ..................................... TCCAGGGCCATCCGGGCGGCCATCTCATCGA 147994 37 100.0 33 ..................................... CCGTGGTCAACCCGGCCAACGTGCGTGAGGTGA 148064 37 100.0 34 ..................................... GCGATGCCCAACCTGCCCAGCCCATCCAGGCGAG 148135 37 100.0 36 ..................................... AGCAAGGACAAGGGCAAGGCCCTGCTGACCTACTAC 148208 37 100.0 35 ..................................... GGGGTGATGCTCCGGGAGGAGTCCCAGGAGTTCCC 148280 37 100.0 35 ..................................... GGCCACGCTGAAGGAGGTGGCGGGGACGGAGCGCG 148352 37 100.0 36 ..................................... ATCCCCGACCTCGAGCCCATCCGGCTCTCAGACCTT 148425 37 100.0 36 ..................................... AGCTCCTAGCGCCCGGCGCACGAACCCGCGATACCC 148498 37 100.0 32 ..................................... ACCGCCTACCTCGACGCCCGCATCGTGGGGGC 148567 37 100.0 34 ..................................... CAGTCCAGCGAGTACTACCGGGTTTGGGACATCA 148638 37 100.0 34 ..................................... ATGAGTTCACCTAGAGCTCCAGGTAACTCGAAGA 148709 37 100.0 38 ..................................... TGCCACGGCCACCTCCCCGATCGCCTCGTAGGTGGCGA 148784 37 100.0 36 ..................................... CGCTGCGCCAACACCAACGAGGCCAGCCTCTCCTAG 148857 37 100.0 33 ..................................... TTCAACGGCATCGCCCAGGGGGAGATGGTCACC 148927 37 100.0 35 ..................................... CAGCGGATGACGAGTTGCGCGTAGGGGATGCTCAT 148999 37 100.0 35 ..................................... GTGAGTCGGGCCCGCTCCCGCTCGGCTTACCTGGA 149071 37 100.0 31 ..................................... CCGTAGACGGGCTTGTGAATGTCCCCGGCGA 149139 37 100.0 33 ..................................... CTGGGCATCAGCGGCCCCCTCGAGGGCGGCGGT 149209 37 100.0 32 ..................................... AACGGGACCGCCGGCAACAGCCTCCAGGGCAG 149278 37 100.0 32 ..................................... CTCCTCCCGCCACACATGCACCGGCAGGTTGA 149347 37 100.0 35 ..................................... ATGAGCTGGACCAGCAGCCCCAGGACCGGCAGGAA 149419 37 100.0 33 ..................................... GACGTGCAGGGCTGGCGGTTTTTCGCCGGGCAC 149489 37 100.0 34 ..................................... CTGATCGACGACGAGTTTTCCGGCGTGGGGATGG 149560 37 100.0 35 ..................................... TCGCAGGCCGAGGTCTGCGACGCCTACGACTGCGG 149632 37 100.0 34 ..................................... CTGGCCTGGGCGCGGATGGAGAAGGCGGCCCTGG 149703 37 100.0 34 ..................................... CCCCGGCGCACGTCGCGGGGCGGGCGGGCCTGGG 149774 37 100.0 34 ..................................... TGCGGTAGAACAGCCAGAAGGCCAGCAGGCCCAC 149845 37 100.0 35 ..................................... ATCGAGTACGTGGGCCAGGGCTTCGCCCTCGGCCT 149917 37 100.0 37 ..................................... TCTTGTCCCCCTTGGCTACCCTGCCGGGTGCGGGGAT 149991 37 97.3 0 ..................................T.. | ========== ====== ====== ====== ===================================== ====================================== ================== 36 37 99.9 34 GTTGCAGTGGGCTTAAATGCTCACTGAGGATTGAAAC # Left flank : TTTACAAACCTTAGGGGAGGCACACGGCCTCCCCTAACCCAACCTCCGCTAGCCGCCAGTACCAATCTTGGGGTCATCGCCATCGGCGATCACCTGGGGGTGGCTTCCTACCGGCTGGGTCGGGGTCAACAGCGAGCCCGCCGACAGGAACAGCACCAGAAGGAAACCCAAACCTCCTTTCACGAGAAGAGAGCGCTTAATGCCGAGGTTGCCGACCGTTCGGGTGAGGTATTTGTCTCTCACGCCGCACAGGGTCGGGCCGAGGCGCGCATGATCTTTGCGCGGTGCTCCAGGACAGCCAACTTCACCTGCACCGCTAGCGCGAACCCCAAGCAAGGACGAAAACACCGGGGGGTTCGCGCAAGCCGAATTCGGCCCTTCAGTACGTCATAAACCCGGCAAGCAGCTTGAGCCTAATACTGCCGCCGGCTACCCTTCACAACAGGGTTCGCGCGTTGAAGCCCAACTATCCGCCTCACGACGCTGCTAAAATGGACCCC # Right flank : CCCTTTCATGCTGATGCCTTCGCCCTCGGCCACCAGTGGAAGAGGGTGTGCCGCCGCAGGGTCTTTGGGTCCCCCTCCAGGACCCGGCACCGCTCGGCCACCCCCTCCATCATCTCCTGCAGGTCCTGGAAGTACCGGTTCGCCACCGCCTCGTTCACCAAAGGCCACACCCGCTCCACCGGTTGCAGCTCGGGGCTGTAGGGGGGCAGAAAGACCAGACGTATCCCTTCAGGCACCTCCACCTTGGGGGAGACGTGCCACCCCGCCCGGTCCAGCACCACCCAGGCCTCCTCTTCCTCCCGCAAGGCGGCCCTGAACTCCCGCAGCACCCAGCCCATCACCTCGGTGTCCATCCCGTCTACCAGCAGGCTCAGGTTCTCTCCCGTCTCCGGTTCCACGAAGGTGCACACGTAGAACCACCGGTACCGGTGTGCCCCCACCGCCAAAGGCCGCTTCCCCCGCCGGGTCCACACCCGCCGGTACACGGGCCTAAGCCCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTGGGCTTAAATGCTCACTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 151142-154389 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE387025.1 Calidithermus chliarophilus DSM 9957 MeichDRAFT_MCF.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 151142 37 100.0 33 ..................................... TTGGTGAAGGCCCTCCCGCTCGGATGGTCGGTG 151212 37 100.0 34 ..................................... TACCTGGCCCTCACGGTCAACCGTTACGGCTTCT 151283 37 100.0 34 ..................................... TGCGTGGTCTACAGCCGCGACGTGGACCTCACCG 151354 37 100.0 36 ..................................... GTCCCAGGCCCTCGCCACCGCCGTGGACTCCTACAT 151427 37 100.0 32 ..................................... ATGAACCCGTAGCCGCCCGGCCCCGTGACCAC 151496 37 100.0 35 ..................................... GTATAGGTGTCGCGGTTGTAGGCCCAGCGGCCCGC 151568 37 100.0 37 ..................................... GTTGATGAATACCTCATAGACCTCAACGCCACCGCCG 151642 37 100.0 35 ..................................... CCCTCGAGCAGCTTGCGGCCGCTGCTGCCGAGCTG 151714 37 100.0 37 ..................................... CTCCTCCACCAGCGGCGCCCCCCGGGCCACCTCATCC 151788 37 100.0 36 ..................................... ACCCGCACCGGCAGCGGGGCCTGCCGTGCATGGATG 151861 37 100.0 33 ..................................... TACGCCGCGCTCGAGGCCCACGCCCCCCTGACG 151931 37 100.0 34 ..................................... TGCTTCGCCACCCAGCTCAACCGCCGCCCCTCCG 152002 37 100.0 34 ..................................... CAGCCGAGCGCGGTGGAGGAGTCGAACACGACGG 152073 37 100.0 35 ..................................... TTGTTCGCGCCGCCCGCCGTACTGGGCAGGGCCGA 152145 37 100.0 34 ..................................... TGCTCCGGGCGGGCCTTGGGGTGGATGACCTTCC 152216 37 100.0 38 ..................................... GGCGGGGGGTGGGGGCCGTGAAGGCGGCGCTCGAGTGG 152291 37 100.0 33 ..................................... TTGGCGACCTCGTTGGTGCCCAGCGCGCCGCCG 152361 37 100.0 36 ..................................... CTGCCGACGCGAGCAGCCTGACGGGGAGGACCCGCC 152434 37 100.0 34 ..................................... GGGCGAGAGCGGGCCGAGGAAGCAGTCCACGTGG 152505 37 100.0 32 ..................................... TGCATCCCGACCCCGACCTCAACCCCGACTTC 152574 37 100.0 33 ..................................... AAGAATAGGCTCGGCGTGTGCTTGCTGGGGGGG 152644 37 100.0 34 ..................................... TTGCGGTAGGTTCCACGGGCACCGTCAACCCCCC 152715 37 100.0 34 ..................................... GCCAAGAAGCTGCGCGAGAGCAACGTCCCCGACG 152786 37 100.0 31 ..................................... CTCGAAGGTGGCCGGGCCATCGTGGACGGGA 152854 37 100.0 33 ..................................... TCATAGCGCACCCGGACGGTCATCTCACCCTCG 152924 37 100.0 35 ..................................... CCCTGGATGACGTTGATGGAGTTGAGGGCCTCCAT 152996 37 100.0 33 ..................................... AAGATCATCGCCAATCGGCGGGTGGTCAACAAG 153066 37 100.0 37 ..................................... GAGCGCACGATGGCCGCGTGGCGGGACACGATGCGGG 153140 37 100.0 35 ..................................... AAGGGGGGTAAGCCGGTGCTCTGCCCTTGTGCCAG 153212 37 100.0 32 ..................................... CTGGAGTGGCTCTTCGGCCAGGGTTACGCCAT 153281 37 100.0 36 ..................................... GGGCTCGGGGATAAAGGGGCGGGCGGGCATCCGCAC 153354 37 100.0 32 ..................................... ACGAAGGCCCCCGGTATCGGCAGGCGGAGGGG 153423 37 100.0 33 ..................................... TCCTCGAACAACGTCCCCAACACCGCCGGGGCG 153493 37 100.0 32 ..................................... CACATCCGCCGCGCCAGCGCCACCAGCTCCTC 153562 37 100.0 35 ..................................... GTCGGGGTAGAGCGGAAGAGGACTCTACAGGGCGC 153634 37 100.0 37 ..................................... CCTCCGTCTCGTCGTAGTGGCGAAGCTGGACGCTCGG 153708 37 100.0 36 ..................................... ACCGCGAGCTACCTCCTGGGGCTCGGCACCAGCCCG 153781 37 100.0 35 ..................................... CGCAACTCGCGCAGGCGGGAAGGGTCGTTCCCCTC 153853 37 100.0 31 ..................................... ATCGATATCGAGGGCGAAGTCCTCGGGGATC 153921 37 100.0 35 ..................................... TATCTGCCCCTCAACAGCGCCCCCGCCTCAAGCTA 153993 37 100.0 35 ..................................... TCGACCCACAGTGCCAGGGTGCCCTCGAGGTTGAT 154065 37 100.0 36 ..................................... CGCAAGACCTACCTGCGGGGGAGATTCCGCCTCGAG 154138 37 100.0 36 ..................................... GCACGGACATGATTAGCGGCTTGCAGGGGCATGTGA 154211 37 100.0 34 ..................................... TGCCACGGCCACCTCCCCGTGGCGAACACGCCGT 154282 37 100.0 34 ..................................... GCACTGTGCAGGGACATGGGAGGGGACGGGCTAC 154353 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 46 37 100.0 34 GTTGCAGTGGGCTTAAATGCTCACTGAGGATTGAAAC # Left flank : GCCGGGGCCTTGGGGTGCGCAGGGAAAAGCCCATCTCGTGCAAGAGGCGGTAGATGGGATAGAGGGAGACCTTCTTCCCCAGTTCCCGCTCCACCCAGTCCCGCAGCTTGGGACCCGTCCATAGGCCCCCGTCGGGAGGAGGACCCTGCAAAGCCTCCAGGACCCTCGCCTGCTCCTCGGGGGTCAGCTTGGGCCTCTGCCCTGGGTTATGGTGCCGCCTGTCTTTTAGGGCCTCGGGGCCTTCCTGGTGGTAGCGCCTCACCGTTGCCTGCACCCAGCGGGAGCTGTTCAAGGTGATCCTGGCGATCTCCTTGGCGGTGAGCCCCCGCTTGGCGTGGTAGACCGCCAGGAAGCGGGTCCTTTCTATCGGATCCTTGGCCTTCTTGACCCTCCGCCATAGCTCGCTCAAGGTTAGATGGTCGGCTACGGTCATAAACGAAGGATACAACAGGAAAGGGTATGAAACAGCAGCTCCTCGAGGTCCACCCCGAACAGCGCGT # Right flank : CTTGGATGCTGAAACCAATCTTGCTATCCTCAGGGTATACTTTGCTTATCCCACACAGCGTTAGCGTTCCTCCCGCCTCAATCCTTCCGAGGCGGTCCGGAGGAACCTGCGACGACAAAAGCTCAACAGGAGGAAGTGTGAACGAACGCCATGCTAGCAATGCTCCAGCCCTCGGCCGTCCCCTGCCCGGGGTCTCCCTCACCCCGCCCTGGCGCGGGAGCGGCTCGAGCCCGGCCAGCATGAGAGGGGGCAGAAATGCTGAGTGAGCGCTTCAGAGAGGCCCTGGGCCTGGCCTTCGAGCTGCACAAGGACCAGAGGCGCAAGGGCACCGACGTCCCGTACCTCGCGCACCTCCTGGCCGTGAGCGCGATCGTCCTGGAGCACGGCGGGGGCGAGGACGAGGCCATCGCCGCCCTGCTGCACGACGCCGCCGAGGACCAGGGCGGGAGGGAGACCCTCGAGCGCATCCGCCGGCGGTTCGGGGAGCGGGTGGCGGCCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTGGGCTTAAATGCTCACTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 4 207976-206434 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE387025.1 Calidithermus chliarophilus DSM 9957 MeichDRAFT_MCF.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 207975 37 100.0 35 ..................................... ATCACCCTCTCGCCCGACGGCTCCGACGCCCGCCG 207903 37 100.0 36 ..................................... ATGAGCCGACTGAGGGCTTCCTCGCTCGAAGCGACG 207830 37 100.0 35 ..................................... GAAGTTCTGCCAGCGCCAGTCCACCTGCACCCCGG 207758 37 100.0 36 ..................................... CTCAGCCACATCGGCTACTGCTCCTGGAAAAACGGT 207685 37 100.0 37 ..................................... GGCACCAACCAGGAGGTGCTGGGGCCGGATTACCTGG 207611 37 100.0 36 ..................................... TCCGGGGGGACCAGCGCCACCTGGTCGGACATGCCG 207538 37 100.0 36 ..................................... GTCTCCACCGCCCACAGGGCCAAGGGGCGGGAGTGG 207465 37 100.0 35 ..................................... ATGAGGGTGAGGCCCCGGACCGCGGGCGCGGAGGG 207393 37 100.0 32 ..................................... AACGCCCTCGAGGACGAGCGCATCGAGCGACT 207324 37 100.0 35 ..................................... CTCTGAGCGAGGGCCTCCTCCAGGAAGTGCTCCAG 207252 37 100.0 34 ..................................... ATCAAATGGCCCCTTAGGGGAATGCTGGCCGGGG 207181 37 100.0 35 ..................................... TTCGACTTCAAGTTTCCCGACCCCGGCGGGCTAAC 207109 37 100.0 35 ..................................... CTCCTTCTCGGCGGCGGCGTCGAGGCCGGCCTTGG 207037 37 100.0 33 ..................................... TTCCGGGACAAAGGGGATCAGGCCATCGTGCTG 206967 37 100.0 34 ..................................... CTGTACCTGGCCTTCAACCGCTCGGTGGCGGAGG 206896 37 100.0 32 ..................................... TCGGGCGTGGGGTTGTGGGGTTCTTTTCCGTG 206827 37 100.0 37 ..................................... CAGACCGACGCCCGCTTCGCCGCGCCGAGCCTGGCCG 206753 37 100.0 35 ..................................... CAGCAGCAGCGCCGAGTCGCTGGCGAAAAAACTCC 206681 37 100.0 36 ..................................... CTAACCTCGTCACGGTGTTCCCGCCCCTGGAGGGAG 206608 37 97.3 32 C.................................... CTGTTGGCCTTCTCCGCCGCGTAGCCGTAGGC 206539 37 100.0 32 ..................................... AGTACGTAGGCCAGCAGGCCGAACACCAGCCC 206470 37 81.1 0 ...............G............A.CA.GCT. | ========== ====== ====== ====== ===================================== ===================================== ================== 22 37 99.0 35 GGGCTTAAGCTCGAGATACTCCGTAGGAGATTGAAAC # Left flank : ACGACACCCCGTCCGACTCCAGGCGGGCCAAGCTCGCCCGCCTGCTCAAAGGCTTCGGCGAACGTCGGCAGTTCAGCGTCTTCGAGTGCCGGCTCCGCCGCGAGCACTGGGCGCTGCTCAAGGCCAGGATCGAGAACTTGGTGGACAAGGACGAGGACGTGCTGGCCGTCTACTTCCTCCCCCCTGAGGCCGTGGGGCGCACCTACCGCATCGGGCACGAGGCCGTCAAGCGCTTGGACGAGCCCGAGTTCATCTAGAGCCCTCGAGCGCGAACGCCGCTTCACCCGCCCCCGGCCCCCGGGCCGGGGTTTTTCCCGTCCCCGGCAGGCCAAATTCCATCTCGAGTGCCCGCCTCGGTCAGGCGTCGTGTGCGTCACCGTGCCCGACGGCAAAAACGGCCCCTCGAGGTTCCGCGAGGCGCTGGCTCGAGGGCGTGCTCGAGGTTGCGTGCGAATTCAGGCTCGAGAAGGCCGACCTGCATTTGCCTTTTTCGGGGGGCC # Right flank : TCTAGAAACCAGCCTTAGAGCTTCCCGTACCCCATCCGGTGGCTCTCCCCTACTCGGCCATGCGCCTCACACCGCTCGAAGAGCTGCTCGAGCGCTTCTATCAGGAGATCAGCCGAAACAGCACCTGGACGGAGCTGACCGCGCGCTTCACCAACGAGCAGCTCCAGACCATCCTCGAGTTCATCAGCGCGAGCACCCGGATCATGCAGCAGGAGACGGCCAAGCTGCGCGAGGGCAACCCCGCCGCGAAGTAGCGGGCCTCCTCGGCGTGGGTCGTGCGGGGTGCGGCCGGCCCCGCAGGCACGTCCCCCGTCCTGCCGCGTCCCCGTCGCCCTCCGGCCGCCCTGACCGGGGGCCCTATTGACAACCCGGGGAGCAGGGTCTATATTCAAGGCACAAAAACGATTTCGGAAACGATTTTGGCACGTCACCCACGCTACGTCGCCGAAAGGGGGTCATGAACACACGCGTCTCCATCCAGGATGTGGCCCAGCTCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCTTAAGCTCGAGATACTCCGTAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 5 220423-222097 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE387025.1 Calidithermus chliarophilus DSM 9957 MeichDRAFT_MCF.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 220423 36 100.0 33 .................................... TCGGCGTAGACCTCGCCCTCGGGCTGGTGCATC 220492 36 100.0 34 .................................... TGAGCGCGCGGGCCCCCCACTGGACCGAGGAGGA 220562 36 100.0 36 .................................... GGGCTGGGGGAGGACGTGGCGCAGGATGCGCTCGCC 220634 36 100.0 40 .................................... CTCAAGAGCGGCAGCCGCAGGGCCGGGGTGTACCGTGGGC 220710 36 100.0 34 .................................... ATGGAGGGGTAGCGCTGGCCGGGCCCGTCGCCGG 220780 36 100.0 34 .................................... ATGGAGGGGTAGCGCTGGCCGGGCCCGTCGCCGG 220850 36 100.0 34 .................................... CGGTTGGGGCTGGCGTTGAGCAGGGCGCGGATCT 220920 36 100.0 32 .................................... ATCGTGCACTTGGACGAGCTGGAGTTCGTGGA 220988 36 100.0 37 .................................... TGGCGGCTGTGGCGGCTGTACAACCGCATCGGCGTCT 221061 36 100.0 36 .................................... ACAGCCTGACCGAACGGCCCGGACTGTCTGCGAATC 221133 36 100.0 35 .................................... GATCTCGGGCGGCTCGAAGCGCACCGCCCCGATGA 221204 36 100.0 38 .................................... ATGATGAAAAACGTGCGGTCGCCGTCTGTCGGCCAGCC 221278 36 100.0 36 .................................... CAGCTGCAAAAGGGCCTGGACGGGTTGCGCGAGGAG 221350 36 100.0 36 .................................... CTGCGGCTGATGGAGCGCATCGGCGCGCGGCTGGCG 221422 36 100.0 36 .................................... ATATACACTAGACAAACTTTGGCCGGCGGCGTGCTC 221494 36 100.0 33 .................................... AGGTACTCGACGGCCTTGCCGTGCTCGGCAAGG 221563 36 100.0 34 .................................... CTGGTCCATGGCGATGGGCACGGTGGAGGCGTTG 221633 36 100.0 36 .................................... CTGATCCTGGCCCGCGACCCCGGCGAGCGCGACCGG 221705 36 100.0 35 .................................... GGGTGCAAGGGCTGGGACCTGCCCGAGGACACCCT 221776 36 100.0 38 .................................... CGTCCCCAGCGTGGAGGAGTGGTTCCGGCACATAGAAC 221850 36 100.0 35 .................................... TTCTCCGACCCCGCCATCGCCCCCCACGGCCCCGC 221921 36 100.0 34 .................................... ATCCAGGGCGGCAGGAAGAGCTCGAGCAGGCCGC 221991 36 100.0 35 .................................... TCCCGCACCCAGGCCACCCCGTCGGCCTCGAGCTT 222062 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== ======================================== ================== 24 36 99.9 35 GTTGCAAAGGCGCTTAACCTCGTAGAGGATTGAAAC # Left flank : AGTTGCCGGAGGTTGCGTCGCACGCTCTCCTCGTCTACCTGGATGCCAAACTCCAGGGCGATGGCTTCCGTCAACTGCCGCGCATTCCAACAGCGGTCTTCCGCCAGCTTATCCCGCATAAACTGCAAGGCCTCTGCGTGGAGTTTGCGCCGATTGCCTTTCTGGGGACGATCCGCCAGTCCCTCGAACTTCCGGCTTACCCAGGCATTCAGCGCTGCGCCAACCGTCCGCACGTGGCATCCGACATACCCGGCAATCCGGCTCATCTCCCAACGCTGGTTCGACAACCGAATCATCTGACTGCGCAGCCTCACCTTCTTGTTCATGTGGGGGCTTTGCTCGATAGCCCGCAGTTGTTCATCCTCTTCTTGGCTCAACTCAATGTACCGAAAGTTTCCCACTGTAAAAGTCTATCGTGAGTGTACTTAGGAGAAGTCCACACGCCGTGTGCGATTTCGGAGCTAGAAAGGCTGTGACGAACAGGATGCCTGATCGGGGCC # Right flank : GCGCCGGTAGAGCAGGTCCGACAGCCCTTGCTCAATTGGTTTAGGAGTTACGCAGTTGCAGTTGACTGGACATTCTTCTGTGTGCTAGGAGGAGAGTGCTTAGCCAAGCTTCTCCAAAGGGGGTGATGCCCATGAACCCACCGAAGTGCGATGACCTGGACTACATCCACTTTCTCATCGCCGCTCAGCGGGTCTTCACCTGCACCGAGGCCGCCCGCTGCAGTCCAGAGGAGAACAACCCTCCCGCCCATGATGCCTTTACCCGCCTGCTGCAAAGACAGCCACCCGACACGGCGGCGCTGTGGCAGGAGGCGAAGGCCTTCGTGAAGCTCAGGAAGGGGCTTCTGATCCTGGACGACACCACCCTGGATAAGCCCTACGCTCGGGACATGGATCTGGTGAGTTACCACTGGAGCGGCAAACACCAAAGGGTGGTTAGGGGCATCGCCCTCATGACCCTGCTGTGGACGGAGGGGCAGGCCCTGATCCCCTGCGACTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAAGGCGCTTAACCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //