Array 1 1323-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCHE01000010.1 Acinetobacter cumulans strain WCHAc060001 10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1322 28 100.0 32 ............................ AAGAAAATTAATAATTTTATTGCACGTTCAAG 1262 28 100.0 32 ............................ TGCAATCTAGCAATCTCGGCTTCCTGTGCTAA 1202 28 100.0 32 ............................ TGGTTGGAAATACACGATTTCGCCAAGGCGCT 1142 28 100.0 32 ............................ TAAAATACGCTCTGCATCTTCAATAGTGATAA 1082 28 100.0 33 ............................ CAATAAATAATCATAGCCGTTTTTATCTACCAT 1021 28 100.0 32 ............................ AAAAACATTTCCGCAGAATGCATTTGTGACAT 961 28 100.0 32 ............................ AGAGACATACTTGCTACCATCACCAGCGAATG 901 28 100.0 32 ............................ TTGGAGTGAAATTAAATCAGGTTTATTCGCCA 841 28 100.0 32 ............................ ATACGATGTATCTTTATAGCTAATTAGATAGT 781 28 100.0 32 ............................ TTTCATAACACGATTACAAACATCTGCATTAA 721 28 100.0 32 ............................ AAAGCTGTTCTAATTCTTCTTTTGTAAATTCC 661 28 100.0 32 ............................ AAAAATGACAAATCCGCTTGTTGCAGATGCAC 601 28 100.0 32 ............................ AGAGGATAATCCGACAACCACGAGGATTGTGT 541 28 100.0 32 ............................ TACAAGCAAAACGACACAATCCCGCAATTAAT 481 28 100.0 32 ............................ ACGTAGGATGCTTGCAATGATGCTGGAGCTGG 421 28 100.0 33 ............................ ATAGAAACATGATGCTTTGTTATGTTGTTGAAT 360 28 100.0 32 ............................ TACTCCAAAACTCGAACCTGCATGCTTTGTTA 300 28 100.0 32 ............................ ATGACTCACCTATTTTTTGATTGCCTGTGGCG 240 28 100.0 32 ............................ ATATACTTGGATTTGGGTTCACCGAATTGCAC 180 28 100.0 32 ............................ ACTCAAAGATAAAGCCCGGCAAACGCTGGGTT 120 28 100.0 32 ............................ ATCTACACCAAGAGCCCCACCCCACCACTTAT 60 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 GTTCACTGCCATGTAGGCAGCTTAGAAA # Left flank : TTGGATATTCGAAAATGGTTAGATCGTTTAGAAGATTATGTACATATCACTTCTATTCGTGATGTGCCTAGCGAAATCAAAGGTTATGCAGTTTATAAACGAAAACAAGTTAAAACTAATGCACAGCGTTTGGCTCGTCACCGTGTAAAACGTGGTGATATTGGCTTTGATGAAGCACTTGCTCGATATAGCAATGTGGTGACAACAACCAACTTGCCGTATATCGAAATGAAAAGTTTAAGTACGTCTGATCAGCAAAGTGAAAAACGTTTTAAATTATTTATCGAAAAGCAATCTGCTGATAAATCTGAAAATCAGGTTTTTAGCACTTATGGATTAAGTTCCGAATCATCGGTACCCGAATTTTAACCCAATATTTTTTTACTCTTTAACAGCTTAATAAAATCAATAAGTTATGATAGTGGTTTAAACCTTGGGTCTTTTTATAGATTTAAGGGTTAAACTGCTGTTATAGCTTTATTTTTTGCTATAAAATTACT # Right flank : AATTTCACGATGATGAAAGCACCGCCAGTAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37048-34259 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCHE01000038.1 Acinetobacter cumulans strain WCHAc060001 38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37047 28 100.0 33 ............................ TTGCTGATCATAAGCAACAAGATGACCCCTGCT 36986 28 100.0 32 ............................ TCGCAAAGTTCCATATTATGTTTCAGGTAAAA 36926 28 100.0 32 ............................ GAAAAGATTATCCAAAGCCCGCCCAACACAAT 36866 28 100.0 32 ............................ AAAAACGATAGTGGTAACGCAAAGCCTCCCTG 36806 28 100.0 32 ............................ TCTTAAAGTGTATAAACCTGAACCATCAAGAT 36746 28 100.0 32 ............................ TTGGCATAATTGGGTTGGCGTTCGTTCATGCT 36686 28 100.0 32 ............................ TGAAAGCTCAATTGTGTGCTCAACTGGAGCAG 36626 28 100.0 32 ............................ ACCAACCGTCTGAATAAGTCAATTCACCTTGC 36566 28 100.0 32 ............................ ATTGTTTTTCCGTGTCGTGGTGGCTTACTACT 36506 28 100.0 32 ............................ ACCCAATTAACAGCATCATTTGAAATCTGAAT 36446 28 100.0 32 ............................ ATTCATTACAAGCTTTTTGTTTAGATAGTTAA 36386 28 100.0 32 ............................ ACGGCGTTCAAAAAAGAAACTTTCGAGTTGCT 36326 28 100.0 32 ............................ ATCTGGTAATAATGGTGGTGCTGAATATGATG 36266 28 100.0 32 ............................ AATGGCCACTTGGATCGTGAACATACTCAACA 36206 28 100.0 32 ............................ AATTCGTGTGTTTATGAAGTCGATCCAAATGC 36146 28 100.0 32 ............................ TTTCTTTTTAAAATCACGATAACGCTGTAAAA 36086 28 100.0 31 ............................ AATAGGATTATAGATATGAACGAATTACTAG 36027 28 100.0 32 ............................ TAGAAAGGTGATCTTCCGCGCCTTTCTTCAAG 35967 28 100.0 32 ............................ ATGTCTGGGCTGAATGGTTTGTTGATACTGTA 35907 28 100.0 32 ............................ TCTTAAAGTGTATAAACCTGAACCATCAAGAT 35847 28 100.0 32 ............................ GAAATTAAGCAAAAGGGAGCGTTGTATTCAAA 35787 28 100.0 32 ............................ TTGATCTAAATTCACAGTTAATTGATGTGAAG 35727 28 100.0 32 ............................ TTTTTGATAAAAACGTCATGGTCTAAATTAGT 35667 28 100.0 32 ............................ ATATAGGTAGTCATACCTGTTGCATACCCCTC 35607 28 100.0 33 ............................ TAAACGGATCACAGGAAACGGCAATTCTTGTTT 35546 28 100.0 32 ............................ ATGATAGAGCAGGCCAGCATCACATAAAATTG 35486 28 100.0 32 ............................ AACAGGTGCATCAGGTGATATTTTGACCGTAG 35426 28 100.0 32 ............................ ATGATATTGAATACAAGTTCAATTGCAATTTT 35366 28 100.0 32 ............................ AATCGGCACAATGGTCGCGTCAATGACAGTGG 35306 28 100.0 32 ............................ CGAAGGCTTCACAGATAAAACACGGCCTTGCC 35246 28 100.0 32 ............................ TGTACGGCGAAGCGCAGGTTGTCAAATATCCC 35186 28 100.0 32 ............................ AACAGGTGCATCAGGTGATATTTTGACCGTAG 35126 28 100.0 32 ............................ GCGGTTTGCGAGCTGTTTTGATTTTCCATAAA 35066 28 100.0 32 ............................ CAAAAAATCTGCCGCCTGTTCATCTGTAAGCC 35006 28 100.0 32 ............................ TACATCAGCGGAAGCAAAGGTGTAAACGCCTG 34946 28 100.0 32 ............................ AGTCTTCAAACCTTTACGAACAACAACGCGAT 34886 28 100.0 32 ............................ AAAGCACAAGTGCAGTCGCAATGAAGATTGCA 34826 28 100.0 32 ............................ AACAGGTGCATCAGGTGATATTTTGACCGTAG 34766 28 100.0 32 ............................ ATGCGGGACTTCTATACAGATCACATCTGCTT 34706 28 100.0 32 ............................ GCGGTTTGCGAGCTGTTTTGATTTTCCATAAA 34646 28 100.0 32 ............................ TTCGGGCATAGAAGTAGGTAAAACGATTAATC 34586 28 100.0 32 ............................ AGCTACGCAAGAAGTTCCTAGAGGATCAGCAA 34526 28 100.0 32 ............................ TAAATCTTTCACGCGCCGTGATTGTTGGACCA 34466 28 100.0 32 ............................ AGATGAAGCATTCCAGCAGTCCACGAAAGGCT 34406 28 100.0 32 ............................ TAGAATGTCAGGTGTAATCAAAATGAAAACAG 34346 28 100.0 32 ............................ GCCGTATCTTTGTAGACAGCACAGGCTGTTGC 34286 28 89.3 0 ..........GAA............... | ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.8 32 GTTCACTGCCATGTAGGCAGCTTAGAAA # Left flank : | # Right flank : TATCACAAAGGTACTACCTACAACTCCTAACCTAATTATTTACAGATAACTAAATTTTCAAACATAAAAAAGCCCTAACACGAATTAGGGCCAATTTATGCAAGCTTTGGGTTTAAGTTTTAAACCGCTTCAGCTTCTAAAATTTCAAAATCATGGGTAATTTCTACGCCACCGTCCATGAGCATTTTGCTCGCAGAACAATATTTTTCAGCAGAAAGCTCAACCGCTTTTGCCACTTGTTTTTCTTTTACACCTTTACCAGTAACTACAAAGTGCAAATGAATTTTGGTAAATACAGCAGGAATTGTGTCTGCACGTTCAGCGCTTAAATCACAACGAACAGCCGTAATATCTTGGCGTGCTTTCTTTAAAATGGTCACAATATCAAAAGAAGCGCAACCACCAAGGCCATTCAAAATCAATTCCATTGGACGCGGACCGCGATTTTCACCGCCGTATTCTGCCGAACCATCCATGATTATGCTATGCCCGCTCTGAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 390-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCHE01000169.1 Acinetobacter cumulans strain WCHAc060001 169, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 389 28 100.0 32 ............................ AGGCATTATTGCACCGCCTGACCGCAAGCTCA 329 28 100.0 33 ............................ ATTCACTTGTATGTATCGACACATAGCTTCTAA 268 28 100.0 32 ............................ AAAAGCATCGCGGATTAATGGTACGTTATGAC 208 28 100.0 32 ............................ AATTGCCAAGACGATTAAAGCTGATCCCTATT 148 28 100.0 32 ............................ ATCTTCAAGCATCTGCTTTGGAAATTCATAAA 88 28 100.0 32 ............................ AATACATACCATAAAAACAATAACTTATATTT 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTTCACTGCCATGTAGGCAGCTTAGAAA # Left flank : | # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //