Array 1 71783-71267 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADCYA010000017.1 Escherichia coli strain PBIO1943, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71782 29 100.0 32 ............................. CCTCAGAAAACACCAGTGGAAAACAATATGAA 71721 29 100.0 32 ............................. GCAATAGCCTGGGCCGGGCGCGGATTTAGTCA 71660 29 100.0 32 ............................. GCATCGCTGTCTCAAATAATTAATCTGGGGGA 71599 29 100.0 32 ............................. CGGACTTATTCCCCTTTCGGGTGTTTTATTAG 71538 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 71477 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 71417 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 71356 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 71295 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAG # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16638-15999 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADCYA010000081.1 Escherichia coli strain PBIO1943, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16637 29 100.0 32 ............................. GTACGAGGATTTTTCGACGCTAATTACAGATA 16576 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGTGGGC 16515 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 16454 29 100.0 32 ............................. CCGCCGGTTACTGCCCCGGCGTTCACTGCCGA 16393 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 16332 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 16271 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 16210 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 16149 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 16088 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 16027 29 89.7 0 .......G.................C..A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAC # Right flank : CCATATAGCCCGTTATATCGTTCTCAAGTTTGTATATTAGGAGTAGTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATCAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTAATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //