Array 1 703272-704493 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822023.1 Streptococcus thermophilus isolate STH_CIRM_368 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 703272 36 100.0 30 .................................... TTGTGAATGAATTGTTAGTTTCGAGTATTT 703338 36 100.0 30 .................................... TTTAATTTATTTAATTCCTTCTTATTGACT 703404 36 100.0 29 .................................... TGCTAAAAAACAAGTAGATAATCTTTCTA 703469 36 100.0 30 .................................... CAAACAGCACGAATAGTAGACGAAGCTATG 703535 36 100.0 30 .................................... TCTTGCTGATAGCAATAGCTTTCTTGATTT 703601 36 100.0 30 .................................... TATTCTGCGCTCAAAGCCTTGTCTGATCAT 703667 36 100.0 30 .................................... TTAAATGATGAGATTAAAACATTTGAAGAA 703733 36 100.0 30 .................................... TAGAAAATTGTGAATTTACTTTATCGTTAT 703799 36 100.0 29 .................................... TGATCCACGGTGGTATAAAGATGGTAGTA 703864 36 100.0 30 .................................... CAGATAGCGCCTTTGAATATTAATGGTGTT 703930 36 100.0 30 .................................... ATCTAATGATATTATACTATGACATTTAAA 703996 36 100.0 30 .................................... TGGCTATTACCACGGATGCCAGTAGAAGCT 704062 36 100.0 31 .................................... CAGCTAACAAAACGCTTAGAAAGATAGTTGG 704129 36 100.0 30 .................................... CTAAAGGTGACGACTATCGTTTCAAAGATA 704195 36 97.2 30 ...................................T GACATGGAACCACGATGTCGTATTATTCCC 704261 36 100.0 30 .................................... TTTACTACGGTCTTTCCTGCACGCTTAGCA 704327 36 100.0 29 .................................... CCTTTGAGATGTAGCATTAGTATCTGTCA 704392 36 100.0 30 .................................... TCTGTGTTATTGACTTGTTTGTTGTAATTG 704458 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCATACCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAGATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTACAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 943183-944004 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822023.1 Streptococcus thermophilus isolate STH_CIRM_368 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 943183 36 100.0 34 .................................... TAATTGCAAAGAGGTGACTGTGATGGATTTAACA 943253 36 100.0 36 .................................... GGTAGTCACGTAGTATGTTTGCCACCTTAGTATTAG 943325 36 100.0 33 .................................... AGATATTTTGAACCGCTTAGGGGGTCAAACAAT 943394 36 100.0 36 .................................... TAGAGGGAAGCCGTCTGACAGAAGAACAAACTAGCT 943466 36 100.0 34 .................................... AGCAACTTTTCAACGCTTCAGACGGCAACTTTTG 943536 36 100.0 36 .................................... ACAAACTTGGTTCATGGGTACCAAAAGTACCAGAAG 943608 36 100.0 35 .................................... GTTTTCGATAACCCTTAGGACGTGTCAAAACTACA 943679 36 100.0 38 .................................... GCGTGCTTCGTATTTGCGTTCATTTTCTTCCCATGATG 943753 36 100.0 37 .................................... AAACTAGTTTTCATCAACTATGAAGGTTTCAAGTCCG 943826 36 100.0 35 .................................... CAATCCACAATCTAATGCGATACCCACGGTAATTA 943897 36 100.0 36 .................................... TGTCCGCTGGATATTTATCGCTTTAGTAATTTTCAT 943969 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 12 36 100.0 36 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATTGAGGGTTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGTCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCATAAGATATGGG # Right flank : CTGATGATGCAAAAAGAAGTAGCGGACCGTATCTCAGCAGAACCAAATACCAAAGCTTACGGTTCACTTTCAATTGCGGTGCAATACTACATGACAGCAAAAATTGCTTTCATCGTGCCACGTACAGTCTTTGTGCCAGCGCCGAACGTTGATTCAGCCATCCTCAAGATGACCCGCCGTGAACAACCACTTGTTCAAGTTAAAGACGAAGATTTCTTCTTCCGCATTGCTAAAATCAGTTTTGTTCACCGTCGTAAAACCCTTTGGAACAACTTGACAAGTCACTTCGGGAAGTCAGAAGAGGTCAAGACCAAATTAGAAAAGGCTCTGGAAGCAGCTGGTATCAAGCCGTCCATTCGTGGAGAAGCTTTATCTATTGCCGATTTTGCAAGATTGGCGGATGCCTTAAAAGAAGTCGGATTATAATGAAGAGACCCCAGCCATTTATTGTGGTTGGGGTTTAAAAATCTTTTAATAGCTTGTCTTTGTAATAATTAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 1032198-1031312 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822023.1 Streptococcus thermophilus isolate STH_CIRM_368 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1032197 28 100.0 33 ............................ TATTGGAAAAAGCGTTTGGTTAGTCCCACAAAA 1032136 28 100.0 34 ............................ GGAGGAGACGTATGTTTAAAAACAAAGTGAAAAA 1032074 28 100.0 33 ............................ AAGCTATTTACGGTATAGGGCTAAAAGAACCAC 1032013 28 100.0 34 ............................ TAAGGTCCATATTGACGACGGTGAAGCTTCTAAA 1031951 28 100.0 33 ............................ TTAGAGAGGGGCTTGCTAGATGGCAGATAAAAC 1031890 28 100.0 33 ............................ AGGTACTCTATCCAGTTGAGCTAAGGGTGCTTA 1031829 28 100.0 34 ............................ CTCAAGAGGTGCTTCTGTTATGCTTCCATCCTTT 1031767 28 100.0 33 ............................ TATCAGTGATAATAGCGTCTAGCTTGACATCTT 1031706 28 100.0 33 ............................ TTGTACTCTTTGACGAGATGGTTAATTTGTTGT 1031645 28 100.0 34 ............................ ACTGCACTTAGTCTTTCAGGATTGGTAGAGAGCC 1031583 28 100.0 33 ............................ CGATGTAGTCGTTTAATTTCGATACCTCAGCGT 1031522 28 100.0 33 ............................ TAGGAAGGAAATTATCTTTATGCCTTTAGTTAG 1031461 28 100.0 33 ............................ TAGAAGAATAATTGCCACAGGTAATTCGTTATA 1031400 28 100.0 33 ............................ TGGCGGTTCAATTTTCGATGACCGTACAAAAAC 1031339 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 15 28 100.0 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GAGAAAAAGAATACAATCATTGAGATTGGAGCTGTCAAGTTTAATGGACAACAAGTAGAGGAATTTAATGCTTTGATTAAGTATGAGAAGAAATTACCTCCTACAATTTTTAAATTGACAGGTATTTCTAAATCCTTATTAGATCAAGAAGGACGTGATTTAAAAGAAGTACTTTCTGAATTCTTATTGTTTATTGGTGATTTAACTTTAGTTGGCTATAATATCCATTTTGATATTCAGTTTATCAATAATAAACTGAATAAATTTGGTTTACCCTTATTAATAAATAAAACTCATGATATAATGAGATATGTCAAGGATGAGAAGTTATTCTTGGATAATTATCAATTGCAGACTGCCCTAAAGTCATATGGAATCGAGGATTCAGTTCCTCATAGAGCTTTGAAAGATGCTAGACTAATCTATCATTTATCAACTAAAGTAAATAAATTCTTAGCTAGAATGAAAGAAAAGTCTTAATTCCATTGGGATCTTTTAGT # Right flank : TACAAATTTAGGTCATATGGAGATACGACAATATCAATCGATTGGTTGAGGTCTCTTTTTAGATTTGTTAATTAGTTGATTACTTTTTAAGTATTGCCGTTGTAAGGCAGCATATCTTAAAGATAGAGATGCTGTAAAACCTTCTCATAGACTACTACATATTGTTTTAGAGCTATGTTTTTTCTAATGGTTCCAAAACAATCGCTTTATCTTTATATGCCCACCCAAAAAAAAGAGCCAGTGGCTCTTTTTAAATATCATCTCAATAACCAGGTTCAAAGATTTCAATAATTTGAGTCAGATAACCTGCATGTAAACCGATTCGATAGTCAACATTTGGCAAAGTCTTAACCAAATCATTCAGTTCTTTATCTTTGCTAACCTTATCAACCAAAACTGGTAATTCAACGACAAGGAGTTGTGAGTGATCTAGTTGGAGGTAACTACTGTTGACCTTGATATCAGGACGAAGTAGTTTAAATATCGCTTTATCCGAAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1464234-1461293 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822023.1 Streptococcus thermophilus isolate STH_CIRM_368 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1464233 36 100.0 30 .................................... ACCAGTTGAAGGAAGACTAGCTTGTTTAAC 1464167 36 100.0 30 .................................... GCAAACATTGGAAGATTTTGCTAATGGTAA 1464101 36 100.0 30 .................................... CTGAGAGCCTCTCAGAGCTATCTGAAGCAG 1464035 36 100.0 30 .................................... GTTCTCTTTTGTTTTTCGTTCAATATCTCA 1463969 36 100.0 30 .................................... TTATATCTAACTTTATAAGAGAATACTTCT 1463903 36 100.0 30 .................................... TCCCTTCTTAATAACAATTTCATTGTTGGT 1463837 36 100.0 31 .................................... CCTAAAAAACGGTGAAAATCGTTCTCGACAA 1463770 36 100.0 30 .................................... TTTCAGAAAGTGAAGCCTTGTGGCTAACGC 1463704 36 100.0 30 .................................... TTTAAAGCGTCCGAATGTTAAGCCAAAATA 1463638 36 100.0 30 .................................... ATTACTTCTTGGGTCAATAATTTTATTTCT 1463572 36 100.0 30 .................................... TTGTGGTAGCGGTAAAGGAAAAAACAAGAC 1463506 36 100.0 30 .................................... GAATAATAAAGTGTCAAAAAACAACAAGTT 1463440 36 100.0 30 .................................... AAGCATGGTCGTCAATTCGCAAGATAGCTT 1463374 36 100.0 30 .................................... TTTGACGTGTGCCACTACCCCTTGTAGTTA 1463308 36 100.0 30 .................................... TAAAATCGATATTTCTCTAACCTTCCACGG 1463242 36 100.0 30 .................................... TATTTTGCTAAAAAACCAACGCAGATTTTT 1463176 36 100.0 30 .................................... GATAGTGCTACACATACACTACGCTACAAT 1463110 36 100.0 30 .................................... GAAAGAAGTGTTGACTGATGACGACTTGAC 1463044 36 100.0 30 .................................... TTTAACCCAGACTGGTGCCAAGAGGTATTT 1462978 36 100.0 30 .................................... AGACTATAACATTGTTCTTATCGGCGATAC 1462912 36 100.0 30 .................................... TATTTCACTTATACACGCTCTAATAAGATG 1462846 36 100.0 30 .................................... AAAGCTATTTGCGGATGAGTATTTGATATC 1462780 36 100.0 30 .................................... GGAATTAATCACGAATGCTATGGCTGACTT 1462714 36 100.0 30 .................................... AGTGAAATTTAACGAAGTAATGCATAAAGT 1462648 36 100.0 30 .................................... TTGGCACTACACCTCAAACAGTGAGTGCAT 1462582 36 100.0 30 .................................... CCGTTTCAAAAAAGGAGTTGCTGAGCGATA 1462516 36 100.0 30 .................................... CGTAGAGAAATAGAATAGGTGGCGCGTGTA 1462450 36 100.0 30 .................................... GATGTAGCGCTAGTTTGCGGGCAATTGGAT 1462384 36 100.0 30 .................................... CGTAGAGAAATAGAATAGGTGGCGCGTGTA 1462318 36 100.0 30 .................................... GATGTAGCGCTAGTTTGCGGGCAATTGGAT 1462252 36 100.0 30 .................................... ATCAGTAATATCAAGGGTTTTAGAACCCTA 1462186 36 100.0 30 .................................... CTTACTTGCACAAGCATGTTTCAATCTTAT 1462120 36 100.0 30 .................................... CCGCCGCTTGGAGTAGTAGCTTGCAAGGTT 1462054 36 100.0 30 .................................... ACACGTTGCAAGAAAATGTTGACTCTACTT 1461988 36 100.0 30 .................................... TAATCCCGACAGGAACGTCATAAGATACGT 1461922 36 100.0 30 .................................... TAGACATGCTGATGATGGTACTGGTATCTT 1461856 36 100.0 30 .................................... GGTGGTGCTACACATACACTACGCTACGCT 1461790 36 100.0 30 .................................... GGATGATGCGATTAACGAAATGCACAGATT 1461724 36 100.0 30 .................................... GTTTCCACTAAAATGCGTGTCTGACATGTC 1461658 36 100.0 30 .................................... TAGAGGTAATGACGGACTGCCTGGCAAGGA 1461592 36 100.0 30 .................................... GTTTCCACTAAAATGCGTGTCTGACATGTC 1461526 36 100.0 30 .................................... TAGAGGTAATGACGGACTGCCTGGCAAGGA 1461460 36 100.0 30 .................................... TAACGCATTGACTAACTGGGTGACAGCTCT 1461394 36 100.0 30 .................................... ATATCCTTGTGTTCTTTCATGGTTGTGTAA 1461328 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== =============================== ================== 45 36 99.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTACTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGATCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //