Array 1 278-5 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AXVO01000015.1 Bifidobacterium choerinum DSM 20434 K312DRAFT_scaffold00004.4_C, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
       277	    29	 100.0	    32	.............................	GTCCACGAATCCTGGAACGAGCCGGTGGTCTG	
       216	    29	 100.0	    32	.............................	GTGACATCGGGGTTGTCTGAGCGTAGGCAGAA	
       155	    29	 100.0	    32	.............................	GAAAGCGTTGAAACCATTGGGATGACGCTACA	
        94	    29	 100.0	    32	.............................	GAAAGCGTTGAAACCATTGGGATGACGCTACA	
        33	    29	 100.0	     0	.............................	|                               	
==========	======	======	======	=============================	================================	==================
         5	    29	 100.0	    32	GTGCTCCCCGCAAGCGCGGGGATGATCCC	                                	       

# Left flank :   CAACGATGTGCGCCTGAAGAACTTCATCGAGATGCGGCACTGGGATTCACTGCCGGTGGAGCGCGCCGAACGGCTCACGCAGATCGTAGGCGACCTGTTCTACGATCCGGAGCGCCGCGGGCGTCTTGAATCGTATTTCAGTGGACTGACCGGCGAGGACGTGCACGCCGCGAAGGCCGTGCTGCAGTCGCGCGGGGGAGACGCGAAACCGTACGACCGGCCGATGGAGTACTGGGCGGAGGTACTGGGCGTCGGGGATACGCTTGATCAGGTGCCGGGGGATGCGATGCGGCCGGAGGTAAGGCAGGGGTAGGAGGAGGCTACTCTAGAAGAGTCCTGCAATTGCGGGAGTGATCCCCCTGTATAGATGTACTTCGGACATGCCCCGCATATGCGGGGAATGATACAGCGGAGGAGGAGATGCGAAGTGCGCCGTGAAAAGTGAATGAAAATGCTTCTCGCTGATCAATGATATGTTGGAAACACAAGGATTTCTTAGT
# Right flank :  CTCCC

# Questionable array : NO	 Score: 5.86
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGCTCCCCGCAAGCGCGGGGATGATCCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [4,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [0.0-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.55   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 1 7-219 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AXVO01000008.1 Bifidobacterium choerinum DSM 20434 K312DRAFT_scaffold00017.17_C, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	=============================	==================================	==================
         7	    29	  96.6	    32	............................C	TCAAACCAAACAAGCGAAGGAAAGTGATTGTG  	
        68	    29	 100.0	    34	.............................	AACAGACGCCGCTTGTTTGAGTTAGCCACGTTGT	
       131	    28	  89.7	    32	T....................-......C	CTGAGCGGGTTCATGAAGGCGTTCACCGATTT  	
       191	    29	  82.8	     0	.......T..........T...CA.C...	|                                 	
==========	======	======	======	=============================	==================================	==================
         4	    29	  92.3	    33	GTGCTCCCCGCAAGCGCGGGGATGATCCG	                                  	       

# Left flank :   GTCGCGG
# Right flank :  GGGTGCGGTTGCCGAAACGGCGGGGCGGATGCAGGAGTCGGCTCAAGTCGTCTCTGTCGAAGAGAGGAGCATACCCGTTTCCGATGCATCCGCAAATACGGAAGAGGATGAGGGGAACCATGGTGGGCAGAATCCGACCGTGGTTTCGGCCCCTGCTGTCCAAACCGGGCCCGTTGCCGCCGCGGTCGCGCCGGCCGGACCTTCGACGCCCGCTGCGCAGCCCGCTGTGCAGGCTGATGGGAAGGTCGCGTTGACCCGTCTCCTGCAGCCTCTTCATGATGAAGGTCTTCTGGACAAATCCATGACCGCGCAGAAGGCCAATCCGATTCTGGCCGCCAAAGGGCTGATCATCCATACGGAGCAGGGCTACTGGATTCCCACTGACTACGGCAGGAAGCTGGGCGTCGAGGCCAGAAGCAATGAACGGGGCGCCACTTGGCCGCTCTACCCACCCGAGCTGGGCATGCTGGTCCTCGGTATGCTGCTATAGGGACCTGTTG

# Questionable array : NO	 Score: 3.66
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGCTCCCCGCAAGCGCGGGGATGATCCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [4,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-12.70,-12.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [1.7-33.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//