Array 1 2561070-2563050 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014051.2 Salmonella enterica strain FDAARGOS_94 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2561070 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 2561131 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 2561192 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 2561253 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 2561314 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 2561375 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 2561436 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 2561497 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 2561558 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 2561619 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 2561680 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 2561741 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 2561802 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 2561863 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 2561924 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 2561985 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 2562046 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 2562107 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 2562168 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 2562229 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 2562290 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 2562351 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 2562412 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 2562473 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 2562535 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 2562596 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 2562657 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 2562718 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 2562779 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 2562840 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 2562901 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 2562962 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 2563023 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2579183-2580720 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014051.2 Salmonella enterica strain FDAARGOS_94 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 2579183 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 2579244 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 2579305 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 2579366 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 2579427 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 2579489 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 2579550 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 2579611 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 2579672 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 2579733 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 2579794 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 2579855 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 2579916 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2579977 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2580038 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2580099 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2580160 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2580222 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2580325 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2580386 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2580447 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2580508 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2580569 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2580630 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2580691 29 96.6 0 A............................ | A [2580717] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //