Array 1 6276-6529 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPD010000011.1 Microcoleus sp. FACHB-53 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 6276 37 100.0 35 ..................................... GCAATTGAAGAACAGGAGGAAGCTCGGACTTTTTA 6348 37 100.0 35 ..................................... AAATATGGAAAGCCTCGGATCGAGCAAGGCTATCA 6420 37 100.0 36 ..................................... TCGTCTCTGTCTTTCTGAACCATTGGCTTATTCTTA 6493 37 83.8 0 ...................AACA....A........A | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 96.0 36 GTTTCATCAACCCTCCCGCCTTGGGGTGGGTTGAAAG # Left flank : GCTTATTGCCTCTGTACAGCGCTAAGTTAGGGTTTGTTTGACTGCTCGCAAGGCAGTCCTACTTTCTGAACCCTGGAGCTGTCCGGCCCGTGATGCTGCCCTATGAATACCTTCTTCATAGGTGGAAAAGTTCCCGTGTCTGAATACTGAAGTATTAAGTATACGGGAAAGGTGCGCTCTCAGCGAAATGTGGTCGGGCTGAGGGAGAAGGTAAATTTTCCCAAAGCCTTAGCCCTTGTTAACAAGGGTGTGGATTACCACAGTGGTGGCTCCGAACTCGTCCCCTTCGGGGGAGCCCTCCCTAATATTTTTTTGATGGCTCAAAGCGGGGTCAAAATCTCCCAGTAGCCGTCAGTCGTTCAAAACTCTTGTCCCGTCTTGATTTTAGACGTTCATATCACTAATCTTTCTCCTTGGGCAAGAGCTGAAATGACCAATTTAAAATCAGCCGACAAAAATGTATTTGTCAGCTTGTTTGGACAAGGGTTTCAGCGGGCGCG # Right flank : AGCATAGGAAACTACAATACGAAGTACCGCAATTTTAACAAGGGAGGGTTGAAAGGAGCGCCTGCCTTACAACTCAAAAACCGAATATTATTTACTTTAAGTAAAAATCTGAGTTTATTCTCCACAAACAGCGACGTTAATTTGCGAATAGTTAATTACAGAGAACAAGCGACATTAATTTGCGATTTTTGGCATGGATTTACTAAAAACGACACTAATTTGCGAATCGCGACATTTAATCTGCGAATGTACAACATACGACATGGGCAGTACTGGACTCGAACCAGTGACATCCTGCTTGTAAGGCAGGCGCTCTACCAACTGAGCTAACCGCCCGATAACATAATTAGGTTAACACAAAAATGATAATAACATATGCCCTCCGGTCAAATACATGATCGCATAACTTTGTGGAGCTTACCCGTCGTCACCGGTTTGACCCTAGCCTCGACACAGAGTGGCAATCTGGCCTTAATCGTTTCCGGAGGGTTCCTCTTTAG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCAACCCTCCCGCCTTGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.50,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 108314-109726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPD010000011.1 Microcoleus sp. FACHB-53 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 108314 37 100.0 33 ..................................... AGTACATTGATTCGCTTAATGGTATAAGCGTCT 108384 37 100.0 32 ..................................... ATAAGGCTCGGTTGTTGGGGTGTGGTCAACTT 108453 37 100.0 36 ..................................... AAGGCGCTGACGAATGACCCACTCCCAGCGCCACGA 108526 37 100.0 35 ..................................... AACGCGATCGCGTTGACGTAACTCGAAACGCAAGA 108598 37 100.0 34 ..................................... AACAAGTGGGCCGTTTACCACGTCATCAATCCGT 108669 37 100.0 35 ..................................... GCTTTTAGAAGCCCCTCCCAGCAACGATTCTACAA 108741 37 100.0 33 ..................................... TTAACTCTGTTAGACTTTAAACGAAACTAATAG 108811 37 100.0 35 ..................................... CAGAGAAAGGAGGGCTGTCACGACCGATGATCGAT 108883 37 100.0 39 ..................................... GAAAATTAGCAGGTAATGTAAAAATAGAGAGGCTTGCAG 108959 37 100.0 34 ..................................... TAGTATATATTTCAGACTGGCAGTTACATTATCT 109030 37 100.0 38 ..................................... GAGTAATCCTATCAGATCGCTGTCATTGGCTAACCCAG 109105 37 100.0 35 ..................................... AGCTCTGAACGATTGGGTTGATTTTGCTTTTGAGC 109177 37 100.0 38 ..................................... TAATCAGTTGATTGTGTTGGGGGTATAAAGCCTCAGTT 109252 37 100.0 35 ..................................... TTTTGCGTAGCAGCTTAATGCAGCGGTTGGGCGGG 109324 37 100.0 41 ..................................... ATTGACTTCCCGGCAGGGGATGAACCCCAAACTGTTCTCAG 109402 37 100.0 33 ..................................... TTGATCTGACTACCCTGCCTGGGTAGTGAGTTT 109472 37 100.0 34 ..................................... CAGACTCGATCGGATTATTTCAATGCTCACGTTA 109543 37 100.0 35 ..................................... CAGGACAACAGCCGCGCTAAATTAATAGCAGTTCA 109615 37 100.0 38 ..................................... TTCTGGGTTGTCCATGTCGAGCAAGTCGATTGCCTGTG 109690 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 20 37 100.0 35 GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC # Left flank : ATTCCGGAAGATAAGCGCCGGACTAAAATTCATAGTATTCTCAAGTCCTACGGGCAATGGATGCAGTACAGTGTGTTTGAGTGCAGTTTGACAGATACTCAGTATGCTAAGTTGCGATCGCGTTTGCGTAAGGTGATTAAGCCTGACCAAGATAGTATCCGTTTTTATTTCCTTTGCCAGTGTTGTCAGGGAAAGGTGGAACGGATCGGGGGTGAGCAATTGCGGGATGATACGATTTTCTTTGCCTAAATCCGACAACCTATAGGTGTTGAGATAGGAGGGGGATTTTTTGGGGCTGTATTCCTGACGATACAAGGGTTTGCAGCCTTTTCCCTTTTTAGGAGGTTGTCGGATTTCTTGAAAAGCTTGTTATATAATGGTTTTATCTATTTTTGTTTTGGGGGACTTGTTTCGCCCTAAGACTGAAATGGTATACTCAGGAGACCTTGTCGGATTTGAACCTTGAAAACTAAATACAGTATGGTTCCTGGATGCCTGCG # Right flank : CAAGTGGCAGCACTGGATAGAAAAAACTCTTTGCGCCACAAATTCATGGCTATGGGTAGAAGAAAGACTCTTAGCTACATAGATAGCCTGTAAAAGTCGATAACTCTACACTGACCTATGACAACCCCACAATCCCCCAATACCAGACCCACCGACTTAGAAACACCTGGAGATGTTGATACCCCAGATAAGCAGGTTGCAGCCTCAACCAACGCTGATGTTTTGAGAGAACAGGCGATATCCGATTCCCAAGCCAGAGAAGATTTGCAATCCAAGCAAGATACACAAGCGGATAGGCAAGTTGCGGAAGGCGAAGATACTTCCTCTGATATCAAAGCGGGCGCTGCAATACAGATTCCTGGTGAGCTTTAAGATACCCCAGCTTGGAAGGTTACTTTTTTAGGACTTACGCAAATTTATCTTTGAACCACCATCTGTAGGAAAAATCAAAGCCTCTCTCAGCCAAAAAAAATTATCCGCTTCCCTCTCCTTTAAGGAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTCCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 3 163614-165328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPD010000011.1 Microcoleus sp. FACHB-53 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 163614 37 100.0 34 ..................................... CTGTGTTTGCTGGTCCGGGAACCACAACCCTTGT 163685 37 100.0 34 ..................................... CTACATCGAGGTTAGTGAAGCCCAGGTGAGGGAA 163756 37 100.0 32 ..................................... AATAGCGAAAAGCTCTCTAGCGAGGTCGTCAG 163825 37 100.0 34 ..................................... ACGCCCACGGCGACCAAGGTCAGCCCGAACAATT 163896 37 100.0 37 ..................................... TCAGTGGGGCGTTCCCGTTTGAGCGTCTCAGCAATGC 163970 37 100.0 37 ..................................... ATACTGCCAGCGGCGACTAAGTCGGCGTAACGCTTAG 164044 37 100.0 44 ..................................... AAAATCATTGAATCCCAACAAACCCACAAAGTCATTTGGGTTGA 164125 37 100.0 33 ..................................... AGGGGCTGGGGAGCCGTCCCAATTCCGTGCATC 164195 37 100.0 35 ..................................... TTGGCGTCTGAAACCAAAATGCAGTTAGCCTTGTA 164267 37 100.0 37 ..................................... AGATCCGTACCCTTCCATACTTAGAAAATTCAGCCGC 164341 37 100.0 36 ..................................... CCCGGACAAGTAAACGTCAGTACTTCATCCAGTGGG 164414 37 100.0 38 ..................................... CTCACATTTCCTCGTGGGCTGACAAATTCTGTAGGCAC 164489 37 100.0 35 ..................................... CCGTTGACGGAGACACTGCCCACTCTCAAGGCAGC 164561 37 100.0 33 ..................................... CAGGAATGCTGTCCACCTGTTCCTTAGTAATCT 164631 37 100.0 41 ..................................... CCTCAATCCGGATTAATTCGGATTGGCAGAAAACGGGCAAG 164709 37 100.0 34 ..................................... CCGTGGTGTACCGACACAAGCTAAAAATCAATTT 164780 37 100.0 34 ..................................... ATATCGAATATCGGCCCATCCCTGATATTAGCCG 164851 37 100.0 39 ..................................... CGGTTGGAACAATGATTCTCTGACCAGCCCCACGTTTAG 164927 37 100.0 32 ..................................... GAACACATAAGCCGCAGCGCCGCAGTGTACCA 164996 37 100.0 34 ..................................... CCATATAAAACGAACGAGCTAATATCATCATCAA 165067 37 100.0 34 ..................................... AAAGACCAAGCTAGTATTTCCGGAATTATTGTTA 165138 37 100.0 42 ..................................... ATCGGATCGCCCCTCGCTAAAAGCGGCTACAACCCGCTCTAG 165217 37 97.3 38 ....................................T TCCAACTCGTGTTGTCGCCCATACTTTGGCAAAAGAAA 165292 36 89.2 0 ...T.....C....-...T.................. | T [165299] ========== ====== ====== ====== ===================================== ============================================ ================== 24 37 99.4 36 GTTGAAATCGACTTAAATCCCTATCAGGGATTGAAAC # Left flank : GATTCGGCGAATGTGTTTCACAACTGTTCCACCCGTTTTGCCGATGGTTTCCGCTATGGCTTTGGTGCAGAAGTGGGAATTAGTACCCAAAAGATGCCGCCGCGTGGGCCGGTGGGGTTAGAAGGGTTGATTACTTATAAGTATAAGGTGACAGGGAATGGTCATATTGTCGCACCTTACGCGGGTAAGGATGCTAAGCCGTTCACTCATCGGGATTTTTAGGTTTTTGGGTGGGGTGGAGGCTGTTTTGGTGACAACCAGTAGGTGTTTTTTTGAGGGAGTCAAAAATTGGGGCTGTATCCCTTATCCCACGGGGGTTTTAAGCTTTTTTCTGAAAAATGGGGTTGTCGGAAGTCTTGAAAGCTTTACGGAAATTGAGTTTTAGGCGTTTTTCTGTTAGCGGTTATTTTTTTATCGATGGCTGTAATGGTATATTGAGGTCAGGTTGTCAGAATCTGCACCTTGAAAACTAAATACAGTATGGGGTCTAGGCACCAGCG # Right flank : CATTTTAAACTGACAAGATTTTGCATTAATTGTAACAACCGCCAGTGGTTAAAACCACTGTCTCATAGCTAAAGTCGTCTAAAGACGACTGGATGAGCATTTTAGTCCACTTAAGTGGACTTGAGCTATGAGCCGTGAACTTAAGTTCACGGCGGACTGTCGGGTTTAGAGAGAAGAGAATGAAGCAAGATCGTAACTTACTCATTTAGCAAAAAATATCAGCCCTAAATTATCTCAGGCCCAGAAGATTGGCGTTCATGTTGTAGAAACGTTTGAAAAATGATAAGCTATGTTAGCTTAATTAGCTGTAAGTTGTCGTTTAATGGACTGTATTCAATTAACTGGAATTCGTTGCTACGGGTACACCGGCTACTTAGCAGAGGAGCAAGTACTCGGACAATGGTTTGAGCTTGACCTAACCTTGTGGATAGATTTAGCACCCGCTGGAGAGAGTGACGACATTACCGAGACGCTGGACTATCGCCATGCGATCGAGAAAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCGACTTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 74509-74179 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPD010000028.1 Microcoleus sp. FACHB-53 contig28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 74508 37 100.0 39 ..................................... GCTGTCCTCAATGTCGAGCGAATAAGTGCACCAATCTGG 74432 37 100.0 37 ..................................... TGGCGTGTATGGGCCACGAGAGTTTTTAGTTCAAGAA 74358 37 100.0 35 ..................................... CATTCCAACTGGTTGACTCCAACACGAGCTTTATT 74286 37 100.0 34 ..................................... GGACATTGCGCTATTTGGACAGCATTCCCCTCGC 74215 37 94.6 0 ........G...........................A | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 98.9 36 GTTTCAACAACCATCCCAGCTAGGGGTGGGTTGAAAG # Left flank : CAACGAGTATGCCTTCATTTGTGCCTGATGGAAAATATGCTATCAACCTCCCAAAGTGTACCTCACTAGCTCAGGAAAGGCTATAGCGCCGCAGGTCATGTTCTTTGAACCGCTGAACTGCGAACAGTATGGGTTAGTTTAACTGTTGGAAGACAGTTGTGCTTTCTGACCCTGGTAGCTGTCCAACCTGATGCTGCTGTCCCTTGTGGGCAGGAATAAGGTGCGCTCCCAGCAATAGGCACGTAGACATACTACAGTGATGGCTACCCAATCACCTCCGAGCAAGGAGGAATCCACTCTCATTCTTTTTTCTGACGGCTGAAAGCGGGGGCAAAAACCCCAGGGAGCCGTCAGAAGTTCAAAACCCTTGTCTAGTATTTGTTTAAGGAATTTCGGCAGTTAGCAATTTTCTCTTTTTTCAGGAGATTGAGCAGGAATTTTCGGGAGCCGTCAAAAAGGCTTCCCAAAGGGGAGTATAGATAAGGGTCTAGGTGGGAAGA # Right flank : TGCTACGCTTCTTACGTCTTAATGGATAAACGTAGTTTTCCTATTATTTAAGATTAATGGTGGATTGAAAGGAGCAGAGGACTGAAAATTGATGAGTAGACGATCGATGACAATAATTTGTCACTATTATTTACCTATATAATAATTCGTCACAGCGACACATAATTCGTCTTAACGACACTAATTTGTCACCGATGACATCAATCTGTCACCAACGACAATTAATTAGTCACTGTACAATTTTGAATGCCAGGACGGAGATTTGAACTCCGGACACGAGGATTTTCAGTCCTCTGCTCTACCAACTGAGCTATCCCGGCTTGTTATTTTCGGCGCTTAACTAAAGTAGCAAATTTAACAAGTCTTGGCAACAGTTTTATTCCGGATTAAATCTTAAGGAATGTTAAGGATTATTCTTCATTATGTCTGAATACCTGTTCATACGTTAGATTAATATCAGAATGCATAAGGAAACCATCATGACCACCGTAACTTCCATG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCATCCCAGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 4967-2483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPD010000040.1 Microcoleus sp. FACHB-53 contig40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 4966 36 100.0 39 .................................... CATTTAACGTAACCCGGTTAAGGTCTGTTATAGCCACAA 4891 36 100.0 39 .................................... ATCTCCTGCAAAAATGAGATGAAGACCACTCATTCCGCG 4816 36 100.0 40 .................................... AAGCTTTGTAACAAACATGAAAAACTCCAAAAATGTGAAA 4740 36 100.0 39 .................................... TTATCTAATTCACGATTCTCTCTATCCCAAGCAGTTTGT 4665 36 100.0 35 .................................... TTCATCAGCATCTAAAGTAGCTGGTATGTTATCAA 4594 36 100.0 36 .................................... CTTGACCTTTTCTGAGCGACATTGATCCACAATGAG 4522 36 100.0 41 .................................... GCTATTGCCGATCCATATTTTGTGGTTAACAGGGTAATAAA 4445 36 100.0 35 .................................... ACTTGATTGCATGTTTATAGATGCCGAAGAAGCTA 4374 36 100.0 40 .................................... TCGAAAGGTTCGAGACAAAACCGTCGGCAGTACTCCCTGA 4298 36 100.0 35 .................................... ACAACAATGAAGGTACATCTAAGATTGTATTATTA 4227 36 100.0 35 .................................... TCTGAACATCAAAGTTTTTACCTAGTTCACTTTTA 4156 36 97.2 38 A................................... GAAGGAATCAGTTTGGAGTAACCATCCCCAAATGGAGA 4082 36 100.0 36 .................................... GAGATATTCGGTTTTGTCGAAGATACCGCAGACATT 4010 36 100.0 40 .................................... TTTCATTCGCCAGCTCATTAAGTCAGCACTAGCATTTTGT 3934 36 100.0 38 .................................... TTCTGTAGCAACTAGTTGTAGATTATGTTTTTTACAGA 3860 36 100.0 37 .................................... TTAATTACAATGGTGTATTAACTTCTTTCTCTTCTAC 3787 36 97.2 36 ...............A.................... CCATCTCTTTTTTACCTCATCTAAAGTCATCCCAGA 3715 36 100.0 35 .................................... ACTATTCCTAGAGCAGCAAGCTTGGCCTTTGTAGA 3644 36 100.0 35 .................................... TCAAAATCGTTATCTAGGTTTCTGTCTAAATAAGT 3573 36 100.0 40 .................................... CATCTTGGTTCCAATAACACCATTGTAAAAACTCTTCAAA 3497 36 100.0 41 .................................... GCGCTGGATGTCAGCCTGGTGCTCGATGTCAGCGTGATTGG 3420 36 100.0 39 .................................... TCGTTATCTGTAGTAGCTAGTATCCTTTCTGCCTCTTTA 3345 36 100.0 37 .................................... CCAACAAACTATTGTTTTATCGTAAAACTCATAAGAA 3272 36 100.0 36 .................................... ACAAAACACCTTTCACTCCCGCCGACCGCAGACAGA 3200 36 100.0 37 .................................... TGCTCCTTAAGTACTTGCTTAGCTAATCTTTGTTCAA 3127 36 100.0 35 .................................... TTGAAGCTAATCCTGCATTGAGTTTCATTTTTGGA 3056 36 100.0 38 .................................... AAGGCTAGGACAGCCTTACACTCAGGTTCATAAGTCCT 2982 36 100.0 41 .................................... AGGAATATCTCTTGATGATTGACCGTTTTTTTTAAAATTGA 2905 36 100.0 38 .................................... CTCTATGTAGACCCCCTTATATGAGTAGCCCTATATAG 2831 36 100.0 38 .................................... TACTCAAGTAGTCAAATTTCAAACCGTATGAATTTTCA 2757 36 100.0 49 .................................... AGTCCAAGTACAGATATTACTTTGGCACGAGGTGCACCACCAGCCTGTA 2672 36 100.0 43 .................................... AAAACTTAGAAATAAAGACAACTCTTAAATGACCTTGTAGATG 2593 36 100.0 39 .................................... CTTTTCAGGAAGATATTAAAATAACAGATCTAAAAGAAC 2518 36 83.3 0 T.T.............A...TC.T............ | ========== ====== ====== ====== ==================================== ================================================= ================== 34 36 99.3 38 GTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : TGCCAGTGATGGCTGCTACTGATGTTGTTTTATGTGGTTGCCTATGATATCCCGGATGATAAGCGGCGCAAAAAGGTGTCTGACTTATTAGAAGGGTATGGCAAGCGAGTTCAGTATTCGGTGTTTGAGTGTATGCTGACTCAGGCTAAATATGATGAATTGTGCTCTCGGCTGAAGAAGCAGGTGAAAGTCAAAGAAGACAGTGTACGCTTTTATCCCTTGTCGCGGCATACGTTAGGACAGGTGGAGACTTGGGGAGTGGGGCCAGATATGACACAAGCGCCTGGGAGCGTGGTTATCTGATGAATGTATCATGAGGTAGCCGACGCAATAGCAAAAGGGCTGAAAGGCTGATTAGAGCGTTGGGAGTGTCGGTCGCCTGTCCTGCATGGGTTTCAGCGATTTTAGCAGGGACTTTTGCCAGTGTTGTCAGGGAAAAATTGGTGAGCGTCGGAAACGGCTTCTGGACACTAGGCGGGGCGAAGGTTTTAAATAGAGGG # Right flank : CATGTAGAACACGGTCAAATTCTTATGGCTTTTAGCCCAGTGCAAGCAACCCCGATTCCTTTAGATATTCAGTACGAAGCAGATGGAGACGATCTGGGGTGGGGTGGGATTATTAACATGAATATCCCTGTAAACGACGCTACACAGCCTTTTGCAGGCCGTCCTTTGTTCGTCACCATCATTGTTGATGGCAATGCGGCTGACTCGGTGATGTCATCGCCAGTGTTTCAAAAAGCTATCACCTCCGAAATCATAAATTCTTGTGGCTCTCTCTGAGCCGTCAGGTTTGGCAGGCAGAGAACTGACTGGTCTATTACATTTGGAATAATGTTGGACGGCACAATCAAAAGTTTTGAATGCATAGACCCCGAAAAAGAAGCGGACAAGCCCCTTTGGGGACAGCAAATATGTGTATAAGACTACGGTATACCTCGACATGGCTTGCTGCCGTCACTCCCCTAGCGCATCCTCAAGTAAGTCCGTAATCTGCTCTTGCAAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 28443-29724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPD010000040.1 Microcoleus sp. FACHB-53 contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 28443 37 100.0 38 ..................................... GACTTGTAGCTTCGCTTGTCTAACGCACTGATTGGGGC 28518 37 100.0 39 ..................................... GAAGTAGGTCACGGGCATCGCTGGGTTGATTGTCCGTTG 28594 37 100.0 34 ..................................... TATAGATGTTTGTTCGGTATAGCCAAACCTTTGG 28665 37 100.0 36 ..................................... TATTCATAAGCGGCGGGACATTCCCTTTACCTATTT 28738 37 100.0 38 ..................................... CAGCCCTTCAGTATTTGTTTGGGATATTATTTTCTCGA 28813 37 100.0 37 ..................................... TCAAACTAATCATGCCAAGAGGTTTCCATTGTATGAG 28887 37 100.0 36 ..................................... AAAACATCCCAATGCCGATCCAGGTATTTTTCAGCA 28960 37 100.0 38 ..................................... GCTTGGTGTTCTTGGGGCGGAGCAAAGTTTTGGGCGTA 29035 37 100.0 33 ..................................... AGATAGGGAAAGTCTTCGAGAATTTCGTCTTGG 29105 37 100.0 37 ..................................... ATGAGTACGATACGTTAATTACTGGCCCCAGCGTTAG 29179 37 100.0 36 ..................................... TCTTGAGCTGCCTGTCTGTCAGCGTTACTGGAGGTT 29252 37 100.0 34 ..................................... AGAGTAGCGCGAGCCTGATCGCTGAGTCCCTCGA 29323 37 100.0 37 ..................................... CATGAAGTCCCGCACATCAATATTTGCCTGTTGGAGA 29397 37 100.0 34 ..................................... CTGACTCTAAGTTCAACGGCAGCCGGAGCAAAAT 29468 37 100.0 35 ..................................... CCTGCCGAAGACGGTCAGGCATGTCCGAATGCAAG 29540 37 100.0 35 ..................................... ACTTCTGGCTTAACCCCAGTCTCTACAGTTGCCAC 29612 37 100.0 41 ..................................... ACGCCGTCGTAAGCGGCAAAGCAGTTTACCCGACGTTTAGA 29690 35 91.9 0 .................A.............--.... | ========== ====== ====== ====== ===================================== ========================================= ================== 18 37 99.6 36 CTTTCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : TGGCTCTATGCAAAATTTGGAACAAACAACGTCTCCGCCTGGTGCCGGAAACTGTGATTGAAGAATTTTTCCAAGCACTGCAAGAGTTTCCTCCAGCCCTGAATGAGGGGTTTGCGATCATCAATTCGGTGGATGTTACCGAAGGGGGATTTGATATGGCGCAAGTTGAACGCCTGCTTGAAAGGTTGTTGGTCAATGATTATGAAGCCGTCGAGTGAAACCAGATTCTAGGAATTAATTTGGCCTTTTCGTGTGTAGGTGCTATGGGATAATGAGATTATCGCTGGGCACAAAATAATTTTCGTGGGTCGAAGTGGGAGCGAAAAACCGGGGAGTCCCACGAAAAACGCTAGAACCTTGACAATTGAAGAGTTTGAACGTTGGCTCTCGGCTAGTAATTGCGAAGTCTTATCAATAACGGGGGCTCAAATGAGGTCAAAAAAGAGACCCACGAAAATCCTCTGTAGAATGAAGAGCTAGAGGGCTTTTCAGACCCCGAA # Right flank : CCAAATGCATCCCCCGGCACTATCGGGGGATAATTATTATTGACAGGACTTAGGCATTTGCCCCTTAATCACCTGGGTAAGAGGGAGGAAAGGAGGCGATCGCACCGGACAATGCCCCCTAACCTGTTAACAGATTGGGGGGCGGCACGATTTTGATAGTGTTAAGTGAGAAGCACCTCATCCAAACGGCTGTTCCCACCACTTCCAAGACTCCTTATTAAATGGCGATCGCGTTTGCAGCTCACATAGGCATAATTCTGTGCCCATCCCCTAAAAGACTGCTATTTGGAGTCTAAACGTGTCTCGTACTGCATCAGTTATTGGGGGGTGAGCGAAAAAAAGCGTGGGGTGGGGGGGAGTTAGTTAGCGTGTATGAGCCGCTAACTATGCCGCCAAACGATTAATGCTTTCTGCTGCTGTTACTTGCCCTGCTTTTGGTTTTTCTCTTGAAATCTGGTGGCTTCTTCGACTAAATCCTCTAAACCTAGTTCCAAGGTATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 36611-36855 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPD010000040.1 Microcoleus sp. FACHB-53 contig40, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================== ================== 36611 27 100.0 46 ........................... TAAGAACACTCGAGCAGTTGCTAGCACAAATGGGAGAGCGCAGGTG 36684 27 100.0 46 ........................... AGGAACACTTGCTAATAACCGATTTTGCTGCTTGAGTTCAGGCAAG 36757 27 100.0 45 ........................... AGGAACAACTTCCCGCAGTGCAGCCGGATAGGTGCGCCAGTTGCC 36829 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ============================================== ================== 4 27 100.0 46 TGACCAACGCCAGAAGGCATCAAAGGT # Left flank : TATTTGCGTCGCTTTGCTGTTGACCACTGGTATCGTTTTCTCAAGCAACGCTTACATTGGACAGTTCCTCAACTGAGTACTCCTTTTCAATGTGAAAGGTGGAGTGATTTAATGCCTATCTTGACTTGGGAATTATGGTTAGCTAGAGATTTGGTGGCGCAGCACCATCTTCCTTGGCAAAAACCCCTCTCAAATTTAACTCCTGGACGCGTGGCTCAGTCAATAGCATTACTTTTACCGGAGATTGGCACACCAGCTACCTCTCCCAAACCCCGTGGAAAGTCTCCGGGTTGGAAATCAGGAAACAAACGTACTAGTAAACCTCGTTATCCAGTGGTTAAGAAAGGCAAAATAAAACACAAAAAACCCTGTAAACAAGCCGTTTAAATTTCGAGTTTTAGATGACTTTTTCCTTTCTCAGCTTTTGGGTTTTGGCTGAGCTAATTTGTCATAGTCTAAACTCCAGTAATAACCGATTTTGCTGCTTGAGTTCAGGCAAG # Right flank : TAGGAACAAGCCGATGGCTGGAAGGCTTGGTGTGAAAGTGTGTCTAACAGCTTAACACAAAAATAGAGTTGGACACCAATTTCCTCCACAAAACTTGTTTTTATCTGATTCGCCGATGTCCAAAAACCTTACAGAGAATAGAGTTCAGCAAACGGCAAGCATCTCAAATGCTTCCCAAAACGCTCTAACCCGCTCCCAACTAGGTTTTCAGCTTTAGTTTGTACTTAGGCGGCTTCGCACTCAGAGATCCTTGCATCAGACAATCCGGTATCCTGCCTCCTCAACAGGCCAAGCCTCTGGACGGTTGGATGCGATCGCAAGGGCGCTGCGGCTTCTCCAACTGAGTACGCTCTTCTCGCAACGCGATCGCCTTTGACCAAAAAATGAGAGAGAGAGGGCTAGAACCATTGTCCCTCCTCGCTTCTATCAACCTGTTAACATCACACATATAGTGTTAACAGAATTGGAGATGAGGGCGCTCGAGGGACACACCCCTGTCG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGACCAACGCCAGAAGGCATCAAAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 94501-94682 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPD010000044.1 Microcoleus sp. FACHB-53 contig44, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 94501 37 97.3 36 ..A.................................. ATGAGTGTGTTTTTGTCAGCGGCTATCACACGATCG 94574 37 100.0 35 ..................................... CTTTCTCCTTCTCTAACTCTCACAATTCCCTCGAA 94646 37 97.3 0 .................T................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 98.2 36 CTTTCAACCCACCCTATGACGGGAGGGTTGATGAAAC # Left flank : TACCGACTCGTTCCCATTGAGGCGCTTTGACACGCAACCATTCTGGTTTAACGACCACTCCCAGCCCAGCTCCCACTGAAGTTACAGTGATTATCCTAGCAAGCTGAAGGCTGATTGCCGATACAATGTGATACCATAGGTGAGTTACGGCTATAACTTATCGGGATGTAGCGCAGCTTGGTAGCGCACTTCGTTCGGGACGAAGGGGTCGCAGGTTCAAATCCTGTCATCCCGATTATAACAGTGATGTAAATTCACAAATTAAACGTCGCTGTTAACAAATTGATGTCGTTTTTAACAAATTGACGTCGCTGTTAACGGCGACTCTTCATCTAGGCAACTGTTAACAAATTGTTGTCGCTAGACTTCTGAACGTGGAATATTAACTAAGAAAGTTACCATCTCATCCTGTTGAGAAGGTTTACCTCTATCAGAATAATCCCGAACGAAGTGCGCCTTTCAACCCTCCCTAAAAATCTCTGAAAATAACGTAAGGCAGA # Right flank : CCGCGCCCGCTGAAACCCTTGTCTACACAAGCTGACAAATACATTTTTGTCGGCTGATTTTAAAATCCTCATTTCAGCTCTTTCTCCCAAGAGAATACTGATGAAAGTAAAAGTCTTAAACCAAGACTAGGCAAGAGTTCTGAACAATTGACGGCTCCTCCGGGATTTTGCCCCCGCTTTGATCCGTCAGAAAAATAAAAAATAAATAGGGAGGGTTCCCCCGACGAAGGGGGTGATTCAGTAGCCACCACAGCGTCCGCCCCCTTGTTGCCAAGGAAACGCCCGCACCCCTGTTGCCAAGGGCTGGTGCAAGTCATGCATTACTCCTTATTGCTGGGAGCGCACCTCTGTTACGCTGTATCATTCAGAGATAAGATTATCTGACTTAGATAACACAGGTAAGATTCCCGTCTGGACAAAGGACTCAATAGACGGCAGCATCAGGAGTGGGCAGCTACCAGGGTCAGAAAGCAAAACGGTTTTCCAACCGTCAAACTAAC # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCACCCTATGACGGGAGGGTTGATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.70,-13.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //