Array 1 125212-124388 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRY010000025.1 Pectobacterium carotovorum strain CFBP6074 Pectobacterium_carotovorum_CFBP6074_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 125211 28 72.4 34 ..T..G.T-.T...TT.A........... TGGCTGCGCAATTCTGTGATGTGTGGCAATGCGA 125149 29 93.1 32 A.C.......................... TCCATGCCTTTCCACTGGAAGCGCTCAAGGAT 125088 29 100.0 32 ............................. GTTTGAAAACTCGGCATCAATCAGCGAGTCCA 125027 29 100.0 32 ............................. GCTCAACGCATCGAGTCTCAATTGCTAGGGAA 124966 29 100.0 32 ............................. CTATTCCGGTGAGGCGGCTGATACATACAAAC 124905 29 96.6 32 .............T............... CGCAGCATATCTCAGAACAGCCTTTCTCACAT 124844 29 96.6 33 .............T............... AGAAATCTCAAAATCAGGTGGTTATTCTACCGA 124782 29 93.1 32 .............T..............A TGGAATGAAACACAAATACCAGTCAGCCAAAT 124721 29 93.1 32 ............TT............... CTCAAAGAAACGACAGCCGTTTTTCTCGTAAA 124660 29 100.0 32 ............................. AAATGAGCGTGGCCATATGCGCTGGTATAAAG 124599 29 93.1 32 ......A....C................. TTCGTTTTTGATACCAGTGAGCTTGAAGATAT 124538 29 100.0 32 ............................. CGCGATGTGATTCAACAGTTCGGCATCAGCGA 124477 29 93.1 32 .A........T.................. TTCAGAGATTGCCAATCAGATGCGCCGCCGAG 124416 29 89.7 0 .C..........T..............T. | ========== ====== ====== ====== ============================= ================================== ================== 14 29 94.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTATCTCGCACACTTGTGGTTCGCCGTTGATGAGCTCAAAGATAATGCGGTAATCTCCAACTCGTAGACGATACCGTTTGCCAGACGATTCGAGTTTTTTCAGATCCAGATTCACATCTGGAAATGTACTAAGCTCGCCCACTTTGTCTTTGATTCGTCTTCGATATCTGGTGTCAATTGTGCCGAGTTGTTTTAATGCCCGTTTTGACCAACTAACCTTAGTCATGAATCCCTCAAACGAAAGTCTTCCCTGATATAAGTTAATTATAAGACAATTTAACGATTTTTCTTATGTTTTGTTTATG # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCACGGGGTCAAATCCCGCTTTTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCAGTTTTGCACCCACTGTAACGGTGAGGCGCTATGCCAATGATTTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCTGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCTGAGCTGTATGACACGGTTGAAGGCCTTGTCAGCAGTGGGCGGTTGGGACGTGAAGAAGGGTCTGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGGGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCAAT # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127018-126013 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDRY010000025.1 Pectobacterium carotovorum strain CFBP6074 Pectobacterium_carotovorum_CFBP6074_contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127017 29 100.0 32 ............................. TCACAGACGGTACGAGCGGAACGACAGTGGTA 126956 29 100.0 32 ............................. ACGCGACGCTTAGCCATAACGCGATCCTGAAT 126895 29 100.0 32 ............................. TGTCATCGATAACACGATCTTTGGGTAGATCA 126834 29 100.0 32 ............................. CGTTAAAAGTGAGAGTTTTCTCGGTAATAAAT 126773 29 100.0 32 ............................. GTGATGCCCAGATGTCTCACTTGCGCGGCATT 126712 29 100.0 32 ............................. CATGCTGATAATCAGAGCGGCCTGGGCTTCAA 126651 29 100.0 32 ............................. TAAAATCGTTTCAAAATCCAGCGTTTCGATAA 126590 29 100.0 32 ............................. GTAATCGCAACACATCGAACATTTACACGTTA 126529 29 100.0 32 ............................. TTGTTTTTGCGCGATGGCTATGTCGTCCATGC 126468 29 100.0 32 ............................. CCCGCCGATATGGAAATTCGCATCGTGCCGGA 126407 29 100.0 32 ............................. GGGGCAATAGAATTAATTGCCAATGTAGAAGG 126346 29 100.0 32 ............................. TCAAAACTAACCCTCAGATACCAGAAAATGAA 126285 29 100.0 32 ............................. TTAAAGGCGGGTACTGGACGGCTCCAGAGGTT 126224 29 100.0 32 ............................. CGCTGCTCCATGCTGTCGGCGTTGGTCTGCAC 126163 29 100.0 32 ............................. ACGGGAAATTCACATACAGCAACGCGAGTGAG 126102 29 100.0 32 ............................. AGGAAATTGATGGAAACACTATTTGCGCTGGT 126041 29 89.7 0 ..A..........T..............C | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGATGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGTGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGTCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTACGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTCTTTATTCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : TAATCCGTGGAAATCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCGTCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //