Array 1 91326-91690 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHMI01000016.1 Shinella sp. JR1-6 NODE_16_length_142938_cov_34.6454, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 91326 33 100.0 33 ................................. AAGCCGCATACGACGTCCAGAAGACAACGATCA 91392 33 97.0 36 T................................ GTCCTGGACGCTGCCGCGCATCGTCCAGCGCGACCA 91461 33 97.0 33 G................................ GCGACCGTGAAGGCATAGGCATGCTCTTCCGGC 91527 33 97.0 33 G................................ CGCCCTGGTCGCGCGACGGATGAGTTCGGCAAC 91593 33 100.0 34 ................................. GGGTCGGTGGTCAGGAACCCGAATAGTTCGTGCT 91660 31 87.9 0 .........................G--A.... | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 96.5 34 CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC # Left flank : CGCGCTGTCCTTCGCCGATATCCCCGACGCGGATGCCAGCAAGGCGACCTCGATGAGCGCCGTGCTTCAGCAGATCAGCCTGGCACTGGGGGTCGCCGTTGCCGGCGCGATCCTCGAAATCGAGACCGCGCTGACAGGCTCCCCGCTGGAACTGCGCGATTTCCAGATCGCCTTCATGATCATCTCCGCCCTGACCCTCGCCGCCGTCCTGCCCTTCATCACCATGGCCAAGAATGCCGGCGCCACCGTCTCGGGCCATCGTCTGCCGGGGCCGGACGAGGAAGCGGCAACGGCGAAGTAACCCGCCCCCACCCGCAAACCGGCGCGAACCTCAAGCGTGCCGCAAATCCCCGGCAGGTTCGCACCTGCCCTATCTTCTTGACGTTTTTGGTTCCGCTGCTTCAGCCGCTCTCACCCCGACGCAAAAAGGCGCGCCGCACCCGCCCATCCGCACCAGCCCCCATCTTTTGTCCGTGCGAACAATGCACTAAACCTACCCC # Right flank : CGGCGGGTTGCTGGAATATATCGAGTGGTCGGAGACTTCCGGCCCGGCGCGGGCTATTCGGCCTGCTCGCAGACGGCAGCGAGTTTGTTGCCGTCGGGGTCGCGGATGAAGGCGGCGTAGAAGGTGGCGTGGAACGGGCGCAGACCGGGAGCGCCTTCATCGCTGCCGCCGGCAGCAAGGGCCGCGGCGTGGAAGGCATCGACGGCCGCGCGGGTCGGGGCGACGAGCGCGATGGTCACGCCGTTGCCGAAGGTGGCGGGTTCGCGGTTGAACGGCTCGACCACCCAGAAGCGGCAGCGCACGTCGCCCTCCGCCGCATAGCCGATCTCACCCGGCGCCTGCTTCTGCCTGGCATAGCCGAGCAGCGGCAGGACCGAGTCATAGAAGCGGCCGGCATGGTCCAGATCGTTCGTGCCGACGGTGGTGTAGAGCAGCATCAGGCGTCCGCATCCTCTTCAGCCGCCTCATCCTTCGCCTTGCGCCCCTTGAAGCCCTTGGCG # Questionable array : NO Score: 8.77 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 423684-428053 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHMI01000002.1 Shinella sp. JR1-6 NODE_2_length_553046_cov_33.0381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 423684 31 100.0 34 ............................... TCTCTCCTCCTCTTCTCCTTTCCCTCTTCTCCCT 423749 31 100.0 35 ............................... GGTCCATTGGACCGAAGCCGGTTACGGTCCAGATC 423815 31 100.0 34 ............................... CGCCGAACTTGATAGGGCCGGGCAGGCGGCCCTC 423880 31 100.0 36 ............................... CGTGTTGGCGGCCGTGAAGCTCGCACTGTCGCTCAG 423947 31 100.0 36 ............................... CAGTCCGCCTTGCCCCAGAGCGCGCCGTCGCGGACG 424014 31 100.0 35 ............................... GCCGTGATTGGCGGCAATGACGTGGACGTTGCGCG 424080 31 100.0 35 ............................... GCCTAACCCTGCTGCACCAGCGGGGCCCTTCAACA 424146 31 100.0 35 ............................... GCGTACTTGAGCTGGTGAACGGCCTCTACGTCTCG 424212 31 100.0 35 ............................... TTGTTCAGCACATCGCTCGGCTTGTCCGGGTCCAT 424278 31 100.0 35 ............................... TTTCGGTGTCGGTCTGCAACTTCGTGACCGCCGCG 424344 31 100.0 36 ............................... CTCTGCCGGCTTGTCGTCACGCGGCCGCACGCCGAG 424411 31 100.0 34 ............................... GACCACATCGTCCTCGATGCCAACTCCAAAGATA 424476 31 100.0 33 ............................... ACCAACGAGCAGTGGGATCACTTCAAGAAGGTG 424540 31 100.0 35 ............................... AGTGAAGACGGTTGCCGAGAACACCGCAGCGAAGA 424606 31 100.0 35 ............................... GTCCTGATCGAGGAACTCTGGCTGTTCGGCAAGAG 424672 31 100.0 37 ............................... AGCCGACTGGCGCTGGCAGCTCTTCATGAGCGGGCAG 424740 31 100.0 36 ............................... TGTCGCCTCTGCTCAGGACGAGCTTGCCAAGAGCTC 424807 31 100.0 35 ............................... AGGTACTGGCGTTGAGCGAGCAATCCGCCGCCGAA 424873 31 100.0 34 ............................... ATTTTCACCTTGCGGACCGGGTGCTCAATCGTCC 424938 31 100.0 35 ............................... GATCGTCAGGAGCAAGCCGCGTGACCAGAAAGCCG 425004 31 100.0 34 ............................... ACGCCCGATGCCGAGGGGCGCCATGACAGCCCGG 425069 31 100.0 34 ............................... AACATGGAGACATGACCATGACGACCACAGGTAT 425134 31 100.0 35 ............................... CCCACGCTCCCCTGGTGCGAGGCCGATGTCGAGCG 425200 31 100.0 35 ............................... TCCCTTGATGGGCGCTTCCTCTACCTCTGCCTCTC 425266 31 100.0 36 ............................... GGGAGAACAGCGCCCAGTTTTCGGACTCGGCAGGCA 425333 31 100.0 36 ............................... GCCCGGATGGCGGATGACGCCATTCGGATGGGCCGG 425400 31 100.0 34 ............................... CCGCGCAGCCCCCACATTCCCGGCCATCGCATCG 425465 31 96.8 36 .......................G....... TATGCCAAGTTCAGCCAGTCCGCCGACAAATTCGGC 425532 31 100.0 35 ............................... GGCAAACTTGTCGAGCGCAATGATCGGATGGAGAT 425598 31 100.0 35 ............................... CTACACGAGCTTCCATGCGTCGTCACAGGCCGGTA 425664 31 100.0 33 ............................... CCCGACGTCACCGAACCGGCATCGGGGCTCACT 425728 31 100.0 34 ............................... GGGTCGCAGTATGTGCGCACCGGCCTTGCCCGGT 425793 31 100.0 34 ............................... CGAACCGCTTCACGGGCGAGGTCGAGCCGATCGC 425858 31 100.0 35 ............................... GATGTCGAGGACATCACCGCCCCGGGCGTGATGGT 425924 31 100.0 35 ............................... TCGCCCTCCTCGATCATCGACTGGAAGTCGGCAAA 425990 31 100.0 35 ............................... GCGGCTTCACGCTCGTCGTCGACGACAACCGCAAT 426056 31 100.0 33 ............................... GACATCTCGATCGCTGGGCGCAGCTACGAAGGG 426120 31 100.0 35 ............................... CGTGACGCGGTCACCTGGGCGGCGTCGGTGGTTGC 426186 31 100.0 34 ............................... TCCAGCGCATCGCGGCCGGCAAGCCACGGCCAGA 426251 31 100.0 36 ............................... CCGCAAGTCGCCGCGCGTCGATGGCCGCACCCGCAA 426318 31 100.0 35 ............................... ACGTAGCAGTCGCCCGCGAGTGCTGGCGCTGAGAC 426384 31 100.0 36 ............................... CCGGTACCCGACCCGGAAGATATCAAGCTGCTCATG 426451 31 100.0 35 ............................... ACCCGTGTGTTGTGCCGCGTGAACGACGAGTAATG 426517 31 100.0 35 ............................... TCGCCACCCTTCGCCGGCTTGGCTCTTGATGTAGG 426583 31 100.0 35 ............................... ACGCAACCAGGCGCCTTCGCGATGGACGTGGCCAT 426649 31 100.0 35 ............................... ATCGTGTCCGTGCAGGGCTTTTACCATGGCGGCAA 426715 31 100.0 33 ............................... CCGATATGGGCGAGCTGCGCCTGAAGGTGCGCG 426779 31 100.0 35 ............................... CTCCCACATGACGAGGTGGTCTTCGAGGGTGAAGT 426845 31 100.0 35 ............................... CTTTCTGAAATCGAGGTCACCGACAAGGCGGGGCA 426911 31 100.0 34 ............................... GACGACATAGGCCGAGGTCGAGAGGTCCGCGCGC 426976 31 100.0 34 ............................... CGCAACATGACGAAGACGTTGACGGCGGGCTCCA 427041 31 100.0 34 ............................... AATCTGCTCGATGACGCCGGGGCTGCGGACGTTT 427106 31 100.0 35 ............................... CTCCAGTCATGTGAGAGACGAACAGAACCGGAGAA 427172 31 100.0 34 ............................... ATTTCTGGGTTCGAGGACGACGATTTGCAGGAGG 427237 31 96.8 35 ...................A........... TCGCGATCAGCACGGGGCTGCTTTCCGGTCGCAAC 427303 31 96.8 34 ...................A........... GTTGAACGGGTTGAGCACGCCGTTGTGCGAAGAG 427368 31 100.0 34 ............................... ATCTCGGTCATATCGAGCTGGAGCCTGTGGACGG 427433 31 96.8 35 ...A........................... GGTCACCAGCTTTTCCGCGAAGGAAACGTTGGCGT 427499 31 96.8 35 ...A........................... TGAAGCCCAGTCACGGCGGGGGCCGCACCGCCGAG 427565 31 96.8 35 ...A........................... AACCAGTGGCTCCAAAGCCGGCTGACGGCGCACGG 427631 31 100.0 35 ............................... CTGCTCGGTGTGGAAAACCCGACGCCCTCTGCGCC 427697 31 100.0 34 ............................... CCCACAGCTTGAAGCCGCCGCTCTTGGCGCGCAC 427762 31 96.8 34 ................T.............. TCAGCATCCCCGCGATCGCCGCCTTGGCGATCAG 427827 31 100.0 34 ............................... TCTTCAAAACCCAAAAGACTGGCACGGACGACTA 427892 31 96.8 35 ............T.................. ACGCCCGATCAGATGATTGATCTCGTCGATAAGGG 427958 31 96.8 34 ..........................T.... ACGCCAAAGCCGTGGAGCCGAAGGTCTGGCCGCT 428023 31 93.5 0 ..........C....G............... | ========== ====== ====== ====== =============================== ===================================== ================== 67 31 99.5 35 GTCGCCTCCTTGCGGAGGCGTGGATTGAAAC # Left flank : CGATGCTGGTTCTGGTGACCTATGATGTGCGTGTGAGCGAAGGAAAGGGCGCAGCCCGGCTGCGGGCTGTGGCAAAAGCCTGCCGGGATTTCGGCCAGCGCGTGCAGTATTCCGTCTTCGAGATCGAGGTCGACCCCGCCCAATGGGCCCGTCTGAAGGCGCGGCTGGAGGGTGTCATCGATCCGGCGGTGGACAGCCTGCGCTACTATCATCTCGGCGCCAACTGGCAGCGCCGGGTAGAGCATGTTGGCGCCAAGCCCGCCACGGATCTCAACGGCCCGCTGATCATCTGACGGCCCTGGCGATCTCACCCGGCCTGCCCGTGCGAACCCCAAGCGTGCCGCGAAATCCCGCGACGTTCGCACCGCCTCCCAGACGTTGAAATTCCACGCTCTTCCTCTCCAGCCCTTGGGGAGACCCGGAGGAACCCGTCCCGGTTCCCCTCGTTCCGCACATCCAGCCCTTCCCGCCGAGCAAAATCCATGGTCTACAACCAGCCA # Right flank : CGACGCCACCGGCATGGGCTGGATGGTCGCCGTCTGGGGGGCGCCCCAGCGCCGGAGCGGGGAGTGCCCGCTCCGGCGTGCCTTCCGTCAGCCGGCCTTCAGTACGTCGGCAAGGGCGTCCACCAGCATGTCGGCGTTTTTGCGGGAGAAGACGAGAGGGGGGCGGATTTTCAGGATGTTGGCGTTGGGGCCGGAGGCGCTGATCAGGATGCGGCGGGCGCGCAGGCCGTTGACGATGCGCGCCGTCAGGGTGGCGTCGGGCTGTTTCGTCGTGGGGTCCGCGACGATCTCGACGCCGATGAAGAGGCCCGAGCCGCGGATGTCGCCGAGGGCCGGGTGGAGGCGAGAGAGCGCCTTGAGGCCGTCCATCAGGTGTTGGCCGACATCGAGGGCATTCTGCTGCAGGCCCTCCGTCCGGATGGTTTCCAGCACGGCCTTACCGGCCGCGGCGGCGATGGGGTTGCCGCCGAAGGTGTTGAAGTAGCGGGCACGGGGGCCGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTTGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //