Array 1 858268-858430 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016766.1 Ligilactobacillus agilis strain La3 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 858268 31 100.0 34 ............................... GGCACGACCATGTAGCACTTCGGGCAGTTTTTAA 858333 31 100.0 36 ............................... CCGTTCGCTGGTTTGGCTGTTGATTCCCTTCATAAT 858400 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 3 31 100.0 36 TATTTACATTCCTCTTAAGTTAAATAGAATC # Left flank : TAAGGGTGAAAACATTCTCTCACCTTCCTTTGCCCTTTACTCATTTAACTACTAAGGTTATTATAACAAATTTCTCGTAAAAATTTTCTTATGCTTTTTTAGGACAAATGTGTTAAACTACTTATATATTGTGAGGTGCTCATGATGGGAAAACAATTAACAATTTTATTTTGGGGATTCATCTACGGTGAAGTCTTAGGCTACATCGTTTCCGCTTTAAGTGGCTACACCTTTGATGCTAAGCTTTCCGGCTTAATTCCAATGATTGGCGGTTTTATCGTTATTAACTGCTTATCTTACTTCGTCAAAGATTCCCAAGAAAAATAGAACTTATTTAAGGTGCTAACTTCTGAAATCTAAGTTGGCGCCTTTTTTAGTTAAATTTAAAAAACAACAGATAGGCTTCTGAATTAAAGCTTGAAAAAAGGGGGTTCTAAGAAAATCAGTTGTTTTCTTAGAATCCATTGAAAATAATACACCCAGCGTTTTGAATAGAGCCC # Right flank : CTCAAAAAGGTAGGTAATTTAAAATGAACCAGTAGTATTTTATCATCCTTAAAGATGGCTGCCCGGGTGTCTAACTTGGGTGTTTGGTAGCCACTATCGTTGCAAAATAAGCCTGTCACTTGTTCCAAAGAAAGACCACTTTTTGGGCCATCATCTCCGCCGGGCGCTGGTAACGTTCGCGGTCATAAATATCTTTACCATAAGTTAGACCTGCTTGGGCAATACTTTGTAATTCGATAATCCAGTCTAATAATTGGTCTGCAGCCATTCCTCCCTTCTTACTAATCTTTAACATACTTCACTTTTAAATCGGGTTTAAAATAAGCACGGTACTGGGCTGATAAAGGCTCATCCGTGATTAAAACGTCGATATCCTTAAGGTCAGCAGATTTATACGGAGAAGAATTCTGGGCCTCAAATTTATATTTTTGGACGACAAGGACCACTTTCTTAGAGCGCGCGATGACCTTTTTTATAATAGTTGCATCGTAAGCATCGAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTTACATTCCTCTTAAGTTAAATAGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 957574-957937 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016766.1 Ligilactobacillus agilis strain La3 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 957574 30 100.0 38 .............................. CGTTTAGAACGTCCCAAAACATTATAAAACCCTATCTA 957642 30 100.0 37 .............................. AGGCAAGCAAGCATTAACCGGGCGCAAGGTTATCTAA 957709 30 100.0 36 .............................. AGCACGGCATTATTAAACGCTCTTGTGATTTTCTTT 957775 30 100.0 37 .............................. TTGGTTTTGACCTCAACAGATACGCAGCACTGGTAAG 957842 30 100.0 36 .............................. GTTTTAGGTGATGATAGACAGAAATGGGCTAAATTC 957908 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 100.0 37 ATTTACATTCCTCTTAAGTTAAATAGAATC # Left flank : AAAATTATCATCACGATTATAAATTTTTGGTGAAGTAGAAAAATATCCTAAGTCCTCTAATATCCCTGTTCTTATCACTTAGGCAGTGAATCTCCTAACATCAAATCCCCAATCATTGCTGTAAGAACTATAAAGAGGAGTTTTATTAGAATACTTGGGTAATTTATCAGTCGCATTATCTAAGTTCATAACTAAATCTCTTTGCTCTTCACTAAGTATTTCTTTATTTCGTAAAGAGTAGTTAATTTTATAGGACTCCGAACTTTTTATAATTTACTATTGCTCCTATTTCATTAGGCAAAGGATTATTCTTTTAATCCACCCAGTAAGCACCCACCGCACATCTACAATTAGGATGAACAGAAATTATAGGAACATCTTTAACAACTTGAGTTTTCAAGTGTCTATCCATTTCATCATAACTTTGACCTGTTGTGATTCCCGCCATGATAGTCTGACTAAGTTTAGTTTGCAGCACATCCATGTTAGCCCATATCCTT # Right flank : CACTACCCTTTAAAAGCTTTGTACTATCAACTAGTTTCCACGCGCATTCTGTCTATCACTACTTTTATCCCCATATCTACATGATACTTTTTTCTGTAAACTCTTTCAAGCTCAGTAATTTCAACTTTTTCACTATCTGTCGATGTCCCCTTAATTTTGCTCTATCTACAGTCGACAGATGTAATACTTGAAGCTTAGTTAGCATTCCGAATTAAAACCATCATTATAGACTCTCCACTGCAGGCCTTCAACGCATACTTCAGCATATTTTTTAGACTAACGAAAAACAAAAAGAGAGTATAAAAAATACCATATCTAAAACATACAGTACTCACCAGGGAAAGTTATTATAATTGTTAGACATGCCCGGCATACTTTTTCCTAAAAAAGCATTATTATCAAATGTTTATAAAATATAAAGCTTGATGTATCAACGGTTATAAGGTCCTAAGATATCATAAAGACTTATCTAAGGAGACCTTTATATTATCTCCAAATGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCTTAAGTTAAATAGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 975295-974798 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016766.1 Ligilactobacillus agilis strain La3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 975294 30 100.0 38 .............................. ACGTCAAAGCTAGGCACTGCGAAACTGTCAGCTAGCGA 975226 30 100.0 37 .............................. AAATTAGACAGTGGGGGACTACGGTCAACCAAACTGC 975159 30 100.0 36 .............................. AGGACCACATGGCAAAGGTTAAACAATCAGTTAAAG 975093 30 96.7 37 ....................A......... TAGGCTATCTAGCGCATCGTGAAAATCCTTTAGGTTC 975026 30 100.0 39 .............................. TAATATGGACGTGGTTGGTCGAGTTGGCATAGTATCAGC 974957 30 100.0 34 .............................. GCACCAGGTCAATCGTGCATGGAGCAAGATATAG 974893 30 93.3 36 .G..C......................... AAAACTTCATCAAACATCTTTTTCTTACTAAATCCT 974827 30 93.3 0 G...C......................... | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 97.9 37 AAATTTATTTAACTTAAGAGGAATGTAAAT # Left flank : TCATGTTGGTGAAATTGGGCATGCCAAAACTAAGGCGTCTAAGTAACTTGATTTTACTGTTGATTCCTTCAATAGGGCCATTTGAGTATTTAGCAAATTTAGGATTAGCGGCATTCAAAACATGGGCTAGTTTTTTATCCGTTGTTAAAGTAGGGTATTTAAGGTTTGAATTAAGTGATTATTATCGATGTTTTTAACGTTTTTAGGGTAAGCCTCATCACGTTTCTTGGTTCACTGGACTTTTTCTCATAAGAAAATTTAGCTGCAAAATTGTTGTGGTGAAGTGCATTTTTACTAGTGATATTTTGTTATAGAGCGCTAGTATCTGTCGACCTAAGATAAGGTGAAACAGTACTAGTATCGACAGATAACAAAAAGGTTGATATTAAGGGACTTGAAAGAATTTATGGAAAAAAGTAATATGTAATTAAGAGTGAAATTTAGTGATAGACAGAATGTATGTGAAAACTAGTTGGTAGTACGGGGGTTGGGAGTGCAGT # Right flank : TGTTTAAAATATCAGCAGTGACATTTAAGCCTTGTTCTTTTAGAACTTCGCTTGCCTCACTTAAAGCTTTAGTTCTAACTAATTCAGCATGTAAACTTGCAAGTTCTTTATCCTTAGTATCTTGCGCTTGCTTAGTTTTATCTTCTTCAGATAACTTTTTCACGGTCTTTTTACCCTACTTATATGCTTCAAGCACGACTTGGTATTTACTAACTCTTCTTCCAAGTCGTGCTTATCACCAGTCAATTTTTCTAAACGTTTTTGAAGTTTTTCGACTGTTTTAGCAGCTTTATCTTCCTCGATCTTGCCGGCATTGTCTTGTTCGTTTTCCACTTCTTCATTAATCTTTTCAACTTCTACATCTTGATTTTTGTTATCCATTACGAAAACACCTTTCTTCTCGCAGTTAAAGCCTTGAGAGGCTACTCAGTTGTTCCTTAACGCTTGCAAGCAGGAAAAAGGCATAAAAAAGACGGTTATTGCTACTCGTCTATAATTCT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATTTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 977812-978836 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016766.1 Ligilactobacillus agilis strain La3 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 977812 30 100.0 36 .............................. GAAAGTTGCTAAGTTCGGTGTTTCCGACTTTGAATA 977878 30 100.0 37 .............................. AAGGCTTTACAACCGGGGACGGTGCAAGCCAAAATCC 977945 30 100.0 36 .............................. AACGCAACTAGAGTATAGCCGACTTAATGCTAATGA 978011 30 100.0 35 .............................. GATTCTGCTTGTGATTCTGATTCTGCTTGTTCTTT 978076 30 100.0 35 .............................. CCTATCAGCTACGACCGTAAGCTTTTGATTCCTGC 978141 30 100.0 35 .............................. TAGTAGATAGGATAAAAAACGAAGTAATTAGTTGT 978206 30 100.0 34 .............................. TTGTGGTGAAGTGGGATTCCCATACCCGAATACT 978270 30 100.0 35 .............................. GAATATGAAGCTTGACCTAAATTATCGGCATTCCA 978335 30 100.0 35 .............................. AGTCCATAGACTACTATTTTTACTAAGCTCTATTT 978400 30 100.0 37 .............................. GCCACCTGGTTGGCCAGATCTGACCGGATTCAGACAT 978467 30 100.0 38 .............................. GAAGGCTAAGAACGTAGTTAACGAGCTTGTAAACCTGA 978535 30 100.0 37 .............................. TGCTCAAGCATAAGCTTAAAGTCCGCCCATTGAACCA 978602 30 100.0 40 .............................. CTTCAACTCCGGCCGTTTCCAAATGGCCTTTATCATCAAC 978672 30 100.0 38 .............................. CGAAGAGCCGGCAAGTCCGGTTGTTAAACATGAAATTG 978740 30 100.0 37 .............................. AAAGCCCCCTAGGTCAAAGGGCTTTATCACTGTTTAA 978807 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 16 30 100.0 36 ATTTACATTCCTCTTAAGTTAAATAGAATC # Left flank : CAGTAGACATTAAAAAAGAGCTTTTGCAGACTCACTCTCGTTCTTACAATCTAAATATCCATTTAAAGATACCGCCAATAAAGGTAATAAAGCCAACAATAAAGAAAACCGGAATGATTATATCATCAATTGAAGTAACACCTAAAATCAAGAGTGGCAATGCAATAATGCCACCAACTAAAACAGCTACTAAACACCCTAATAGTTGTTTTCCATCGCCTTTTTTCCATTTATACAATTTCATCTTTCCCACCTCCATTGGCGATATGCGTTTATATCTAACATTATTAGATTATTTTCAAGTCATTCTTCTTTCGTGAAAATTTCAGCATAAACCAATGCTTTTAAGCTACTCTTTCTATAAGTCTTGACTCGGAATCAATCCACTATAACGGTTTAGCCAACAAAATGCTTATTCAAAGTGGTTACCCGCTAGGTGACCTAGTTTTACCCCGACGTCATCTGCTTCTAAATCTACATGACTGTTTGACCTTGACGGA # Right flank : CACTACGCCCTCAAAACCTCATACTACCAACTATATTTCACATACAGTCTGTCTATCACCCATTCTCACCTTCAATTATATACTACTTTTTTCTCTAAATTCTTTCAAGTCCCTTAATATCAACCTTTTTGTCATCTGTCGATACCCGTACTATTTTACCTTATCTTTGGTCGACAGATGTATGCATCTTATAGCTAATAAAACCTTAAACACCCCATAACAGAACGCTACCTCTCCACTAGGTCAGTAGCCATGTTAATCGTCCATTATCAAACCGCTTGTAAAGTAGTATGAACTCTTCACCGTCCCAGTAAAGAGCCTTAAACCTATCATTTCTCCGCCCACAAAATAAAAATAAGGAGTCATCGTAAAGATCTAAGCCGAAGTTATCGGCAATTAAGATTGCCAGCGTATCAATTCCTTTACGTAAATCAGTGTTACCACAAACAATGTACACATGCTTAGGGACATGATAATTAACCAGCATACTTCTTCACCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCTTAAGTTAAATAGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //