Array 1 4705-5207 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQNA01000203.1 Streptomyces corynorhini strain AC230 Contig_203, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================= ================== 4705 29 100.0 32 ............................. GTGCCGGTGCCGCATTCGCCGTCGGTCGGCGT 4766 29 100.0 32 ............................. GGCCGCGCGGTCGTACAAGGGCTGTGGTCCGG 4827 29 100.0 33 ............................. GCGATGGTCCCCGGACCGATCGCGAAGGCCCTC 4889 29 96.6 32 ............T................ CAGCAGGGGACGACGGTGACCGGGCCCAGCGG 4950 29 96.6 32 ............................A CGCTGTCCGGGGCGCTCCTGAACGAAATCGTC 5011 29 82.8 135 ............T.C......T..T.T.. CCCCCTCCTGCACTCGCGGGAGGGGGCGTTCGCATCTCTTGGGTCGGACTACTGGAGGTCGAGGATCATCACGTCGTACAGCGGCGAGTCCGGGAACGGCAATTTCTCTCCGGCGTGCTTGTATCCCCAGCTCTC ACA [5034] 5178 29 72.4 0 G.A..G.G....GA........C.C.... | G [5204] ========== ====== ====== ====== ============================= ======================================================================================================================================= ================== 7 29 92.6 50 ATGGTCCCCGCGCGTGCGGGGGTGGTCCG # Left flank : GACCGACCCGGCGCTCACCGTCGGCTGCCCCGAGATCGAGGGCGCCTCGGCCGCCTACCGGGACCTGCTGCGGATCCGCACCACGGAACCGGCGTTCGGCCTCGCCACCACCCGCGCGGTGCAGAGCGCCCTTTCCTTCCCGCTCTCAGGACCGGACGAGACCCCCGGCGTCCTCACCGAGCGCCTCGGCGACCTCGTCGTCGTCATCAACGCGACGCCCGCCGCGCACGACCAACGGGTGCCGGACCTCGCGGGCCGCGCCTACGCGCTGCACCCCGTACAGGCGACGGGAGCGGACCGTACCGTCAAGCGGTCGTCGTACGAACGGAGTTCGGGCACCTTCACCGTGCCCGCCCGTACTGTCGCGGTGTTCAGGGCGGGGTGAGGCGCGGGCATGACCTGATGGGAGGCACGGCGACGTAACGCTGTCGGGTATGTTCGGGCTGAGCTGACTGATGCTGGCGGTGCTTATCCGGCGCGAGAGGCCCAGGTCAGGAAGT # Right flank : GGCGTACCAGCAGCTTGCATCGGTCCTCGTTCCGCTGGCTCATCAGCTCGGAGTGCATGACCTGTGCGATGCCCCGGCCGCGCCATTCCTGCCGCAGCATGATCTCGCAGAGCCCGAACGTGGTGGTGTCGCGCTCCGGGCGCCCGTACGTGAACCCGGCGACCACGTCGCCCACCTCGGCTACGACGCAGCCCCAGCCCGTCACCGCATGCATGCCGAGACGTTCCTCGAACCGCTCCAAGCTGAAGAACGGGTTCGTGGTGATCTCGTCGGCGTAGACATCGGCGTACACGTCCAGGAGGATACGGCGGACCGCCGGGGTCAGCTGGTCGTAATGGCTGGTGGTCAGTAGGTCTACGGTCATGTCACTACCGCCTCGTATCGCTCAGAGAAGTCCGTCGCCCCCGCTGGACGGCGGATTAGCAGATCATCGCGGAATGTAGCGAGGCCCGCCGTGACGCGCGGGCTGCGCCCCGGCCGCGCCATTCCTGCCGCAGCAT # Questionable array : NO Score: 4.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:-1.73, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGTCCCCGCGCGTGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ATGGTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5032-5365 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQNA01000258.1 Streptomyces corynorhini strain AC230 Contig_258, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5032 29 100.0 32 ............................. GACATCCCCATCCCGCTGGGCGTTCTCTCCGG 5093 29 100.0 32 ............................. CTGAGTCCCTTGCACCAGTAGTCGAACTTCAG 5154 29 100.0 32 ............................. CGATCGGTTGCCCGGCCCAGAACCAGCGGCAT 5215 29 96.6 32 ........T.................... TTCGACGCGGGATTCGTGGAGGACGACGGCTT 5276 29 100.0 32 ............................. CGCGGCGACCGCAAGGCGACCGCGCAGGACGC 5337 29 93.1 0 ........................G...T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGCTCCCCGCGCAGGCGGGGGTGAACCG # Left flank : CGGGCATCGGCAGCTGTCCTGGCTGGTGGTCGCTGCGGCCGAGGGGCGTGCGATCGGCCACGTACCTGCCCTGTGCTTGTCGGCTGCCGAGGCGGAGCGCAAGGGCATCGGCGAGCATGTGGCAAGCCTGCCCGGCCTGGAGGTCGAGCCACTCGACCTGACCGCCGCGCTCGACGCGGGCGCCCTAGCCGGTGGCGGTACCGACTGGCAGATCACCCACGCGGTACATCTGGCCCGGCCGTCCGCAGAATGGCCGACGGGCCGGTCGGTGGTCTCGCTGATGCCGGATCGGTACGAGGGCACGGGCGTGGACCCGATCGATCCGGATGACATCTGAGCTTGATGTACAAGCCCTCGGGGTAGCTGCCGGGGCATGGGGGACGGGTGGCGTTCAGGTGCATGTGACCTCCCTCTGCACGGGAGTCTGAAACGATGAGGATATGACGAGAAGTGCGGGTCAAAGAACGGCAAAGCGCCTCTGAGGCCCCAGGTCAGGAAGT # Right flank : TGCCTGCAACGCCCATGCGGTTGGGACATCCCACTGTCCGGCGGCTTCGGGCCAGCGGGGATTACTGCTACGGCCCGGCTCCACTCCCGGCCCCGGCCCCGCCGCTTCTGCCCGTGGCCCGGCAGAAGCGGCAGGGGATGATCGCGATCCGGCCGCCGCGCAAGGTGCGGAGTAGCCGGTTGCCGTGGCAGTTTCCGCAGACGCCGAAGCGCGACGCGGGAGACGCGGAATGGTGCTGGCGGGCGTGGAGTCTGCCGATGGCGGCGAGTTGGCGCCGTTCCCACGGTGTCGCGAGCCGTACGGCACTCAGTCGTGCCACCCAGGCGAACCCGGTGGGGCGCTCCAGGCAGACCCGCTCCCCGGCGAAGCTGGTGATCCTGCCGGGCATGTCGAACGTCCCGTCGTACACGACCATCCCGATGGTCAGCCCTTCCACGTACGCCACCACTCTCCACGGCCTCGGCTCCGGCCACGGCCCCGGTTCCGCTCCATGCGGTGAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCAGGCGGGGGTGGACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9982-10862 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQNA01000117.1 Streptomyces corynorhini strain AC230 Contig_117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9982 29 96.6 32 ............................G GCCCCCGACGGGGGGCGGGGGCCTTCAGTCTG 10043 29 96.6 32 ............................G GAGCGGTCCGGCCGGGGCGCCCGGCCGAAGTA 10104 29 96.6 32 ............................G GGGCTGGCCGTGGGCGTCACACCCGGCGGTCC 10165 29 100.0 32 ............................. CGTCGCTGACGACCCCGGCCCATCATCGGGCC 10226 29 96.6 32 ............................G ATCAGGACGCTGCCGGGCGGCCGGCAGGTGGA 10287 29 100.0 32 ............................. CGCCGATCTCTCGGCGGCGGAGCCACTATGGC 10348 29 100.0 32 ............................. CGCCGATCTCTCGGCGGCGGAGCCACTATGGC 10409 27 89.7 32 ........--..................G AGGTCGCGCGCCAGCGCCGGGGAGAGGTCCGG 10468 29 100.0 32 ............................. TGGTCCATGGTGTACATGCAGGACCAGGTGGC 10529 29 96.6 32 ............................G CCATCCGATGGTGCAGGAGATCGCGCCGACCG 10590 29 100.0 32 ............................. GCGGTGATGGCCCTCAACCCGATCACCCTGAT 10651 29 96.6 32 ..G.......................... TTGTTCCGGGGGAAGTGCCGCAGCGTGTTCGT 10712 29 96.6 32 ..G.......................... GGCCGGTCCGGCGGATCTCCCGCAGGATCGCC 10773 29 100.0 32 ............................. GGGCTCCGGTCCGGCCGTACGGGATGGGTCGC 10834 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.5 32 GTCGTCCCCGCGCATGCGGGGGTGTTCCC # Left flank : GTAACCCGTCACCGTGGGTTCAAATCCCACCGCTACCGCTCTCACACCCTCCTGGTACGCGGAAACGCGAGCGGGAGGGTGTTTTGTGTGCGGTCGCGCGGAACGGAACCAGAAGCGAACAGGCGCCCAACTGCCCCTCGCGGGAGGCACGTTGCGCCTTCCGGTTCCTGCGGAGGGATCCGCCACCTACGGCCGCCGGGAAGGGATCCCGCAGCCCGACCACGCCGCCGGCCCGCCGGCCCGCTGTCCGGACGCGCCCGAGACGCAACGTCCGCGAGGGCACCTCGTCCCGGCGTCACCTGAGCCAGATCACCAGAGCCCAAATCCGTTGAGTTCAGTAGAGTGACGGGACGGCCCTTATCGCTGGCGCCGCCATATGTGGGGGATCGACCACGTTGTTCTTTCTGGCCGCTTGCCGACGGGGCTCGGATCGACGTCTCAGGCCGATCCCACTAAATGAATTCGAGGCTGCGCGCAGATAAAAACCCAGGTCAGCAAGT # Right flank : AGGCCGCCGGGGAGTCCTGGGGCGGGGGCTCCCCTGCTCGAACGGAGTCGGGAGCTTGTCGAGCGGCTTGGGGAAGCAGTTGCCCAGGCTTGCGACCGGCGCGGCCAGCGTGTGTGCTGGACGATGCGACCGGGCAGAGCTTGCTTGCCGGGAGAGGCACTAGGCTCCGATTCCAGGTCTTGGGTGTGAGAGGGGCCGTGACGAAGGCGGGGAACCGGACGTGATGACGAGGAAAGCGGTTCTGCCCACGGGAGCGTCTGCCGGAACGGTCGCGGGGGCGCGCGACGCCGTACCCGCCGGACCGCCCGCGGGTGAGCTGCCCAACGCCGTGTTCGATCCTGCCCGGCTGGCGGCGGTGGCCGCGTCCGGGCTCCTGGACACCGCTCCCGAGGGCACCTTCGACGATCTCGCGCAGCTCGCGCTGGCGATCACCGGCGCGCAGAAGGCGTTCTTCACCGTGGCCGACGGGCGTCGTTCGTTCTGGAAGACCGCCCTCGGCA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCATGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28174-28934 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQNA01000036.1 Streptomyces corynorhini strain AC230 Contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28174 28 100.0 33 ............................ CAGCGTGCCAAAGATGAGTAATTGGGCTGAATT 28235 28 96.4 33 ..........T................. CGTCATGTGGAGCATCTCCGCAGGTGAGGGGTG 28296 28 100.0 33 ............................ CGTGCGCGGGAGGCCCCGGCGGGTCTCCTGATC 28357 28 100.0 33 ............................ CGGCGAGTCCGTCGGCGACCCGATCTACATCGC 28418 28 100.0 33 ............................ CAGCCGATCGAGACGCACACGTACGACAAGTCC 28479 28 100.0 33 ............................ CGACATCCCCGAGAGAAGAGAACATCTCGATGA 28540 28 100.0 33 ............................ CAACCAGGGACCCGGGCGTGGCGCGGACTGGGA 28601 28 100.0 33 ............................ CAACCAGGGACCCGGGCGTGGCGCGGACTGGGA 28662 28 100.0 33 ............................ CATCCCGAGCTGGACCGCGAAGTACTACGGGAA 28723 28 100.0 33 ............................ CGCCAACGAAGCCCTCAATCAGCAAGCCGACGA 28784 28 100.0 33 ............................ CGTCAAGCGCAACCAAGTCTTGAGGCAGACCAA 28845 28 100.0 33 ............................ CAGCTACTCGCCCGGCGCCACCCCGGTCGACGA 28906 28 89.3 0 .............C..........GA.. | T [28914] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 33 CCGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AACTCGCGCTCTGAGCTTGGGAATCAACGGCGCTCCGGAGCGCGACAGTGCCCTGACCAGGGATTACGTGTGTCCGCGAGGTGTACGGGAGCCGGTTGGATTGACCGCTTCTGACCCTCGTGTACCGCCCTGGAGGGCTGGGATGGGGCTGGGTCGCGGAGAGTAACTGCGAGGGCCGGTTCGAGTGCCCCTCAGTCGGTAGGGCGTGCGGCTTCGAGTGTGGGGCCACGGGGCGGTGTGCCCTCGCGAAGGAGCGGAGCGCTTCTGCTCGCTCGCGGTTCAGTCTCAACTCGAAGCAAGGGAGCGCGACCACCCTTGCCGGGCCGTCTGTGGGTGGATCCCGTGGCGGGCCTTACCTGGGACGCCGAGGTGTGAAGGCGTAGCCTGTGGTGTGGGGATGTCTCTGGCAAACAACATGCCCGTTTTTATTGCGTATGCCCTTTTCTCTGATCCTTGCTGAAACAAGCGTTGCCCCTTGATAAAAGTGCAGCTCACGGAGT # Right flank : CCGCGTCTCGGGTCGAGACGGTCCCGTACGGAGCGGGCAGCCGCACCCCCAGAGGTTGGCGCGATGATGGTCTCTACTGGTGGGGGTGGCGGCCCAGCAGGATACTCAGCAGAGTGGTCAATTCGCGCAGCACATCGGGGATTGCTGCCGAGTCGACGCGTTGAATCGTCACGACGGCGATGGTCGTGCAGCCGATGACGATGCAGAAGAGAACGGCCATGAAGGCGTTCATGGAATTAGCGTACAAGATCCCTCCACGATAAATTCGCATACGGACTGGTGTGCGGCAGGTGCAATCAAGAGGCGGGGATGGCTGAACCTGAAGTAATCGAGAGGCCCTCGTCCCCTGAGTGGAGGGAGTATGGCGCCTGTTGACGGGTTGAGTTCGGGATGTCATTGCTCGACGGTATCCGGTCGTGGCGGCACGCGGGGAGGTGACACGCGCGTGGTCGCATCACGCCTTCCATGTTGCTTTACGCCTGCATCCCCGCAGAGGCGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 39650-40287 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQNA01000036.1 Streptomyces corynorhini strain AC230 Contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 39650 28 100.0 33 ............................ CTATTCACCACCGGGTACACCACATGCGGCCCG 39711 28 100.0 33 ............................ CAACCGCCTCAAGGAAGCGCAGACCAAGACCGA 39772 28 100.0 33 ............................ CTCCTCGGGATCGACATCGCACAGGGCGGCGCC 39833 28 100.0 33 ............................ CGCCGCCGCACCCTCATCCGCAGCCTCAACCCC 39894 28 100.0 33 ............................ CAGCGCGTGCATCATCCGCATCTGCGGCGGCGA 39955 28 100.0 33 ............................ CAGGTCGGGGTCGTCCCCGGTGCCGTCGCAGCG 40016 28 100.0 33 ............................ TGAAGGCATGCGACGCCATCGCTGCTGGGGCCA 40077 28 100.0 33 ............................ CATGATCGGCGGCGTCCTCCAGACCGAGCAGCG 40138 28 100.0 33 ............................ CAACCAGGGGCCGGGGCGCGGCGCGGACTTTGA 40199 28 100.0 33 ............................ CAGCCACCCTTCGCACCTGCGGATCCAGTACCG 40260 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 33 CCGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CTCCGACCGTCCTGCCCGCTCATCACCTTCCACAGGCTGGAGCAAGGCGTCCAAGCGTCGCCGTTTCGGCAATCGGGCGCCGTAACTCCCTCACAACGGGCCGACTGTCCGGTTGCGTTTGCGTTTGCGCGGGGAGCTTGTACTGACAGCAGCGTTGCGGTGAAACCCCCGTGTGCCCGTGGCGCCGGCGAGTTCGGCGTCGACACGGGACGGCGGGAAGTGCGGTGGGCGGGTCGGTGTGCAGTAATGCCCGAGCGGCTGGAACCGCCGACACCGTCCTCACTCTCGGTGTACTGCGAAATGCACGGCACACGTGAGAGTTCGAGCTGGGCCATCTCTGGGGGGCGTAGGAGCCTCACTCGAAACCTCTGGTGTGAACACGTAGCCTGTGGTTTGGAGGCATGTCTGACGAATGGCGCGACCATTTGTCTCGTATGCCCCTTTCTCTCATCCTTGCTGAAATAGGGGTTGCCCCTTGATGAAAGTGCAGCTCACGGAGT # Right flank : CCTGCTCCAGCGCGTCTTCGCGGCGGTCCTCGCACCACTCCCCGCGCCGCATCACCTTCGTGAAGGTCGGTCGCCATATCCGGATCGCGGAGAGCCTGCTCTCCGCGTACGTCGTGGCCAACACGGTTGAGCCCCATCCGGCCCCGCCCCCGCCGCCGTAGCAAGGAGGGTGCTCCCAAGGTGCGGGAGTGGCCGGTGGAACGCCGTAAGGCCACTGGAGCGACGACCGTGGCCAAGTCGTACCGGCTGCTGGCTGCTGAAGGCGATCCTGGAAACCGCCACCGATGACGAACTGATCCGCCGCAATCCCTGCCGGATCCGGGGCGCGGGCAAGGAGTCGCCAGAGGAACGGGAGATCGCCACGGTGGACCAGGTGGACGCGCTCGCCGCCGCGGTCGGAATCCGGTGGCGCCTCATAGTTTACCTGGATGCGTACGGTCCCTTGCGGCCCGAGGGGCAGGCGGAGTTGCGCCGTAAGGACGTGGACCTGGACGTCATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 392-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQNA01000382.1 Streptomyces corynorhini strain AC230 Contig_382, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 391 27 100.0 34 ........................... CCTCGTCCGACTTCACCGGATCGGGGACGAAGGG 330 27 100.0 34 ........................... CCGCCTCCGGCTGGACGGCCATAAGGGAGGCATC 269 27 100.0 34 ........................... CCTCGCCCGCACACTCGGGGTGTCGCGGTCCACG 208 27 100.0 34 ........................... CCATCTCCTCGGGTTCGGTCACGCTGGCGGTGGC 147 27 100.0 34 ........................... CCCACGGCCTCAAGCTCCCGCAGCTGCCCGGTGT 86 27 100.0 34 ........................... CCGCGCCGGACGACCAGCGGTACGCGGTGATCGG 25 25 92.6 0 .........................-- | ========== ====== ====== ====== =========================== ================================== ================== 7 27 98.9 34 GTGCTCCCCGCGCGTGCGGGGTTGGCC # Left flank : GGAGCTGACGGTCCCGACGGTCGGCCAGACGGTGATCCTCACGCGCGTCGCTCAGCAGGCCACCCCGATGCCCCCGGGCGAGGACCTGGCCACGCTCGGCAAGAGCGGCGCGCTGCTGGTCCTGCACCTGGCGGCACGCTACGCGGACCGCGTGGTCGCCGAACTCCTCCCGCACTACGGTCCCGACTGCCCGGCGGCGGTGGTCGCGATGGCCAGCCGCCCGGAGGAACTCGTCCTGCGCGGCACGCTCTCCGACATCGCAGACCGGGTACGGGAGGCGGGCGTGGTCCGCACGGCGGTGATTCTGGTGGGGCGCACGCTGGGGGCGGAGCAGTTCGGCGACAGCCACCTGTACTCGGCGGAGCGGGACCGAGGCGGGGAGGATGGGCATGGCGGTGCTGGTGGCTGCTGAGAGCTGTGGCGTTTTGGGCGCAATGCCGGATTCGGTGAAACTGGCTGAGAAGGGCGAGGGGGACGCGTAGGGTCGCAGGTCAGGCAGT # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGTTGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //