Array 1 29267-30005 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QXQN01000012.1 Riemerella anatipestifer strain RCAD0152-1 Scaffold12, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                                	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	===============================================	==============================	==================
     29267	    47	 100.0	    30	...............................................	AGTGTTTTTGATTGGCTTTCAAATATAAAG	
     29344	    47	 100.0	    30	...............................................	TAACCCGCCAAATCGCCTGTTTGGAAAATA	
     29421	    47	 100.0	    30	...............................................	TATTGTTGCTAAATGCTCTTAGTATAAAGA	
     29498	    47	 100.0	    30	...............................................	ACACGCACGAGGCGTAATTTATGTACGAAA	
     29575	    47	 100.0	    30	...............................................	TCTGGCGGCGCCACCCAAAAAAAGTTGTCG	
     29652	    47	  97.9	    30	..................A............................	GCCTGTGCCTGTGCGTATGAGTTAGAGGCT	
     29729	    47	 100.0	    30	...............................................	GTGTCGCTAAACTTTAAATTTTCGTGATAT	
     29806	    47	 100.0	    30	...............................................	GCTATGGGTGCGTGGCTAGACTTTGTAGAA	
     29883	    47	 100.0	    29	...............................................	GCACAATTCACACTTAAAAAACAAAATAG 	
     29959	    47	 100.0	     0	...............................................	|                             	
==========	======	======	======	===============================================	==============================	==================
        10	    47	  99.8	    30	GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC	                              	       

# Left flank :   CTGTTTATAAATGTTATACCGGAGAAAAAAGACAACTATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATCGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGCGTAAAGCGGCTCAGCTATTCCGAAAACGGCTTGAAGACGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGCCCAAGTCGTGAAAATGCAGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCACGGTAAGGTGGCTATCATGAGTATTACAGATAAACAGTTTGGAGATATAGAAATTTTCTTTGCGAGAGCTAAAGAAGAACCCAAACCAACCTATCAGCAATTAGAACTTTTTTAGAAACAGAAAAAAGGATTTACTAAAGTAGAAATAGACAAGAAATAGTGAAAAATCTAATCCTAATAAAAAGCAAAACCCATTGAAAAACAACGGGTTTATTTTTTGAG
# Right flank :  CTATGCGGTTTGTCATCACTAGAAAACAGATGGCTTAAATAACTTCTATCTAGTAACAGGTCTTTTGTTAGGTCTTTTCGTTTAATACCTAGCTCTTTTATCTGTTCCTGTATCCACGAGGTATGTATATCTTCTATTTTCATAATATTATTTTAAGAAGATGTATATCATTCCTGCTAAAGCTAAAAAATAAATATTATCTGCTCTAAAGATAAACTAAATCTAATAGTTATATCTTGCTCAAATGGTTCTTTCGAGAAAATATTTTTAATCAATTTTATAAATTCTTTCATTTGAAAAAATATTTCTAAATTTGCCTTTAGAAGTAAGGGGGACAAAGCCTCCTTTGTTTCAGGATATAACAGACTGGGAATTTTCTGTTTCATCTCGGCTTTAAGTTTCGCAACAAACTTAAAACCTTTTTCATTTTCATAAACTGATTTTGAACTCAAAATCTAACTTCATAAAAAATAAATTTAAGCTACAAACTACCACAAAGA

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:68.09%AT]
# 	Reference repeat match prediction:         R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-6.30,-6.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,4.87   Confidence: LOW] 

# Array family : II-C [Matched known repeat from this family],   
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