Array 1 67533-68700 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWMT01000021.1 Pseudomonas aeruginosa strain 9092533235 IPC1499_21.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 67533 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 67593 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 67653 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 67713 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 67773 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 67833 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 67893 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 67953 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 68013 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 68073 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 68133 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 68193 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 68253 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 68313 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 68373 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 68433 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 68493 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 68553 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 68613 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 68673 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 79173-77225 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWMT01000021.1 Pseudomonas aeruginosa strain 9092533235 IPC1499_21.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 79172 28 100.0 32 ............................ GAAATCAGGCGCTTCGCCGATGTACCTCGAAC 79112 28 100.0 32 ............................ ATTTGCGAATCACATTCGGAGGAAGTACCCGA 79052 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 78992 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 78932 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 78872 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 78812 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 78752 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 78692 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 78632 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 78572 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 78512 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 78452 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 78392 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 78332 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 78272 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 78212 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 78152 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 78092 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 78032 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 77972 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 77912 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 77852 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 77792 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 77732 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 77672 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 77612 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 77552 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 77492 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 77432 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 77372 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 77312 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 77252 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 33 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //