Array 1 88026-87795 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJNU01000003.1 Streptococcus mitis strain KLC11 D8852_contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 88025 35 100.0 31 ................................... TAAGCGAGATTGTCTTGCTCGCTGATAAAGA 87959 35 100.0 30 ................................... TGTCCTAGTTTTTCGGCGCAGCTGGCGATA 87894 35 100.0 30 ................................... GAAATGATTAAGACATACCCTGACGGCTTG 87829 35 97.1 0 .....................G............. | ========== ====== ====== ====== =================================== =============================== ================== 4 35 99.3 31 GTTTTTGTAGTCTCCAAAATTATGACCGATAAAAC # Left flank : ATTCTTCAGGCACGAAATTAACGACATAAGCAGCAACTAAACTCGCCCCTACAAGTAAGCCTGTTCCTAGATATTGCCCCGCATAAATATGCCATTTCTGTTTATTCTGTGATAGCTGTGCAAATAAAATAATTAAAATAATTAAATAATCGATACTGGTGGAAATATAAACACCAATAGCAGATATGATTGTCTGTCCCATAAAAACCTCCTGTATTAGTTAGTAATAAATCATCAGATTTTAGGAGAGCACAGACACATTAATTTAGCTATCGCTAGTGGGTAATGTCGAACGTAGGAAAGCATTTTACTCCTCCTCAAAACGTAGTTACAAAGTAATTTCTAACTGGAATTCGGTGACTACTTCCATGTAAAGTATAACATACTATACTTTACTTCGTAAAGTGTAGGCTCTCCGAGGGGGCTTGCAGACAGTTACTCGGCTTGAAAAGCCGAGTAACTGCGCACCTTCATGGTGTCATTAGCTGATACCATTTGAG # Right flank : CTCAATAAAAAAGCCCTCTGAAAATCAGAGAGCTGATTTGAGCTCGGGCTAAAATCCTAGTGAAAAAGATGAAACTCCTTGTGTTCATCGAACACGGTGTCGTTTCCCTATTTTCATACGGATTTCTTACGCCCTTAGCATCATGATTAACGACGAAGTCCTAGAGAGTTGATTAACTCACGGTAACGGTTAACGTCGTTTTTACGCAAGTATGCAAGCAAGTTACGACGGCGACCGATTTTCTTCATCAATCCACGGTAAGTAGCGTGGTCTTTTTTGTGTTGTTTGATGTGTTCGTTAAGGTGGTTGATTTCCCAAGTAAGGACAGCAACTTGAACCTCTACTGAACCTGTATCACCTTCGTGACGTGCATATTGTGCGATGATTTCATTTTTTTTCTCTTTTGAGATTGCCATGATGTTTCTCCTTTTTATTTGGCTTCATCCGAGTGACAGGTTGGCATGCCTGTAACCAAGAAGAAGTTATTTGTCTTTACGACA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTAGTCTCCAAAATTATGACCGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 39858-40795 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJNU01000004.1 Streptococcus mitis strain KLC11 D8852_contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 39858 29 100.0 43 ............................. GTTGCTTCCTACAACAAAAGCCAGAACCTCAATTCGTGATTCT 39930 29 96.6 47 ............................T TTGACTGTCTCCTATGAGACTTTTTAATTTCTCCCAGCAGCTCTTTG 40006 29 100.0 43 ............................. AATGTGGGTCTAGGTAATGTGGCTTCTCAACCTGACGTGAATC 40078 29 96.6 35 ...C......................... TCTATCTCCCACGTTAGGATATGATGAAGCAAATT 40142 29 100.0 61 ............................. ATTATCTTTGGGCGACGATCTGAAGTGTCCCAGTGAGTGACTTGAACACTATAAGTTGGAC 40232 29 100.0 43 ............................. GCTTGTCCCCAGAGTCCGTTAGTCTCTGCGTCGAATGAGAAAA 40304 29 96.6 49 ...C......................... TTCAGAACCCACATATAGAACTCACCTTTCGGTGACAATCCTGCTTCTT 40382 29 93.1 46 ...C......G.................. TCACCATCGACCTTATAGTCGATGACCTGAAAATCTTCTTTTGGAA 40457 29 96.6 54 ...C......................... TTGCATTGTTGACAACCCGGCTGACCGTAAATTACTATATCCATTTTAAGTTCT 40540 29 86.2 44 ACCT......................... CTCTTTGCCTTGGTTCATTTTATTTGCAATGCGATGAGCTTTTT 40613 29 100.0 40 ............................. AAACCAGATGGACATATAAATCCATGGTCGGCCAGCACAT 40682 29 100.0 56 ............................. GAATGTTTAACTATAGAGGGATTAAATATTAAATATTGTGTTTCTAGTTTGAATTT 40767 29 86.2 0 .........................GTTG | ========== ====== ====== ====== ============================= ============================================================= ================== 13 29 96.3 47 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : CATGCTTCAAATAATCGTCCTTATAGTTTGCATCTGGATTTTGCGGATTATATGAAGCCAGTTATCGTGGATCGAGTGATTTTGAGCTTGATCAATAAACATCAAATTAATACTACAGATCATTTTGAAGAAAGGGAAGACGGATCGGTTTATCTGAATCGTGAAGGGAAGTATATCGTCTTGCGAAGTTTTGAGGAAAAGCTACAGACGAGGCTAGTCATGGGAGGCTCGACCTATACCTATGCCCAGCTCATCCAGCACGACATACGGCAGTTTAAGAGAATATTGCAGCAAGATGGGGACTTGAAACGCTTTAAACCCTACAAATACTATTAAAAAGTCGGTCGATCTTTTCGATATTTTGTATATTTTTAAAAAGCTGTCAACCAAGCGTTTTATGAGCGATGGGTACAAAAAGATCGACCGACTTTTTTCATCGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATACTGTT # Right flank : GCTTCAACTGAAAAAACTTGCGGGAGCAAGTTTTTTGTGGTATATTGGAAGTGTTTTCATGAGGAGATATTTGAATCGGAGGTTGTTTATGTCTGAGAGTCAATCTGTATATAGTCACCATATCTTTGTCTTACCCTTTGCGGCCAAGGAACTGGAGTCTTTTCCGAAGTCTTCCAAGTGGAAGAAACTCAGCCAAGATGCTAATGAGCTTCCCTATCTAAACTTAGAAGATGCTGAAAAAAGCGAGCGGTTAAAGTACGCTTATCGGCGATATTTCAATAAAGAAGCAGAGGAGCTGATTTTCCGCAATCCTGAGCTGGTCACAAACTATGCTTATACTGGCTTAGAAAAAGGTGATGTGTATCGGATTTCTTATTATAATCAAATCAACAAACTTGAATGTTATGATCTGACGCTTGACTATATCATGCTTCGTTATTTTCCAAATTTAAAAGCAGGTTTCCTGATTTTTTCAATGGAAAATCGTTACTATGATGAAT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.25, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : GTTCTACCTTACCTATAAGGAATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 42864-43115 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJNU01000004.1 Streptococcus mitis strain KLC11 D8852_contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 42864 29 100.0 46 ............................. ACTGTCTTTATTGAAAAGAGCTTCTTGTAACAACATTTTTATTACC 42939 29 96.6 46 ..A.......................... TTTTTCAATATTTGTATTTGACATATCATAAAATTGACTAATGTAT 43014 29 100.0 44 ............................. GTTTCAAACTTAGGAATGTTGTTTACTACAGTTATAGTTACTTC 43087 29 96.6 0 ..A.......................... | ========== ====== ====== ====== ============================= ============================================== ================== 4 29 98.3 46 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : TATTATCTTGACATACGATGTACATCGCAAGCGCGTGGCTAATGTTTTGAAAACTTGCCGAAAATACTTGGTTCATGTGCAAAAGTCGGTCTTTGAAGGGCATATTACTCCAGCCAAGCTGAGCGCTTTACAAAAAGAATTAGCCAATATTATAGAACCTCAGACAGATTCTGTACAGATTTATCAGTTGGAATCCGCAAAATACGCCAAGAAGATCCAAATCGGTATGATAGAATCCAATGACTTTATTCTTTAGGGATTAAAGTGATGTCATAGTCAGTCAATCAATCGCATGAAGTGTTCTCTCCATGCGATTTTTCTGATTTTATCTTTCAAAAAGTCGGTCAATCTTTTCGATATTTTGTCTCCTTTTCAAAAGCTGTCAACCAAGCTGTTTATAAGCGTTAGGACAAAAAAGATCGACCGACTTTTTTCATTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : CACTGTCTTCCATTTTAAATTATGTGGGTTTGGATGGTTTTTAAGTTCTAGATTACCTATAAAATATTGTCTGTGTGTCTTTGTCTGTCTCCAAGGCACCAAAAAGCGAGCAAATTCATGTCTGCTAGGAAGCCTGAGAATTTGTTCGCTTTTTGTTTGGTAGGAATAGTTGAAATTTTTAGAAAACACAACATATAATATGAATAAAAGTTGTAGTATAGCTACTTCCTTTTGTAAGAATTATCAAGAAAAACTCCCTTAGTAGGAGAATTTTTCGTGTTTCAACCACAGATAGTATAGAGCTTAAGTTAGATGGCTGATCAGTTTTTTGTTACTTCCTGATAGTGTTGCGAATATTTATTGGCCTATTGGGTTAAAGTAAAAACATTCTTTTCTATTTCATTTACTGAAAAAGAACAGCTATCCAGCAGCTGATCCTTCTGTACTCGTCCTTTTTCAGCTTATCTATGGTATAATAGAAGGTAGATTTATCAATTGGA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : GTAATACCTTACCTATAAGGAATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //