Array 1 93678-95538 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKY01000025.1 Actinomyces naeslundii strain W8-2-3 W8-2-3_contig025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 93678 29 100.0 33 ............................. CGACGCATCCGCGCCTGGATGACGCTCCTGGAC 93740 29 96.6 32 ............................C GTTGGCGAAACGGGCTCGGTCGGCGAGGCAGT 93801 29 96.6 32 ............................C GTGCGCAAGCGTTATTCAGCAGCTGTCTGCGT 93862 29 100.0 32 ............................. TCGGCACAAGGACCTGGCGCAGGCCATCGGGG 93923 29 96.6 33 ............................C ACCCATGTGATCCACACCATCGAACACACGTAC 93985 29 100.0 32 ............................. CGAGCCGCCGAGCCTAGCCTGAGCGAGCAGGC 94046 29 100.0 32 ............................. CACGGCGTCACCCCCATCCTCGCGCTCGAGTT 94107 29 100.0 32 ............................. TCGTGGCGTCGCTGTTCCATGGTGAGGGTGGT 94168 29 100.0 32 ............................. GATGACGTAGCGGCTGCCGGCGAGTCGGGCGG 94229 29 100.0 32 ............................. ACGTCGTCGACCCGGGTATCCCCCTCGTCGAC 94290 29 100.0 32 ............................. GCCGCGCTGGGGGCGAAGATGGAAACGGTCTC 94351 29 96.6 32 ............................C CACCGTGACGACCCACACGCCGCCGGGCACGA 94412 29 100.0 32 ............................. ACATGGCCGAATACCCTGTCTACGGCTACGCG 94473 29 100.0 32 ............................. GGGAGGCCACTTCCTCCGACCCGATGGCCCGC 94534 29 96.6 32 ............................T GCGCGCCCTGCGCCGCCGCCGCACCCCATCTT 94595 29 100.0 32 ............................. CTGATTCCGGTTCTCCGACACCAGGCGCACCC 94656 29 96.6 32 ............................T CTGGGAGGCCATGGCCCACGCCATCGAGGAGA 94717 29 100.0 32 ............................. CCGAGTGCACACTCCCCCTAGAACGAGAACCA 94778 29 96.6 32 ............................T TCCTTTCAGTGGGGCGGGCGGCTGATTCGCCC 94839 29 96.6 32 ............................T AAACCCAACCCACCACACACACGAAAGGAAGG 94900 29 96.6 32 ............................C ATGGGGTGGGCCGAGCCGCCCTCCTCCCCCGC 94961 29 96.6 32 ............................C GGATACCCGTGGCTCTGTGACGAGGGCGGCTG 95022 29 96.6 32 ............................C GTCATCATAATCTCCAAACCTTTCGCAGTACT 95083 29 96.6 32 ............................C GCGTTCACGATGACGTCGTCCGAGGCGATGTA 95144 29 100.0 32 ............................. GGTCCCGAGCCCGTCGACAAGGTCCTGCTGAC 95205 29 100.0 32 ............................. TCGGCCACCGTAGCCCTGAAGTTCACCGTGTT 95266 29 96.6 32 ............................C CCGGCGACGTGACCGCGAGACCCATCGTCGGG 95327 29 100.0 32 ............................. CGGCAGGATGGCGAGACCGAGGCGGCCTATGC 95388 29 96.6 32 ............................C AAGCCCGCCGCGGATACGTTACTCATGCAGAT 95449 29 96.6 32 ....................A........ ACGTACCGCGTCACGGACGAAGTGCGCGCCCT 95510 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.2 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : GCAGCGTGCTGTGGCCGGTGGAGCGAATTACGCCGGAGAGGACGCAGGAGGGTGGTAGTCCTGATTCTTTCTGCTGCCCCTGCCTCGTTGCGGGGCTCCATGACTCGCTGGTTGTTGGAGGTCTCTCCCGGGGTCTTCGTTGGGCATGTTTCAGCTCGAGTACGAGAGCAGCTGTGGGAGCTAGTGCGCGCATACATCGGGGAAGGTCGTGCGCTACTGATCTGGTCGGTGCGATCTGAGCAGCGGTTCGAGATCGCCTCTCTGGGGCACGAGCGTGAACCTGTCGATATCGAAGGGTGCCTCGTCATGCGCACCCCGTACCGACAGATCGAGGGATCGCAGGCGATTCCCGGCGCCGTCAAGCCTCCGAAGGAGTCCTGGTCGATCGCTGCGAGACGACGGCGCTATCGGAGCTCTGCGGAGCGAGCACTAGGTCGGCAGTGAAGGCAAACGCGGTCTGGTAGTGTGGCTCGTCGTTGGGATTCCAGGGATCCGCAAGT # Right flank : GAACAGCTGCACGAACGAGGGGTGCCAGGCGGGTAAACCCCGCGCGAGCG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //