Array 1 111869-114264 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTDY01000001.1 Campylobacter fetus strain 12S01908-5 NODE_1_length_745996_cov_176.103_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 111869 30 100.0 35 .............................. GCGATAATCTAAAGACAATTAAGGATATGGGTATT 111934 30 100.0 36 .............................. CTTGATGAGTACACGGCTATAATGGAAAATGGAAAT 112000 30 100.0 37 .............................. CAGCTCAAGACTCATTGCTTTACGCCTTGTTTTCATA 112067 30 100.0 35 .............................. TAGTAAAATATTTCCGCAGCATTTATTTTTTTAGC 112132 30 100.0 35 .............................. TAGTAAAATATTTCCGCAGCATTTATTTTTTTAGC 112197 30 100.0 36 .............................. TTTGAAATCTCCTAAAATTTTGTATCCGTACTCTTC 112263 30 100.0 35 .............................. CGGCTACCTTGTTTTAAATCAATTATCATTTTTCA 112328 30 100.0 35 .............................. GGTGAAATAGGATTATCAACATAATAAAAAGAACC 112393 30 100.0 35 .............................. TCAAATGCTACTTCTATTATTTTTGAGCTGTGTGG 112458 30 100.0 35 .............................. CTATAAAGCTCATGGAACAAACTTCGCTCTTCAAA 112523 30 100.0 36 .............................. GTAACATACATAAAATCAGCTATTTTATTTAAGCTA 112589 30 100.0 36 .............................. TCAAGGACAGCTTGTTTCTAATACTTATGGCGGTTC 112655 30 100.0 35 .............................. TTTAGAAATTTAATGTATAATTGTATGAAAATAGG 112720 30 100.0 36 .............................. GAACTTACAGAGCCAAAAATTGAAGACAATATTTTA 112786 30 100.0 35 .............................. TTCATCAACAGAAGAAGAAGCAGAGCGAGAAGCAA 112851 30 100.0 35 .............................. GGTGTAATAGATTTTACAAAAATAGTAAATGCGAT 112916 30 100.0 36 .............................. AAACTAAAAAATGGCTCTATAATCCCATTTAAGGAG 112982 30 100.0 36 .............................. AGATAATGCAGTTGTTTTTAAAAGTACTGACAAGAT 113048 30 100.0 37 .............................. TAAACTGTTCTGTAAGCCCTGTTATGTTTCCACTACT 113115 30 100.0 37 .............................. CACTTATAAAATCCTAAATTAGGCTTATCCGCATTTG 113182 30 100.0 36 .............................. TAATAAATATCTAACATTAGCTATCTAAATCTTTAA 113248 30 100.0 35 .............................. AGTTTAGCTAGAAGTATAGGGGTAAGCTCCGCAGC 113313 30 100.0 36 .............................. TGGCAAGCCAAGGCAAAATAACTGCCTATAACGTGT 113379 30 100.0 36 .............................. TATAGCCGTGACCCGTAAATTTAGTGGTGCAAACGG 113445 30 100.0 36 .............................. TTAAAAGTTCTAAATATAAAATCGTGTGCGTATTCT 113511 30 100.0 39 .............................. TAGATATATTTGCATCAGCTATATTTATAAAGCCTAGAA 113580 30 100.0 35 .............................. CTTTAACACATCAGGCAAGTTTGGCAAGGACTTAT 113645 30 100.0 37 .............................. AGATTCTTTAAATAGTGCTATACTTTCTTTGCAGACA 113712 30 100.0 35 .............................. TTTTTTCTCCTTAATCTATCTTATATCCACCATTT 113777 30 100.0 35 .............................. ATACAACTCTAACACCTTATGCTAAATTTGTCCAT 113842 30 100.0 35 .............................. TGCTTATGTTGAAAATGAGTTAATACAACGTGGCT 113907 30 100.0 35 .............................. CTAAAAGGGAGCGCAACCGTGTACTTTAGGAATTT 113972 30 100.0 36 .............................. TCATTTTTATCAAAAACCTTGTTATCCTTTGTATAA 114038 30 100.0 35 .............................. CCAGATATTAATATTTCAGCTCCGGAAGAGCTTGA 114103 30 100.0 36 .............................. ATTGCTAGAAAACGGGCAAATAAGTCGCAACAAATG 114169 30 100.0 36 .............................. AAAAAATCGAACTAGAAAAAGCTACTGTTATAGAAA 114235 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 37 30 100.0 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : AATGGTGAAATTGGTAGACACGCTAGACTCAAAATCTGGTACGGGAAACCGTGTGTCGGTTCGAGTCCGACTTTGGGCACCAGAGGGTTTTGTGGCGACTTCGTATTTTCTCATATTTTCCTTACATTTTTCATATTTCTATTTCTCCCATTTGCAACCTAAATTCAAATAATTAAATTTTAATTTATAGCAATAATAATATTTATATACCACTAATCACAAATTTATATTTTATATTATATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTTTTTTATTATTTATGGCTATATTATATCTACAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTCAATTGCTTTTTTAAATTTGCTTAGATGATGAGTTTATTATA # Right flank : CAGAGCAAACATGGCAGATACTTTAAAAGAGAAGTTAAAAAGGGGTATTATCTGCAAATACTAGCTACTTTGAGGGTGTGAGCGACCACATTATAAGCCAAATGCAAAATATCGCAAGAGTAAATCAAGCTAGTAAATATGGCGTTACACACTACAAAGTAGTAGCAAGGATAGATAGCCGTACAAGTGATATATGTAGAAGCATGAATGGACGTATAATCCCTGCTAGCCATATAGAACGCCAAAGTAACAATATCCAAAACGCTAAAAGTATAAGCGAGAAAAAAGGTGCTGCTATTTGGAGAAATGAGCCGTTTTTAGGTAAAATGCTTCCAAGTAACTTTGGGCTTCCACCTTATCATTTTAGATGCAGGACTGAGCTTGTGCCTGTGTGGATTGATAGCGAGGAGATAGATGGTGTAACTATGACAAACACAAGCTCACTAAATAAAGATGAAGTAGTAAAGCATATTGATAAGACTGGAGTTGAGCGAGTGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 124664-127252 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTDY01000001.1 Campylobacter fetus strain 12S01908-5 NODE_1_length_745996_cov_176.103_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 124664 30 100.0 36 .............................. AAATTTATGAAACTTTTATTAATGTATTTTAAGACA 124730 30 100.0 35 .............................. TTACATAAATCAGAAACTAAGCCAATGCTAAAAAA 124795 30 100.0 35 .............................. CAAGGGCGTTTTTAATACTTCCAGCCCCTACATTT 124860 30 100.0 37 .............................. TTTTAATTTTTAGTGCTTTTTTTATAGGTGTAATTTA 124927 30 100.0 36 .............................. AAACTTATTTACATTCTGGGCGGTGGAATCCAAAAT 124993 30 100.0 35 .............................. CGTTTTTTAGAATTGCGGCTGCTCTTGCTGTGGTT 125058 30 100.0 36 .............................. ATGACGATAAAGATTGGTTTGAGCAAGCGGATTATT 125124 30 100.0 35 .............................. TTTTTAACAATTACATTAAACGGCTGTTTCCGAGA 125189 30 100.0 36 .............................. AACGCCTACAAATTTATATAAAGAAGCAACAAATGA 125255 30 100.0 36 .............................. AAGCTAGAAATCTTTTTAAATACAGTCTCTTTACAG 125321 30 100.0 36 .............................. ATGGGCAATTTTAAAGTATTTATAGAATAAGTACCG 125387 30 100.0 36 .............................. CGCGATAAAAGAAAAAAATCCGCATTGGGACATACT 125453 30 100.0 35 .............................. TAAACAGCTAAATTTACTTTATAATTATTCAGAGA 125518 30 100.0 36 .............................. AACTACAAAAAACTAGAGTTAAATGGATTTGAGAGT 125584 30 100.0 36 .............................. AAGCTTCGATGCAATCTCCGCTATCCAGCCTATCAG 125650 30 100.0 35 .............................. TCTTTATATCCGCCAATATAAACACCTTGATCTTG 125715 30 100.0 36 .............................. TCTTAAACAAGCTGGATTAAAGGCGACTAACTATAA 125781 30 100.0 35 .............................. TTGACTTGTTCTAGTGTTAACAGTTGCCTTTTTGG 125846 30 100.0 36 .............................. CCTCCATGTTGGGTAGGTATTGTTTTACCCAGTATG 125912 30 100.0 36 .............................. CGTTTATGATACTGAAGAGATATGTGAGAACGCTAA 125978 30 100.0 36 .............................. TCTTATAATCGGTTATAATTTCACAAAATAAACGAA 126044 30 100.0 35 .............................. AGACGCAATAATCGAAATGGCTTATCAGCTTGGCA 126109 30 100.0 35 .............................. ACTATTAACAGTCCTGTAAAACCTGTAAAATTAGC 126174 30 100.0 35 .............................. CTAAAAGGGAGCGCAACCGTGTACTTTAGGAATTT 126239 30 100.0 36 .............................. AGCTAAAGCAGATAAAGCGTTTAATGCTAAAGGAAA 126305 30 100.0 36 .............................. GTATGTAGTTTATGTAGTTACGAAAGATTTAGATAA 126371 30 100.0 36 .............................. AAAGTGTAAAAGACTACGCAGATATGTCCGCTGCAA 126437 30 100.0 35 .............................. ATGAATTTTTCTCCTGCTGACATAATTGCTATAAG 126502 30 100.0 36 .............................. ACGTTTTGGAAGCTTACAACGCCACTAAAAGAATTT 126568 30 100.0 36 .............................. CGGACAATGCGGTAGTAGCAATGGCAAAAAATATCA 126634 30 100.0 34 .............................. TACCAAAAGCTTACTAGCTACGTAACTAGATATT 126698 30 100.0 36 .............................. TGTGGAATACAAAGAAGAAATCTTCCTTTAGGGTTA 126764 30 100.0 35 .............................. TCTGCGGAGTTTAAAGCCCTTAAAGTCTGGACTCC 126829 30 100.0 35 .............................. TAAACAGCTAAATTTACTTTATAATTATTCAGAGA 126894 30 100.0 35 .............................. CCACCATAATACCAGGAAAAACTGCAAAAACAGCG 126959 30 96.7 36 .....................C........ CCTTTTAGAGGATGTTCTTTATATGTATTTGGTAAT 127025 30 100.0 36 .............................. CAGGGTATTTTTTTAAATACGCTTTATAAACTGCGT 127091 30 100.0 36 .............................. CTCACGATGAGTTCATCTCTAAAGAAAAATATATCT 127157 30 96.7 36 ......................A....... TTATCTCTACGCCACACTAGGAGTTTTAAAATATTT 127223 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ===================================== ================== 40 30 99.8 36 GTTTGCTAATGACAATGTTTGTGTTGAAAC # Left flank : TCCTGCAAATTTTATTAAATTTAAATCCGAGATAGAAAAATTAATTGACAAAAATATCGATGTTATTACCGTTTTAAGGCTTATAAGAAAAGATGACGTAGATGAGATAAGTATAGGCGGTCTTGATTTTGTCAAAAATGAGATGTTTTTATAATCCAACTCAATTTTAATGTTAATTTTAAGTTTATATTAATAATAATATTTATATACCACTAACTACAAATTTATATTTTATATTATATTAAGCTTTTTCCAACCTAATTTTAGTTAAACTTTTAAAAACATAGATAAATAGTTTAAATTTAATGTTCTTATGATATTTAACTTATTATTGTTATTTTTTTAATTTAGATTGGAAAATAAATTTATTTTTTTATTATTTATGGCTATATTATATCTACAACAAATAATCTATTTTTAATAGTTTTAGATAATATCTTTTAATTTATTTTTTATCTCAATTGCTTTTTTAAATTTGCTTAGATGATGATTTTATTATA # Right flank : TATGCTCGCTACTGCTAGTTTAAAATATATAATTATTAAATTTTGAATAGCAGTTTTGCAGCATCATTTTATGTTTTTGAGTATTTTTATAAATTTGAAAGAGCTGTTATAAGCAGTAATTCTAAAACAAACGGCTCAAGATGCTAATTAACTAAAATTATATTTTTTATATCTTTGGTCTGATATAAAATATTATATAAATTACTTGCAGTAACAATAAAGCAATTTTTAATTCCAAATAATAGAAATTTTTAGCTAAACGTAATGAAATTTAGCTATCATTATACGAAAGATTTTTACAAAGGTGAGTTGATGATACATAAGATTCTAATAGCCAACCGTGGCGAGATCGCTGTGCGTATAGTTAGGGCATGTAAAGATTTGCATATTAAAAATGTTGCGATTTATACAGAACCAGATCGTGAGTGCTTGCATGTAAAAGTGGCCGATGAAGCATATCAGATAGGCAAAGATCCTATAAAAGGTTATCTGGATTCTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATGTTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //