Array 1 33484-34853 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZU01000021.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2771 NODE_21_length_69948_cov_1.59457, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33484 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 33545 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 33606 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 33667 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 33728 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 33789 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 33850 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 33911 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 33972 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 34033 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 34094 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 34155 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 34216 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 34277 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 34338 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 34399 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 34460 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 34521 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 34582 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 34643 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 34704 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 34765 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 34826 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51113-51936 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZU01000021.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2771 NODE_21_length_69948_cov_1.59457, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51113 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 51175 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 51236 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 51297 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 51358 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 51419 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 51480 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 51541 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 51602 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 51663 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 51724 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 51785 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 51846 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 51907 29 96.6 0 ............T................ | A [51934] ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //