Array 1 28-956 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTX01000382.1 Aggregatibacter actinomycetemcomitans serotype d str. SA269 contig0382, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28 28 100.0 32 ............................ TTTATTGGTGAAGCGCATAGTTTGTATGGTGA 88 28 100.0 32 ............................ AAAAACAGGCTGCGATTGGTTTAATGATTTGG 148 28 100.0 32 ............................ TATGTTGCGTAATGATATACGTAATTTTTTCG 208 28 100.0 32 ............................ AGCCCCTGTAGGCAATGCTAATAAAGGATTGT 268 28 100.0 32 ............................ ACGTAAAGGAATTAGTTGCTCAAAATGCTGAA 328 28 100.0 32 ............................ ACATTGGGTTGGTTGGCGTTATATAACTACTG 388 28 100.0 32 ............................ TATTTTCCAATTTATCTAAATGTTTTTTATAG 448 28 100.0 32 ............................ GATAACTCTTTGTCGATTAGATTTGATACGCA 508 28 100.0 33 ............................ CTCTATGCCGATAAATTGGAGTTCTTACACCCT 569 28 100.0 32 ............................ AAATCAGAAAGATAAAAAATGTAAGTCCAAAG 629 28 100.0 32 ............................ CGGGTATTACAGAGCTGCAAAAAGCATATAGC 689 28 100.0 32 ............................ TCTGCAATCAGCTTTTCGGTGCCGTAGGCTTG 749 28 100.0 32 ............................ ATTCAAATGCTGGAAGACGCTGAATTAATCAC 809 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 869 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 929 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.8 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : ATTCGTTACAATGCGTCTTCCTTTGAGC # Right flank : ATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCATTCCTTAATAAGTGGTAAAATACCATCAACAAGAGGATTTTATAATGAAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9079-8847 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTX01000164.1 Aggregatibacter actinomycetemcomitans serotype d str. SA269 contig0164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 9078 33 100.0 34 ................................. GCAGATCGTGGATGGGCAGAACACGGCATGATTA 9011 33 97.0 33 ................................C TTATGTAGGTTATATATTAGCACCTGTTGCTGC 8945 33 100.0 33 ................................. CTACCGGCACCTGGAATTGGTTAGCCAATACCC 8879 33 81.8 0 .......T.....CA.....C...T......T. | ========== ====== ====== ====== ================================= ================================== ================== 4 33 94.7 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : GAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCTGAGTTCTCATCAAATTCCTGTTAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTTATTTGTATAACGAAGATATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTCCTGATTTTCCTTGTTTTTTCAGATAGGG # Right flank : GGCGCTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGTTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAAGCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAAATCATATTTCCTTTCTTTTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCGCCGGTTCGGACAGCGGCGGCGGTGCCCGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCATTTGGTACATCGGTGGCCGCGCAAAATACCTTGAACGTGGTTGATATTTACGCCGTGTCACTCA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //