Array 1 2060842-2061178 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906445.1 Veillonella parvula strain NCTC11810 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 2060842 35 77.1 41 AAAA...G.....AAT................... TAGAATTAGATGAAGTATCTGTAGCTGATAGCACTAGACTG 2060918 35 100.0 43 ................................... ATTGTAAAGATCAAGAAGGAACTTATTCCATATATTTCAGCAA 2060996 35 100.0 35 ................................... TAACTTATAATACTCCTAGATTGAATGCTATTAAA 2061066 35 100.0 43 ................................... AAACCAAGTATTGCAACTCTTATTAAAAAAGATGAGTAAATAA 2061144 35 97.1 0 ................A.................. | ========== ====== ====== ====== =================================== =========================================== ================== 5 35 94.8 41 GTTTCCGTCCCCATCAGGGGATTATTTAATTTAAC # Left flank : TGAAGCGGTAACTCTTTATCAAACTTCTGTGTAGAGGTATTTTCACCTTCCTCAAGATCTCGACGATTTACAGCTGCAGCAATATTATCTGCTTCGTACACAATGTATGCATAATCATCATTTTTTAGTTGAGCTGTACTAAGCTCTTTCCCGTGATGATACTTCAAACAATGAGTAATACTTTGCTTTAAGCCCATATCGGAAAAATAGGGTTCAATGAAAGCAGCGCCGCGCTTAGAATGTGCATCGGTTCCCTGATTAGCTCGATACACGACTTTGCCGATATCATGAAGCAATGCACCCTTTACCAGTGCATCCCATTTACCCATTACATCGCCTCCAAACTCTACTTAAGAAATAAAAAACCTATTGACTTCATTATATATTCATTTCTGTTTAAAACCAATAGAAAAACCATCCGATTTATACAAAAAAGCCAGTATATTCACTAAAAAGAATATACTGGCTATATTTTTATACTTATATGAGTTTTTAACATA # Right flank : CCCTGTCTCTGAAACAACAGATATTTACTGGTTCCAAAATGCAAAAAACGGCGGAGATTGCAAATTGATTTTAAAAGGCACTTTAGCAAGCTAAAATAATGTCTTTTAACCGCACCACTATCATAACGGCGCAGATTTGGTTTTCCGAGTTTTAAATCTAGCTATATTATACCATAAACAAAAGAAATAGAACCATTGGCATTAGTGAGATAACTCTATCAATATATCAAACTAAAAATAATGGTTCTATTAATATACTATAAACGTTAATTGTTGTTGCAACCTAATCACTGATACTTGTGGTATGCTTGAAGCTTACTCGTTTCAATACCGTAAACGGTAAGTGCTGTTGCAACAGGTGCAGATAGAAAATATCGTCGCCCTTGGAAGTATTATGTTTCAATACCGTAAACGGTAAGTGCTGTTGCAACTCTTCAATTTCAATACTGGAATTGATTTCTACTTCACGTTTCAATACCGTAAACGGTAAGTGCTGTTGC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCATCAGGGGATTATTTAATTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 2062054-2061425 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906445.1 Veillonella parvula strain NCTC11810 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 2062053 35 100.0 40 ................................... TAATTACTAATAGATTGTACAGAACGATTACTTTGAATAA 2061978 35 100.0 39 ................................... ATTCTTTCATAACAGATTGTACACTTTCACTGCTCTTCA 2061904 35 100.0 41 ................................... ATTCTTTTTTTGTCTGTTCATATTATTCTCCTCTCTTGACA 2061828 35 100.0 39 ................................... ATTGCATCGTTACGAACTTGATCCATTGCAATATTGTCG 2061754 35 100.0 39 ................................... TTTACCGCTGTCTTAGTGGTATCTTGTAAAGATTTTACA 2061680 35 100.0 37 ................................... GTGAAGTAGAAATCAATTCCAGTATTGAAATTGAAGA 2061608 35 100.0 40 ................................... ATAATACTTCCAAGGGCGACGATATTTTCTATCTGCACCT 2061533 35 100.0 38 ................................... GAGTAAGCTTCAAGCATACCACAAGTATCAGTGATTAG 2061460 35 77.1 0 .........A..A...A......TA.....T..TA | A [2061429] ========== ====== ====== ====== =================================== ========================================= ================== 9 35 97.5 39 GTTGCAACAGCACTTACCGTTTACGGTATTGAAAC # Left flank : GACTTATGACACCATAGAAGAATATAAAAAAGTATTAGATAAGTATCTATTTTATATGTATAAGTAGTGACTATATAGAAAAATTTATATACCTATTTTATAAAGACTTCCATACAAAATTTTATTTATAGATTGAGGTTATGAGCATAAAACATAACTATATAGTTATGATCTTTATGCCTTAAAGAATAAAAAGAACTCGCCTAATAAAACGTTAGGAGGGTTCTTTTATTTAAACTATATATTGAAAAAAATAACTATCAAAATTTTATTAATAGTATTTCCTTAGAATATATTGAAAAGAAAATGAATTAAATATTGACGCAAAATCTGAAAAATCTTATAATTACTGTAACCTTAGAAAAATCATTTACCACCAGTATTTACCTATGCTCATCGGCATTTTTAATCCCATGGGAGCTCAATCTGACCGTTTACGGTGTGAGGTTTGCCAAAACCTATTTTTAAGCCCCATGAATACTGGACTACTGAGGCCTGCT # Right flank : GAACCATTATTTTTAGTTTGATATATTGATAGAGTTATCTCACTAATGCCAATGGTTCTATTTCTTTTGTTTATGGTATAATATAGCTAGATTTAAAACTCGGAAAACCAAATCTGCGCCGTTATGATAGTGGTGCGGTTAAAAGACATTATTTTAGCTTGCTAAAGTGCCTTTTAAAATCAATTTGCAATCTCCGCCGTTTTTTGCATTTTGGAACCAGTAAATATCTGTTGTTTCAGAGACAGGGTTAAATTAAATAATCCCTTGATGGGGACGGAAACTTATTTACTCATCTTTTTTAATAAGAGTTGCAATACTTGGTTTGTTAAATTAAATAATCCCCTGATGGGGACGGAAACTTTAATAGCATTCAATCTAGGAGTATTATAAGTTAGTTAAATTAAATAATCCCCTGATGGGGACGGAAACTTGCTGAAATATATGGAATAAGTTCCTTCTTGATCTTTACAATGTTAAATTAAATAATCCCCTGATGGGGA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGCACTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 3 2079403-2078547 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906445.1 Veillonella parvula strain NCTC11810 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================================================================================================================================== ================== 2079402 35 100.0 35 ................................... CTAGTTCTGCTTTCTTATTTTCAGCATCATGTAGA 2079332 35 100.0 43 ................................... TAGAAGGGGTTGAATATTCTACTATTGCCATGTCTGCAGCTTC 2079254 35 100.0 35 ................................... ATTATTGCTGTACTTCAAAATGACAATTACTTTGG 2079184 35 100.0 36 ................................... GCTAGAAATAATTCGAATCCGATTACAAATCCTAAA 2079113 35 100.0 41 ................................... TATTGGGAGTTTTGAATTTCTTTATGCATTTGCATAAAGAG 2079037 35 80.0 87 ........A..A.................GCGC.G AAGGGTGCGAGACAGCAGAGGAGCAAAGCGACGATGAGGTCCGCACATCTCAAGTACCTGAACGAAGTGAAGGTAAAACAAGGGTGA 2078915 35 74.3 37 TAA.GG.TTCA........................ ATTTATAACTATCGGCAATTTTAATTTTAGATGATTC 2078843 35 94.3 37 ........A..A....................... CCAAAGAACTTAATGAGTTTCAAAACATTAGCTCTAC 2078771 35 82.9 155 ........A..A..........G........C.GA AGGGTGCGAGACAGCAGAGGAGCAAAGCGACGATGAGGTCCACACATCTCAAGTGCCTGAACGAAGTGAAGGTAAAACGAGGGTGATAAGGGATTCAGCTTACCGTTTACGGTATTGAAACCCGGTCCATGTTCCGTGTGTGGTGAATTTCCAAG G [2078740] 2078580 34 82.9 0 ........A..G.................-.CGT. | ========== ====== ====== ====== =================================== =========================================================================================================================================================== ================== 10 35 91.4 56 GTTGCAACCGCTCTTACCGTTTACGGTATTGAAAC # Left flank : GTTGATGAAGCAGTAGATTTTGTACTAGACGAATTATTTGATTGAGTATAGGAGAGGTGTACATGTCAACTCTAATAGGATTATTATTGTTGTATATATTCGCTTGGTATCTTGAGGATTAATAGTAGAAATAATGATGGAATATAATTGTATATAGGCCTATTCATATGATGATGTATGGATAGGTCTTTTTATATGTAGTAGATAGACTAAATCCTTTTTTAGGTATTCAAATTAAGTTAAAAATTGTTAAACTTAGATACTATCTACATTTAATTAAAAATAAGCCATAAGTCAGAAAGAAAACGATAAAGAATATTGACGTAAAATCGAGAAACCCTTATAATTACTGTAACCTTAGAAAAATCATTTACCACCAGTATTTACTTATGCTTATCGGTATTTTTGATCCAGTGGGAGCCCAATCTGACCGTTTACGGTGTGAGGTTTGCCAAAACTTAATTTTAAGCCCCATGAATACTGGCTTTCTGAGGTATGCT # Right flank : GAAGAATGGGAATATCTAACTTAAAAATTACATAATAATAAAGAACTGTGTTCTTGTGTATGTCACACAAAAATACAGTTCTTTTTTTGTTCCTAGTTTTTCTGATTAGTTCACTTTCAGTATGATTCGTATAATGAACTCAACAAGTTTAATTGGTCTTATATAGGAGGTAGTATATGGCAATGTTGTTTTTAACTTTATTGGTGTGGTTTGTATTACCATCACGGAATGATTATTAAGGAGGGTATTATGGAAAATTTACAGGAAGAATTAAAGTCTATGTTGTCCTTATCAGGGCGTATGAATCGTCGCTCTTATTTTATGAATTTGTTGATGATTATTGGTATTGGCTATCTTGGGGGTCTTTGTATTAGTCTTGCCCCTGTATCAAAGTTTTTCTGGGTATTGGGTTGGTCAATCATAGGGTATTCTGTTATTCGAGAGTTAGCTATTGCATCGCGTCGTATTCATGATTTAAATGGACCAACTTATTTAGCAGG # Questionable array : NO Score: 8.32 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:-0.55, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACCGCTCTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 4 2092156-2091099 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906445.1 Veillonella parvula strain NCTC11810 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 2092155 35 100.0 36 ................................... ATTATATGAATATTATTACTAAATCAGAACATCAAA 2092084 35 100.0 38 ................................... TCTATAAATTAGTCACGACTATAATTATTAAAGTCGTG 2092011 35 100.0 36 ................................... ATTATATGAATATTATTACTAAATCAGAACATCAAA 2091940 35 100.0 38 ................................... TCTATAAATTAGTCACGACTATAATTATTAAAGTCGTG 2091867 35 100.0 38 ................................... ACCCATTCGCCTAGTGCTTTATGATAGTGACTTACAGG 2091794 35 100.0 38 ................................... TTGTATTGATGGCGGTGCACAATATTATCAAATGTTAA 2091721 35 100.0 38 ................................... CAATAAGATCAATATTATTAATATTATCAAGCTGGCTA 2091648 35 100.0 40 ................................... CTCCTTTATAAACATTATAATAAATAATCGTAACATACAA 2091573 35 100.0 37 ................................... TCTTCACCTTCTTCATGGAATTCGCCTTCATCATCAA 2091501 35 97.1 41 ...........A....................... TGTAAACCAATAGCTTTATTTTTATGGCCAAATGCTGCAGA 2091425 35 100.0 36 ................................... GCTTCATAAACTGCGATAACACACATAATAATTCTC 2091354 35 94.3 40 .......T...A....................... TTATCGGAGTTGAGCCAGCTTCACGCATCAATTAGTTTTT 2091279 35 100.0 36 ................................... CCCTAAAATTGATTTCTGACCGCTCGCAGTCGGACC 2091208 35 88.6 40 .......T...A.....T......A.......... GACATTTCGTTCAAGGTAACTTCTTGCTTCATTAAGTGCG 2091133 34 74.3 0 .......T...AT...T....-...A.....T.CT | G [2091103] ========== ====== ====== ====== =================================== ========================================= ================== 15 35 97.0 38 GTTGCAACAGTGCTTACCGTTTACGGTATTGAAAC # Left flank : ACTTGGTATTAAAACGGCACTTGGTATGGGTGGTGTGAAGTGTGAAATTATAGAATAGTTTCCACTAGAAATATATGAATGTTAAAAAGTTAATATTCATATATTATTGGCTTTATCTGAATTTATAGATAGAGTTTTTTGTACAGTTTTACTTGTTTATCTGGGTATAGTAGATAGTATTTTAATTGTCTAAATATGGTATTAAATGAGAAGAATTGACATGGATATTATGGTATGGTCTTAGACTAAGGGTAATAAGGGTAGATGATTGATTATATTTTTCTTTAAACTCAAATGAAAAGAAAATGAACTTAATTGTTGACGTAAAATCTATAAACCCTTATAATAACTGTAATCTTAGAAAAATCATTTACCACTAGTATTTATCTATGCTCATCGACATTTTAGATGCAATGGGAGCACAATTTGACCGTTTACGGTGTGAGGTTTGCCAAAACCTATTTTTAAGCCACATGAATACTGGCTTTCTAAGACACGCT # Right flank : ACAGATGGTGAGGTAGAAGCGGGCACAGCGCAACGATGAAATCCTCTATATTGCAGTTATTTATACAGATTGAAGGTGTAAATAAAGGTGATAAGGGGTTGCACTATATTTTTATATCTAATAGAAAACGAGTGAATCTTTTGAATTCACTCGTTTTTTTTATGTCTTAGTTTTTTTGAATTTGGTTATATTAGCTTTCATCTTATACTAAAGACGTAGCCGATGAGCGGTGATAATCTTAATATGTTTAGGGGATCCTAGTTTTGCATCAGATTATTTGTAGCTTGTTGGGGATTGTAGAAAATATGTATAGCGTTAGGTATAGGAGGTAGTATATGAACATTAATTGGAATGGATTATTTTAATAATAGTATATTTAGTTGTAATGATAGGAGGGATGTTATGTCGCCTTTAGCAGTGGATTCTGCAGTAGCAGTGTTAGTAGCGGTGCTTGATGCACTTGAAGAGTAATTTTATTTATGTATGTTGATCGGTTAAAG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAGTGCTTACCGTTTACGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //