Array 1 130-890 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOWD010000014.1 Escherichia coli strain JS100 NODE_14_length_90042_cov_57.915498, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 130 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 191 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 252 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 313 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 374 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 435 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 496 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 557 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 618 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 679 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 740 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 801 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 862 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGGGG # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1269-202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIOWD010000017.1 Escherichia coli strain JS100 NODE_17_length_84402_cov_56.998291, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1268 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 1207 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 1146 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 1085 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 1024 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 963 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 902 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 841 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 780 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 719 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 658 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 597 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 536 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 475 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 413 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 352 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 291 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 230 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //