Array 1 1933306-1932874 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP006942.1 Mannheimia sp. USDA-ARS-USMARC-1261 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1933305	    36	 100.0	    30	....................................	CGACAAACATCAGCCCATTTATTCGTTGAA	
   1933239	    36	 100.0	    30	....................................	TCACAACCTCTAGATAATTCGCTTGCCACA	
   1933173	    36	 100.0	    30	....................................	TTTGTGCGTGATGATTATAACAACGGCAAC	
   1933107	    36	 100.0	    30	....................................	GAAATCAAGGTTGGCATACAAGGCGATGAA	
   1933041	    36	 100.0	    30	....................................	TTTTCTCAATAACGCTCGTTGTTGTGCGAC	
   1932975	    36	 100.0	    30	....................................	AGATTGGCAAGTTATATTAGATAGTTTTGA	
   1932909	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
         7	    36	 100.0	    30	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   ATTTGCATTCGGGCGACGGATAGAGCAGTCATTATAAGCGGCAAAATGAGTGGGAGTGAGAGAAACAACTTGATTGTCTTGGTAGCCAATGGTACAAATCAATGCTACTTCAGGCTCAATTTGCAGATTATCCGCATCGGTAGGGAAATTAATCGCAGTATTTGAAAGCGGATAAGTTGATAAGAACTGATAATCCCCCAAATTCTCAGCTGGTACATAAAATGGAAAAATTGCTTTTGGTTGCACAGCTTCAACGGTTTTTACTTTTACGAAATCCGCAGCTTCACCTGCTTGCTCCAAGTGTCCGGCAAAATTACCAGCTACACCTAAACCGATAAAATGTTCCATAATCTACTCCTTAATTGGTAAAAGTTGGATAAAATTCTACCGCTTGCGAAAGAAAATTGCGAATATTTATTTTATCTAATTTGGGTTTGAGGTGAGTGTTTCTCATTTCGCAGTGCTACAATCTTCGGTAAAGATTTTGCGATTTAGCTCTT
# Right flank :  CCTCTCGCTTAGGGTCTTATTTATCAAGGGTTTTGCGAGGGGCAGTTCGATAAAAAATTGAGCTAGAGCCCTTTTGTAAGCGGTTATTTTTCTGAAATTTTTTGCAAATTTTGCAGATTTTTTTAGAAAAATAACCGCTTGTTTTTGCCAAAAATGGCTGAAAGTAGGCATTTGGGTATGATGTTTAGGTTAAAAATTCAGCAAACAAACCAAAATTAACGATGTAGCATAAAATTTTTTTATCCTGTCTTTTTCCTAAAAGAGTAGCATTTGGTTTGCATTGACTTTTTCCTCTTGTGGTTTTAATTCACCGACTAACAATAGCATTGAGGTAAATTGTTTTTCGGTGACTTCCAAGCAACGCACCGAACCTTCTTCCGGCAGGTGTTGGGTGAGACGTTTGTTATGTTTTTCGAGCGAGTCCCGCCCTCGTACAATTCGGGTATAAACCGAAAGTTGCAACATTTGATAGCCGTCTTTGAGTAGAAATTGCCGAAATT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.5   Confidence: HIGH] 

# Array family : NA
//