Array 1 291881-292168 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYK01000001.1 Listeria innocua strain Lin14-004 Listeria_innocua_Lin14_004_Contig01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 291881 29 96.6 36 .........G................... GTTGTTTCACTTCCATCGCTTACACGTCCGACTTTC 291946 29 100.0 36 ............................. ATACCTTATGCAACTTTAAGCAACCGTGATTGGAGT 292011 29 96.6 36 ......A...................... ATTCCTGACTTATTTAAAAGTAATACTTGTTGCATC 292076 29 96.6 35 ...............C............. TTGATTTTTCGAATATCTCGTAATGTCTCACTTAT 292140 29 79.3 0 ......A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 5 29 93.8 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GTGTACGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAGATATAAGCAGAAAACAGCAACTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAACACCGGGAATCGACAGAAAGTTGTAAGTAGCTGGGGGAAGATGTGCTTGGTGATATTTGCTTGGGAAAATCTTCCGGATAAGGGGAGGATTTTAGATGTTTTTTGTTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATTGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTTCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGTTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATTGAACTTAGTTTTTCACTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTATCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCAACTTCACTTATGGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACT # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6334-5375 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYK01000003.1 Listeria innocua strain Lin14-004 Listeria_innocua_Lin14_004_Contig03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6333 36 100.0 30 .................................... AAACTGTGTGAGCAAAGAGAACAGAGCCGC 6267 36 100.0 30 .................................... AAAAGAATAAAAAGAATAACTACGGAGAAT 6201 36 100.0 30 .................................... AATCATTGTTAAATTTGCTTTAGATTATCT 6135 36 100.0 30 .................................... TATCGAGTTGGGTACTTTGAAAATGGCGTA 6069 36 100.0 30 .................................... AATTTAGTTCCGTGGAATAACAACTCGAGG 6003 36 100.0 30 .................................... AAACTGTGTGAGCAAAGAGAACAGAGCCGC 5937 36 100.0 30 .................................... AAAAGAATAAAAAGAATAACTACGGAGAAT 5871 36 100.0 30 .................................... AATCATTGTTAAATTTGCTTTAGATTATCT 5805 36 100.0 30 .................................... TATCGAGTTGGGTACTTTGAAAATGGCGTA 5739 36 100.0 30 .................................... GCAAACACAACGCGATTTTGTTCGACGATA 5673 36 100.0 30 .................................... TCCTAATCGGTAATTTTATATTTGCGTATT 5607 36 100.0 30 .................................... CCAGCTCAAGCCCTCGGCGCTTACGAACCA 5541 36 100.0 30 .................................... CTCGAAAACAGTCACACGTTTATCCTTTCC 5475 36 100.0 30 .................................... GGTTTATATTTGGTATAGTGAAAAATAAAA 5409 35 86.1 0 ..............C......T...A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGCAGAAGGGTTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAGAAAAATTCTACGAG # Right flank : CATCTCTTAACCTACTCCAACTAGAAAAGTTACACCATTATGAAAGAGAGGCCCCAACACATGACACAATACCACTACCTCGCTTCAAAAGCAGCACTAAAAACTACGACATTCGAAAATAAGACAAATTATATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAACGTTGATGAGCGTACAAATGAAAAATTTTCCTACTCCGAACATTTTAACCCAATTTGCAATTTCCAAGTCGCTATAAGTGAAGGGGAATTACCGTTAAAAGGCGAAGAGCAAAATAATGATTATGAATCTAAAGGTTTAAAAATACTACACGATTACATTAAAAAAGCTAGTAAAGAAAGTGATACCCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTCCCTCTGACGAATAAAACAGAATTAGCTATAGAAAATTTAACGCCAGAAAATTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //