Array 1 583056-583686 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHFC010000001.1 Enterococcus faecalis strain 4928STDY7387782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 583056 37 97.3 29 ....................................G GGATTTACAATAACTTCGCTACCATCTTC 583122 37 100.0 29 ..................................... TATGTGATTGAGGGAATTTTGATTGATGC 583188 37 97.3 29 ....................................A TAAGGCTAAAGAATCTATCAAGAAAGTAA 583254 37 97.3 29 ....................................C TTAAAGCGTTCCGAATAGCGTTCTAAGAA 583320 37 100.0 29 ..................................... AAGCATTTTTTTGATGTGTAATACTTATC 583386 37 100.0 29 ..................................... TCCAAAATTTAGAACAAGAAAAAAAGACC 583452 37 97.3 29 ....................................G CATTTTTGTAGTTCTTACTATTCTTGCTT 583518 37 100.0 29 ..................................... CGACCGTCCCATGTTGGAGCTCCAATCAA 583584 37 97.3 29 ....................................C TTATTTAAAAGACGGCAATATTAAAAACA 583650 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 10 37 98.4 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : TGTATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTTGCAAGAAAATATCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTACAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AAACTTTTTTGATTTGGCTTTTTCTCCCCTGTTTTATAGCCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGTTTCAATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAA # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 155409-156191 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHFC010000002.1 Enterococcus faecalis strain 4928STDY7387782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 155409 37 97.3 31 ....................................A CTGCTCATTCGTTTTCTCCTCCTAACACGCT 155477 37 97.3 29 ....................................C AGCGCCGGAAAAGTAGCAAGCCCCACAGT 155543 37 97.3 29 ....................................A CGTGCCTTCAAATCCAAAAAAGGTTTGTT 155609 37 100.0 29 ..................................... GTTTTAAATTCATACATAACGAAACATGT 155675 37 100.0 29 ..................................... TAGAAAAGACGTGACAGAGCAAACAGCGC 155741 37 97.3 29 ....................................A GGTACAATTTATGGATTGTCACATGTCAT 155807 37 100.0 29 ..................................... GATGAAAACCGATGGTATTTACTTTCACA 155873 37 97.3 29 ....................................C TCGTTAGAATGCCCTTCACAGCTGTTAAA 155939 37 97.3 29 ..................................T.. CTAATGAGCATTCATTACATATGTAGAAC 156005 35 81.1 114 ......................--.TT.CG......G ATATGATTGATGTAAAAATATCATTGATATGTATAAATATGGTTATTATATAAAAAATATAAGTAACGAATTAAAGCTTTGCTAGAGCAAGTGATGCGATTACGAAATTATTTA T [156039] 156155 37 67.6 0 A...........C...A....TT.CTT...G..T.GA | ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 11 37 93.9 38 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTATTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAGAAAAAATAATTCTCCGAG # Right flank : AGAGTACGATTAGTTAAATATTTAGTTTTACAGCTATGTTGTTATTATATGTGTTGAACGAAGTTATTGATTTTAAAAGTAGTTGTTCCTCCTTTTTTTATATGCTACAATTTTTCTATATTAATCATTAGTTAAATATTTAAGGAGGTGATTATAATAAGAAGGAAAGGATTTAACAAAATAAAAAAAGAAATGGAATATGTTAAAGTAGTTACGAATTTACTAATGGTATCAAAATTTTTTACGCTACAGTCCGATGAAGATTTACATACATTAACTCTGTTTGGAACATTACTTATTTAATATTTATAGACGCTTTGTAATGAATGCGCTTTCTACGAAACTGGATAATAAAAATTGGCATTTTTCAAATGCTACTTTATGTAGTTTACTTTTTTATAGTGGCTATGTATGTTCGCATTTATTTCTTTTGAATAAAAATCACTTATCTATAAATCAAGAATTAATCCCCAATTTATTGAAAATGACACTCCCTGTTT # Questionable array : NO Score: 4.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.72, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //