Array 1 11445-11799 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQT010000011.1 Listeria seeligeri strain FSL L7-1596 NODE_11_length_102893_cov_111.342077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 11445 29 100.0 35 ............................. AAAAGGGTGGCGGTCGAGCTGGTGGGTGGTCGTTT 11509 29 100.0 38 ............................. CCTTCTAGTTGATAGCATTTTGTGACAAAATCGACAAC 11576 29 100.0 36 ............................. TTGTCCATCTCGAACAATTTATCAAGATATTCTTTC 11641 29 100.0 36 ............................. AGCGGAAATGACAGCTATCTGTTTGGCAGTATTATC 11706 29 100.0 36 ............................. AACGATGTTAAAGCTGGAACTGCTATCCCGACTTCC 11771 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 99.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTCGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCTGGAAATGCTACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGAATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAATAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTACTTCAAGAGACCAGAAGTGTTTTAACTACTTTTAATCATCCCAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 42617-35519 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQT010000011.1 Listeria seeligeri strain FSL L7-1596 NODE_11_length_102893_cov_111.342077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 42616 36 97.2 30 ..C................................. ACCGAGCGCTGGATTTGTTGAATTCATTAG 42550 36 100.0 30 .................................... TGGTTGCGTGGTGACTACGGGGACATCAAG 42484 36 100.0 30 .................................... ACGATTGAGAGCGAAGAAGAAAAACCAGCT 42418 36 100.0 30 .................................... CGCGAGGTTATGAATGCAGCCGATAACTTT 42352 36 100.0 30 .................................... CAAGGTATAACTTTGACAATCTTATAATCT 42286 36 100.0 30 .................................... ACCGCTTCTGTTACTTCTAGTTCAAAACGA 42220 36 100.0 30 .................................... GAGCGTCAAGTCAACCCGACTACATAAAAA 42154 36 100.0 30 .................................... CCTCTGGAGATGTGTCTATGTGATTTTGAC 42088 36 100.0 30 .................................... CTATGCCTTTATACTTCGTCATATAAAGTT 42022 36 100.0 30 .................................... TTGGGCGATACCAAGGTATTTCGCGGAAGT 41956 36 100.0 30 .................................... CAACAGAAGTACGGAGTTTTTATAGCCCTT 41890 36 100.0 30 .................................... TCAGGTCAATATAAACAAGAAGGAATCATG 41824 36 100.0 30 .................................... TTGGGCGATACCAAGGTATTTCGTGGAAGT 41758 36 100.0 30 .................................... CAAAATGATTCCATATTTGTTCCATAACAT 41692 36 100.0 30 .................................... ATCCCGCTGCTTAACTCTAGTCGTTCAGAA 41626 36 100.0 30 .................................... CGATTTTTAACAGATCGTCGCCTTTGTAAA 41560 36 100.0 30 .................................... TACCTTCTGGGCCGATGTTACAGCATCAGC 41494 36 100.0 30 .................................... TTATCGTCGCCTGACTGTCCGTTATTCCTG 41428 36 100.0 29 .................................... AGCCTTGATAAAATAGTTTTTTGTAGTCC 41363 36 100.0 30 .................................... TTCTGCATAGCAACGACATAACCCTTTGCC 41297 36 100.0 30 .................................... TCCCAGACAGGGATACGCAAGTCCTTCGCT 41231 36 100.0 30 .................................... AACCAAAAATGATGGATAATTGCTGGGTCT 41165 36 100.0 30 .................................... ACAATCGGGGTAACGGTTGGTTCTAAATCG 41099 36 100.0 30 .................................... AACCGTCATCTGACATCAGTCGATACCACC 41033 36 100.0 30 .................................... TGTGAATAGTAAAGAGGAATCTGGTTTTTT 40967 36 100.0 30 .................................... GCGCAACTTCTTTATTTGCTCGTCTAATAG 40901 36 100.0 30 .................................... ACTCTGCTCCTGCTAAGGCTTTGTTCGTTT 40835 36 100.0 30 .................................... CTTTTTTTCATTTTTTCACCTCCTTAATAA 40769 36 100.0 30 .................................... TATATGGAACCGCGTGTGATGACCTCGCCA 40703 36 100.0 29 .................................... CGCGCTGTTTTACTACTCGACTCATGAAG 40638 36 100.0 30 .................................... TGAATCAGACGCTTGTATCAAGTCCTTTTT 40572 36 100.0 30 .................................... GCTGTCACGAAGCACGTAAGGAATAGCGAT 40506 36 100.0 30 .................................... GAAGTTGAAAGTATTGTACCCATCCCATAT 40440 36 100.0 30 .................................... TGGTCGGTAAATACGGTAAATTAGCCTTGA 40374 36 100.0 30 .................................... TGTGCAGGACTGTTGATATTGTCCGATTGT 40308 36 100.0 30 .................................... ATTTCGTTTGCAATGTTCACAAATGATTGT 40242 36 100.0 30 .................................... AGAAGCATGGAAGTTGCAAGAAATACAGAT 40176 36 100.0 30 .................................... AGAGCCTGACCTCGTTATAAGCGAACATCC 40110 36 100.0 30 .................................... ACGATTTCGTCTGCCACTTTCTCGCGAAAA 40044 36 100.0 30 .................................... TGAATAGAATAGAATCCGGCGAAAGAGATA 39978 36 100.0 29 .................................... TTCTCGCCACTCGTCGTCTGTAACTTTTG 39913 36 100.0 30 .................................... TAAGAAGCGTATTCAAATATGCAACTTTGT 39847 36 100.0 30 .................................... TCACTTCGCCAGCAATTCCGTCATTAACTC 39781 36 100.0 30 .................................... GTGGTAATAGACGAAGCGACTGGTTACGTA 39715 36 100.0 30 .................................... CGCCGATGACCTTGAGGTTGCACTGCTAAT 39649 36 100.0 30 .................................... AGGTGATGAAACTTGAAGCAATTGCGACAG 39583 36 100.0 30 .................................... TCTCCAACTACAGTAAACATAGTCTCTTCT 39517 36 100.0 29 .................................... TTAGGATTGAACTCATATTCTTTATTCTT 39452 36 100.0 30 .................................... CGTTTTGCGATGATGTAAGGAATAGCTTTA 39386 36 100.0 30 .................................... TGTGGTTGTTAGGGTTGACTTAACTCAGAT 39320 36 100.0 30 .................................... ATCGGCGCTATAGCAGCCGATTACGTGACC 39254 36 100.0 30 .................................... TCTACTCCGTTATTCATTCCACCACCTCTT 39188 36 100.0 30 .................................... CCTGCCGTACTACTAATATATCACTTGTTC 39122 36 100.0 30 .................................... TGGTTAATTAAAGCTCTGACATCGTTTTCC 39056 36 100.0 31 .................................... ATTATTGCATAAACTATTTCTTACTTCAAGA 38989 36 100.0 30 .................................... ATAATCCGTGTACTACTTTAAGATGGAGTT 38923 36 100.0 30 .................................... TTCATAGCATTAAACGTGTTAACTGTTCCG 38857 36 100.0 30 .................................... GGCATGATTGCGTTTACCATGTCCAAAGTA 38791 36 100.0 31 .................................... ACTTATAGAATTCGCGGTTTCAAGTATAACA 38724 36 100.0 30 .................................... AGCCTTTATCGGCGTATTGTTGACGTAAGA 38658 36 100.0 30 .................................... AAAGTAATCCGTTATATACTCGATTACTTT 38592 36 100.0 30 .................................... CCACTCTGATGCGAGTACACCGTCAATGTA 38526 36 100.0 30 .................................... CAGTTATAGAGAATAATAGTTTAGTTCTAG 38460 36 100.0 30 .................................... TTGCCTGCTGGGACTAAGTTGAAAGTTGTG 38394 36 100.0 30 .................................... ACTGAAAGAACTATATAATTTTTAACCCAC 38328 36 100.0 30 .................................... AAGTCAACAACAGCCGCAGACGGACTAGCG 38262 36 100.0 30 .................................... ACGAACCTATAATTTCAGAAGAACAATTTT 38196 36 100.0 30 .................................... GGCGACGACATGATGATGCGTTGGTACACA 38130 36 100.0 30 .................................... AAGGAAAAGCTGTTGGTAAGGCTTTTGTGA 38064 36 100.0 30 .................................... ACTAATTTTACTGAACCGATAGTTGCTACC 37998 36 100.0 30 .................................... GAGCAAAATAATAATTTGCAGCAGCAACTG 37932 36 100.0 30 .................................... CTAGACAATGTTTGAATAAATTCACCAGCA 37866 36 100.0 30 .................................... ATGATATCGTTTTTACTTAATGTTGTATAT 37800 36 100.0 30 .................................... ACTCGGAACATATAACGAACTTCATTTTTT 37734 36 100.0 30 .................................... TCTCCGCTTTGAAGTGCGGTTACAAACTCT 37668 36 100.0 30 .................................... ATGAAGCGGAACGCATTCAAACAAGTAAAC 37602 36 100.0 30 .................................... GTGAATAATAAGCAGGTTCTTCACCATCTT 37536 36 100.0 30 .................................... CATTGACATTCCCATGTGTTCTTGCACCTG 37470 36 100.0 29 .................................... AAGGGGTGTGATTCAAAAATTGAATTAAT 37405 36 100.0 30 .................................... CCGAGTTGACATTTTTTACAACCTCCTCAT 37339 36 100.0 30 .................................... TTTCTTGTATCATTGATTACATTGACTTCA 37273 36 100.0 30 .................................... CACGTAAAACATCGGTATATATGTTCTTGT 37207 36 100.0 30 .................................... ATTCATACTTAACGGGATTTTATATGTTAT 37141 36 100.0 29 .................................... GCCAGCATATAGGCATATTTCTTTTTTTG 37076 36 100.0 31 .................................... GCTTTGTTATATGAAGAGATTGTAGAACATA 37009 36 100.0 30 .................................... AGAGGAATCCGATAAAAAATTGACACACCA 36943 36 100.0 30 .................................... TGTATTAAATAATCATCGTCACTATGTTTA 36877 36 100.0 30 .................................... ACTGTCAGCACCTGCCTTCTTATCAAGGTA 36811 36 100.0 30 .................................... GCCTAATCCCACCGCTTCCCCTAGATATAA 36745 36 100.0 30 .................................... CTACTCAAGAACAAATAGAGAATTACTCTA 36679 36 100.0 30 .................................... TTAGTGTGTCCAATGCGTTAGCATAAACAG 36613 36 100.0 30 .................................... TCTTCTGTCACCGTGTTTTCTTCGTCTGTT 36547 36 100.0 30 .................................... CAAGTCGCTTTTTCTTGTCCCACTCTAATT 36481 36 100.0 30 .................................... TGGTTTGCAAAGATTGTGGAGAATTAGTAT 36415 36 100.0 31 .................................... GAGGGGACTTTGACAATCGCAAGTATTCCTG 36348 36 100.0 30 .................................... CCTGCTAGATAGCAGAGCACTGCAAAGGCT 36282 36 100.0 30 .................................... GCGTTCATCTGCTTCATGGCGGCATTATAC 36216 36 100.0 31 .................................... ACATGTTAGATAATTGCTTTCCATCAGTGCT 36149 36 100.0 30 .................................... CGTATCCTTTCACACGTACTAGATCACCAG 36083 36 100.0 30 .................................... ACGAGAGTCAGACGCAATGCTTCGTTTAGC 36017 36 100.0 30 .................................... ACCCGTGCCGCTAGCGTATTTTGCCACGAC 35951 36 100.0 30 .................................... GCCCAAAGGTATTTATAGTCCCCCTCCACC 35885 36 100.0 30 .................................... TTTCAAGTAAATCACTTTTCGTCGTCACAA 35819 36 100.0 31 .................................... CCTGCACCTGTTTGGATATCTTGTCAAAGCC 35752 36 100.0 30 .................................... CCACCATTGTATTGAACGTTGTTAGGGTTA 35686 36 100.0 30 .................................... CGTTTCGCAATGATGTAAGGAATAGCTTTA 35620 36 100.0 30 .................................... TCTGCTCACCATAGTATTTCTTTTACAAAA 35554 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 108 36 100.0 30 ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Left flank : ATTCCCATTTTTCCGTTTTCTATTTCTTCAGTTAGCTAATTTTGAAAAAATATTATATCTGACTCAATTACTACGTTCATTATAGTTATAGAGCTTCATCCTTGCAAGCGGTTACAAGTATTTCGAAAACGGTTTTCGCTGGACGAAAAAAATGGATATGAGATGAAATTAATGAAAAGATGCAGTTCTTTAGATGGAAATACCCCTAGAGATGGTTGTTGACTCTAGGGGTATCTCTTTATTAATTCGTTTTCGGAGCAGCTATTTTTTTATTGTTCAACTACTTTTTAATTTATATTCTAATTTTTCATCAGATAGATTTGTGTAGATAATTAGATTTTGACTGCGTTTTTCCAGAAAATATTGCAGGTCTTCATCACACTCCTACTTGCCAACTTTTTTAAATAGAGACCCGGTAATGGTTTCAACTCGTCATCGAAATAAAAATACATTTACATATTTTCTTCAGTCACCTAACATCATTTTTATTAACTGTTGAA # Right flank : GTCTTTTCCATTATACCTCAACCTAAATCAACCTATCAAGGTAAACAATAATATTTGCGGGAATTCCTTTGTAGTCAACGATAATTCGCCATTCATTATAAATGAAAATAAAATAAACTAATACAAATACAACTAAGTTATCCACAGCTTCCAACTTTAATTCGACCGTTTTCCCACCATAGTTATCCACAGCTAACATAGACCAATTTATTGCTTTTATCCAATCCGATTCTTCTACGATTAAAGGTATCTTTGCAATAATTTGTTCTTTTTTAACCATAATTTGTAATTCATTAACAATATCACTAAAATAAAAATGGTTAATTGCACCATCCATCCAAATATGCTCAGAAATGATAAATACATTGATTCCTCTTGTTAACATTTTTTCAACATGTAATTGAAATTTCTTTATTCCCGCTTCTGAAATTATAGTTTTTTCTGGCATTTCTATAAAAAATAAAACTTGCTTATTAAATAATTCTTTTGCATACAGATTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //