Array 1 105462-104997 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJQ01000003.1 Selenomonas ruminantium strain S137, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 105461 37 78.4 31 C...G....T..T.....C..A....C.........T TTGAAAGGAGATTGATCACTATGGCAAACGT GG [105453] 105391 37 94.6 36 .................A.........G......... GAACAATGGTGGTCCGTCATCTACTAAAGTAGAGAC 105318 37 97.3 34 ...........................G......... AGCAAATTTTAAAATTGTAGCACAAGCATCCACA 105247 37 100.0 34 ..................................... AAGGAAACATACCAACTATGCTGAAGGAGAACCT 105176 37 100.0 34 ..................................... GATGAGTGAATTCACTCAGGACGTCAAGAAGGAA 105105 37 100.0 35 ..................................... CATGAGAAAGTACTACGAAGCAGATACCCTTGCAG 105033 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 7 37 95.8 34 GTTACGATACCGCAAGCGGTAGTAGGGTACTGTCGAC # Left flank : GCCACGCAGGCTGTCAGCAGAATCTGCCGTGTCCACTTTACTCCTTTCGGCCTTCAGCATCTTCAGCGCCTTAGTTAGTGCAGAATTTTGGCTTGAACGGGTGTAGCTCTTCAAAAGACGATATTGATTCCTTATCTTTTCGCTGACAACCGATTTTGCTAACTGCATGGACATATCATAATCTTCCAGGCAGGCAAATTGTTGCCTAATGACGGCAACAGAAGCATGTTCATTGGCTAACTGGCCTAGAAGCTGCCATTTCTTATTTAAGAAGAAAATGGGGATGTTATTTTCCAGACATGCAAAAACAGCCGGCGTAGAAATATTGGCCGCCGGTCCTACGACTATTGAAGTCAGCGAGCGGATGGGCATACGTCCAACCAGCCGGTTTTCTTTTTCAATTACAAGCCTGCCGCCATCTTTGCGGACAGTTGCTCCTTTGGATAGTAAATAAAGCACACCCATGGCATATCATCCTTAAGGTATGTAGAGTTTTGTTT # Right flank : GGCGATGCTCAGGAGCCTTGTGTGGCCTGGCCTCTCAACCCTATTTTTGAAAACCTTCGCCATTTTTGGTTAAAATCCTGCTTACTGTCAAAGTTTTTGTTTTGAAAATCCATAATTTTTGCCTCTCAGTTCTTGTATAATAAGCCTTCAGCGTGTCCACGGAAAAAACTGAAAACCTCGACGGTAGAATGGGGCTTGCGAACAGGTAGGGGAGGTTTTCAGTTTTTTGTTGATTCTTCTGTTGAGGAATATTATCCTGCCGGCATTATATCACGAATGGTTTGAGGATGCCATAGCGTTTACACGACAATAATAGGACGGTCTTCCTCTAGTGGTCGGCCGTGCATCAGAATATCTTTTTCGCAGGCTTTGCATACAGGAATAATCATCAGGAGTGGATTGGTGGCGCCGTCTGTTATCTGTTTCAGTTCCTGCCAGATATTCTTGATTTCTTTGTTATCACATTTACAGGAGAATACACTGAACTGAATGCGAAAAGC # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACGATACCGCAAGCGGTAGTAGGGTACTGTCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.00,-5.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 48190-48397 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJQ01000016.1 Selenomonas ruminantium strain S137, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48190 28 100.0 32 ............................ GCCACGGCAAAAACAAAGCCAATAATCTTAAT 48250 28 100.0 32 ............................ TTGTCCGTAGTGTCAATTATTAATTTCATTTG 48310 28 100.0 32 ............................ CTAAAGGGACATATCTATTAGCAACTGGTTCT 48370 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTGCTCCGCCGAATAGGCGGCTTAGAAA # Left flank : CAATTCAATAGATTCCGTGAAGGCGCGCAGGATATAGAATTATGCCTTAAAGCACAAGATGATGGTACTGTACGTTTTTGTGAACAGAGTGAAAAGACAGGAGAGTGGATAGAACGCGAGGAGTGGTATCATATCCATAAGCAAACAGATGAAGTCAATGAACGGTTTTGGCTGCAACGCGATTATCAGCAGTCATTAGCAGCAATTCAAGGAACAACGGGAAGCGATAAAATCAAAATCCAGGCAGGTCTTTTGCATCTGCCAGCTAATCGTGAAAAGGCAGTATGGCTGTATTCGGATCAGTTCGGTATGTATGATGAGGAAGAGGACTTTCAAACGTAATGCAGAATAACAACCATAGGAAGATTTACCCAAAATTTTGCCAGCCTTCGCGAGTCCTTATAGAATAAGGACTGGGCGAGAGAAGAAAAATTAGGGTAAAATGTTGCAAAAACGGCATTAGAGCTGTGCTCTGTAGGGCTGATCAGTGGAATTTTGCA # Right flank : AAGCTGGTGGCGTAGGTGGGGGTATACGACATCTATCAACCAGGAGACTTTGGATGAAGCCCCCATAGCCTATAAATCCCTGTCGGATATATTAGATGTAATTGGCGATACGGTGGAGATTATCGATGTGATGAAGCCGGTGTATAACTTTAAGGCTGCGGAGTGAAGCGCGGCGTTCTGTTGACAGATTAGTTGGACAGGAGAGATAGTCTTTGCTATAATGCAAAGAAGATTGTATAGAAGGGCGGGATGTGATGAATTTTCAACTGATGTGCAAGGATATTCCTGTGGCTGGTTTTACCATAAATGAAGCAACAGGGCGAATTGTCAGCGATTTGGATATTGATAATCGTGAATACCTGCCTTTGTCCGTGTTGTTTAGTGACAGCTATCGCATTGCTTTGCAGAACTGGATAGACAATCGCAGCGTGTCAGCTCATCGAAAAGATGTGGCAGCTATGTTGGCGGCTTACCATGTGGAAACGCCGAGTGCTTTGTCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCGCCGAATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 2 53805-54073 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNJQ01000016.1 Selenomonas ruminantium strain S137, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53805 28 100.0 32 ............................ ATCTATGAACCGAAAGGAAAGGCGCGAGAATA 53865 28 100.0 32 ............................ AAAACCACACCTACTACTTCGGCCAGCATGGT 53925 28 100.0 32 ............................ GGAGGACATGGCAAAGTACAAGCAAGCCGCAG 53985 28 96.4 33 .................T.......... CCACTGCACAATCAGTCCCGAAGCATACTTGAC 54046 28 78.6 0 A..........C.....A..T.....TG | ========== ====== ====== ====== ============================ ================================= ================== 5 28 95.0 32 GTGTTCCGCCGTATAGGCGGCTTAGAAA # Left flank : GAAGATGAATTGAAAGCGTTAGCGATAAGGAAATGGCTGCAACGGTATGAAGATTACATTCATATGACCAGCATCCGTCCTGTGCCGAAGCGGGTGAATGGCTATGCAGTTTATCGTCGTTATCATCCGGAAGCAAGTTCTATGCAGAAGGCCAGACGCTACGCCAAGCGGCATAATGTATCTTATGATGAAGCCTTGAAATTATTTCCGCAAGAATGCAGGGATAAGAAAGTTCCCTTTGTGCAGATGCATAGTGAAACGAATCAGCAAAAATATCGCCTTTGTATAGAACGCATTGTACAGGATTCGGATCAGGACGTTGGTTTTGGCAGTTATGGTCTGGATAACCAGTCAACTGTGCCGGAATTTTGACCAAAATTTCAGCATGGTACGGGAACCCGCATAAAATAAGCGTGTGGGAGAAGGGGTAAAATTAGGGTGAAATGCTATAAATCTGCGGTAAGAGCTTATTTTACGGGGATCTTTAGCGATTGAATGCA # Right flank : GCACAAGACGTTGACTTTTGTTGCTGTATAGGGTAAATTCATAAGTATGATTAAGAAAAGCAAACACCAAGGAAGTATCGAAATGGAGAAGTTTTGCCGGGATATCTGGCGTACCATTGAAGATACGATTTTTGAACAACATGGCTGTCTGCTGCCGGCTGGCGATATAACAGTAGATGTGATTCTGCACTGGAACAAGGAGGAAGTGTTGGGATCGTTGAAACGCCGGGGCAAGATTGCCAGTTGGGTACAGGACAGAGAATTTGAAGATGGCAACATGCGCAGATACAAAATTATCGTAGATAGCGAGAAGATATGAAGGTATTTTTTAGATGGTTGTTGCACACAAAAAATTCGTATTTGTTTGATCAAGCTATGAAATATGGTATTTTGTGAAGGCAGAACTGCTTCAGCATATGCCCATTCATAATACATAAAGCCGCTCCGCTGATGGGTTGTCAGCAGGAGCGGCTTTTGTGGTGGTAGTCTATTTTTCAGTC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCGCCGTATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //